FFCP PHASE1:Hg19::chrX:46940233..46940248,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:46940233..46940248,+
|short_description=p3@RGN
|description=CAGE_peak_3_at_RGN_5end
|association_with_transcript=-9bp_to_ENST00000336169_5end
|EntrezGene=...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9104 | |EntrezGene=9104 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9989 | |HGNC=9989 | ||
|TSSclassifier=strong | |||
|UniProt=Q15493 | |UniProt=Q15493 | ||
|association_with_transcript=-9bp_to_ENST00000336169_5end | |||
|cluster_id=chrX:46940233..46940248,+ | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_3_at_RGN_5end | |||
|id=chrX:46940233..46940248,+ | |||
|ontology_enrichment_celltype=CL:0000181!5.61e-23!12;CL:0000417!5.61e-23!12;CL:0000668!5.61e-23!12;CL:0000414!5.61e-23!12;CL:0000412!5.61e-23!12;CL:0000182!5.61e-23!12;CL:0000223!4.71e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000182;6.18e-38;12!CL:0002563;2.00e-10;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,6.18e-38,12;CL:0000223,6.95e-15,58;CL:0002563,1.95e-10,4 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.90e-30;11!UBERON:0009497;1.01e-25;13!UBERON:0003104;2.48e-14;31!UBERON:0001041;6.16e-11;30!UBERON:0000358;1.46e-10;1!CL:0000223;8.27e-10;58 | |||
|ontology_enrichment_disease=DOID:114!2.60e-09!2 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!4.17e-22!19;UBERON:0006925!4.17e-22!19;UBERON:0008836!4.17e-22!19;UBERON:0008835!8.17e-19!22;UBERON:0003894!8.17e-19!22;UBERON:0005057!9.95e-19!26;UBERON:0009854!6.59e-18!23;UBERON:0007499!2.59e-16!25;UBERON:0009497!2.59e-16!25;UBERON:0000015!2.59e-16!25;UBERON:0002423!2.59e-16!25;UBERON:0006235!2.59e-16!25;UBERON:0004161!2.59e-16!25;UBERON:0009856!1.32e-15!26;UBERON:0002365!9.15e-13!31;UBERON:0002330!9.15e-13!31;UBERON:0005172!1.30e-12!55;UBERON:0005173!1.30e-12!55;UBERON:0004921!1.64e-12!129;UBERON:0004185!1.64e-12!129;UBERON:0003929!2.31e-11!54;UBERON:0000160!3.83e-11!27;UBERON:0002368!4.44e-11!35;UBERON:0002417!4.56e-11!61;UBERON:0000916!4.56e-11!61;UBERON:0005409!3.39e-10!35;UBERON:0000949!5.81e-10!45;UBERON:0001007!1.53e-09!155;UBERON:0001555!1.53e-09!155;UBERON:0007026!1.53e-09!155;UBERON:0004119!2.82e-09!169;UBERON:0000925!2.82e-09!169;UBERON:0006595!2.82e-09!169;UBERON:0005911!6.36e-09!82;UBERON:0005177!6.03e-08!107;UBERON:0002530!4.25e-07!59;UBERON:0000077!7.17e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.39e-39;19!UBERON:0006925;2.39e-39;19!UBERON:0002423;1.21e-29;25!UBERON:0002365;5.48e-23;31!UBERON:0002330;5.48e-23;31!UBERON:0002368;3.81e-20;33!UBERON:0000949;6.51e-17;43!UBERON:0000160;4.26e-13;17!UBERON:0001242;2.00e-10;4!UBERON:0001262;2.00e-10;4!UBERON:0004786;2.00e-10;4!UBERON:0004808;2.00e-10;4!UBERON:0001277;2.00e-10;4!UBERON:0001007;2.36e-10;81!UBERON:0005409;3.17e-10;22!UBERON:0002530;3.35e-09;57!UBERON:0005172;6.87e-09;52!UBERON:0005173;6.87e-09;52!UBERON:0002108;1.40e-08;4!UBERON:0002417;2.96e-08;58!UBERON:0000916;2.96e-08;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.39e-39,19;UBERON:0006925,2.39e-39,19;UBERON:0008836,2.39e-39,19;UBERON:0008835,7.79e-34,22;UBERON:0003894,7.79e-34,22;UBERON:0009854,2.57e-32,23;UBERON:0007499,1.21e-29,25;UBERON:0009497,1.21e-29,25;UBERON:0000015,1.21e-29,25;UBERON:0002423,1.21e-29,25;UBERON:0006235,1.21e-29,25;UBERON:0004161,1.21e-29,25;UBERON:0009856,1.85e-28,26;UBERON:0002365,1.10e-23,31;UBERON:0002330,1.10e-23,31;UBERON:0003929,1.73e-23,54;UBERON:0002368,7.58e-21,35;UBERON:0000949,1.14e-19,45;UBERON:0004921,1.33e-15,118;UBERON:0005911,7.78e-15,82;UBERON:0002530,1.04e-14,59;UBERON:0000160,4.26e-13,17;UBERON:0005172,4.32e-13,54;UBERON:0005173,4.32e-13,54;UBERON:0001007,2.87e-12,145;UBERON:0001555,2.87e-12,145;UBERON:0007026,2.87e-12,145;UBERON:0002417,1.17e-11,60;UBERON:0000916,1.17e-11,60;UBERON:0004119,6.76e-11,160;UBERON:0000925,6.76e-11,160;UBERON:0006595,6.76e-11,160;UBERON:0001242,1.95e-10,4;UBERON:0001262,1.95e-10,4;UBERON:0004786,1.95e-10,4;UBERON:0004808,1.95e-10,4;UBERON:0001277,1.95e-10,4;UBERON:0005409,4.98e-09,25;UBERON:0002108,1.43e-08,4;UBERON:0011216,3.56e-08,223;UBERON:0005177,5.91e-08,101;UBERON:0001041,1.18e-07,87;UBERON:0000490,2.28e-07,148 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785874452986276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348581828608555,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,50.7020139287323,52.0898424839142,34.8566044942028,0,9.9620635219922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.7896154169214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,82.9480143764164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,87.9303099255117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.755798243562828,0,0.123084805461069,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221158519862449,0,0,0,0,0,0,0,0.179515288819544,0.217294743844016,0,0,0,0,0,0,0,0,0,0,0,0,0,4.24059214301822,0,0,0.0884575645033392,6.11030144933625,0,0,0,0.269604531922708,0,0,0,0,0,0,9.67925728389311,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0.0730893170861856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0.429226048136571,0,0,0,1.16495949527454,5.43603957919843,3.79112948553366,4.78565161364713,0.590564889088493,0,0,0,0,0,0,0,0,0,0,0.86686278029118,0.262272940674991,0,0,0,0,0,0,0,0,0,0,0,0,0,68.1467886603083,25.1763088933221,0,0,0,0,0.427149650270779,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.90757005616546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354809480650555,0,0,0,0,0,0,0,0,0.560544326627578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,12.8950140697335,1.41095188908457,0,0,0,0,0,0,0,0.128915775947154,0,0,0,0,0,0,0,0,0,0,5.290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34640942403454,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785874452986276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348581828608555,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,50.7020139287323,52.0898424839142,34.8566044942028,0,9.9620635219922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.7896154169214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,82.9480143764164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,87.9303099255117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.755798243562828,0,0.123084805461069,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221158519862449,0,0,0,0,0,0,0,0.179515288819544,0.217294743844016,0,0,0,0,0,0,0,0,0,0,0,0,0,4.24059214301822,0,0,0.0884575645033392,6.11030144933625,0,0,0,0.269604531922708,0,0,0,0,0,0,9.67925728389311,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0.0730893170861856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0.429226048136571,0,0,0,1.16495949527454,5.43603957919843,3.79112948553366,4.78565161364713,0.590564889088493,0,0,0,0,0,0,0,0,0,0,0.86686278029118,0.262272940674991,0,0,0,0,0,0,0,0,0,0,0,0,0,68.1467886603083,25.1763088933221,0,0,0,0,0.427149650270779,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.90757005616546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354809480650555,0,0,0,0,0,0,0,0,0.560544326627578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,12.8950140697335,1.41095188908457,0,0,0,0,0,0,0,0.128915775947154,0,0,0,0,0,0,0,0,0,0,5.290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34640942403454,0,0,0,0,0 | ||
|short_description=p3@RGN | |||
}} | }} |
Latest revision as of 05:20, 25 September 2015
Short description: | p3@RGN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RGN_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -9bp_to_ENST00000336169_5end |
EntrezGene: | RGN |
HGNC: | 9989 |
UniProt: | Q15493 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 6.18e-38 | 12 |
endodermal cell | 6.95e-15 | 58 |
intestinal epithelial cell | 1.95e-10 | 4 |