FFCP PHASE1:Mm9::chr3:88991896..88991919,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=68521|HGNC=|MCL_coexpression_id=40|UniProt=|association_with_transcript=0bp_to_ENSMUST00000155033_5end|description=CAGE_peak_7_at_Fam189b_5end|id=chr3:88991896..88991919,+|ontology_enrichment_celltype=CL:0000838!8.04e-14!12;CL:0000084!4.92e-13!11;CL:0000827!4.92e-13!11;CL:0000542!1.60e-12!13;CL:0000051!1.60e-12!13;CL:0002031!1.44e-10!25;CL:0000791!1.66e-10!9;CL:0000789!1.66e-10!9;CL:0002420!1.66e-10!9;CL:0002419!1.66e-10!9;CL:0000790!1.66e-10!9;CL:0000624!4.91e-09!8;CL:0000738!6.99e-09!17;CL:0002087!6.99e-09!17;CL:0000988!2.36e-07!32;CL:0002032!2.36e-07!32;CL:0000037!2.36e-07!32;CL:0000566!2.36e-07!32;CL:0000837!2.36e-07!32|ontology_enrichment_celltype_v019_2=CL:0000791,1.20e-19,9;CL:0000789,1.20e-19,9;CL:0002420,1.20e-19,9;CL:0002419,1.20e-19,9;CL:0000790,1.20e-19,9;CL:0000084,4.41e-16,11;CL:0000827,4.41e-16,11;CL:0000838,9.62e-15,12;CL:0000624,1.92e-14,8;CL:0000542,1.31e-13,13;CL:0000051,1.31e-13,13;CL:0002031,3.10e-13,25;CL:0000738,2.12e-10,17;CL:0002087,2.12e-10,17;CL:0000988,3.15e-10,32;CL:0002032,3.15e-10,32;CL:0000037,3.15e-10,32;CL:0000837,3.15e-10,32;CL:0000625,2.16e-08,1;CL:0000815,2.54e-08,1;CL:0000792,2.54e-08,1;CL:0002320,6.08e-07,46;CL:0000134,6.08e-07,46|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!2.55e-23!48;UBERON:0004177!5.75e-23!29;UBERON:0003408!2.56e-20!24;UBERON:0002390!3.84e-20!45;UBERON:0003061!3.84e-20!45;UBERON:0002370!4.42e-19!23;UBERON:0000974!4.42e-19!23;UBERON:0004807!4.42e-19!23;UBERON:0005058!4.42e-19!23;UBERON:0003351!4.42e-19!23;UBERON:0009113!4.42e-19!23;UBERON:0003295!4.42e-19!23;UBERON:0009722!4.42e-19!23;UBERON:0005562!4.42e-19!23;UBERON:0007690!4.42e-19!23;UBERON:0006562!4.82e-18!24;UBERON:0001557!4.82e-18!24;UBERON:0001042!4.82e-18!24;UBERON:0008814!4.82e-18!24;UBERON:0009145!4.82e-18!24;UBERON:0000072!2.12e-15!27;UBERON:0002405!4.15e-14!70;UBERON:0001004!1.20e-13!42;UBERON:0000065!1.10e-12!41;UBERON:0000063!5.11e-12!35;UBERON:0005057!4.16e-11!51;UBERON:0001007!1.02e-10!128;UBERON:0001555!1.02e-10!128;UBERON:0007026!1.02e-10!128;UBERON:0004119!2.25e-10!130;UBERON:0000925!2.25e-10!130;UBERON:0006595!2.25e-10!130;UBERON:0004921!1.37e-09!126;UBERON:0004185!1.37e-09!126;UBERON:0003081!1.96e-09!88;UBERON:0001041!3.50e-07!92|ontology_enrichment_uberon_v019_2=UBERON:0000331,1.26e-09,3;UBERON:0002116,1.26e-09,3;UBERON:0001204,1.26e-09,3;UBERON:0001168,1.26e-09,3;UBERON:0000029,4.10e-08,1;UBERON:0001097,4.10e-08,1;UBERON:0003968,4.10e-08,1;UBERON:0001467,4.10e-08,1;UBERON:0002108,1.94e-07,4;UBERON:0002384,6.08e-07,46|phase1_expression=0,0,0,0,0,0,0,6.97265946584512,0.281577444303333,0.234064526321993,0.34243593645101,0,9.24483941628511,9.79108507092771,0,0.404950534779652,0,1.41957974411207,1.64537320326887,0.42438965179803,0,0.695036658406197,0.783599367416806,0.159992422793407,0.45881856213434,0,0,0,1.14014051673824,1.00812051903972,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167782606057736,4.35217285206807,7.73015738027667,0,0,0,0,0,0,0,0,0,0,0.7104801149461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.34255163915718,1.55362730188303,0.148442139064825,0,0,0,0,0,0,0,0,0.884610551949874,0,0,0,0,0,0,0.510914110417183,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32167513193519,0,0,0,0.128867461322093,0,0.22237804384487,0,0,0,0,0.397912944082302,0.58489226135736,0,0.216138049874694,0.199141273254367,0,0,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0.184753190166605,0,0,0,0.234690248288502,0,0,0,0,0.221464689648775,0,0,0.172684981865896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0.340439605753788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512612642393558,0.206386867963223,0.185194527369712,0.188368457004691,0,0.228778173206523,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,0,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,0.948033361884535,1.01362607645082,0.718976700153791,0.389762468933385,0.179026695667481,0.993406773906324,0.961563596159751,1.03382669022204,0.504832249740738,0.15241361331,0.403304740547362,0.974578807397524,0.384847366561318,0.584384510907845,0,0,0,0,0,0,0,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188218760830661,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p7@Fam189b}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=68521 | |||
|HGNC= | |||
|MCL_coexpression_id=40 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000155033_5end | |||
|cluster_id=chr3:88991896..88991919,+ | |||
|description=CAGE_peak_7_at_Fam189b_5end | |||
|id=chr3:88991896..88991919,+ | |||
|ontology_enrichment_celltype=CL:0000838!8.04e-14!12;CL:0000084!4.92e-13!11;CL:0000827!4.92e-13!11;CL:0000542!1.60e-12!13;CL:0000051!1.60e-12!13;CL:0002031!1.44e-10!25;CL:0000791!1.66e-10!9;CL:0000789!1.66e-10!9;CL:0002420!1.66e-10!9;CL:0002419!1.66e-10!9;CL:0000790!1.66e-10!9;CL:0000624!4.91e-09!8;CL:0000738!6.99e-09!17;CL:0002087!6.99e-09!17;CL:0000988!2.36e-07!32;CL:0002032!2.36e-07!32;CL:0000037!2.36e-07!32;CL:0000566!2.36e-07!32;CL:0000837!2.36e-07!32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.20e-19,9;CL:0000789,1.20e-19,9;CL:0002420,1.20e-19,9;CL:0002419,1.20e-19,9;CL:0000790,1.20e-19,9;CL:0000084,4.41e-16,11;CL:0000827,4.41e-16,11;CL:0000838,9.62e-15,12;CL:0000624,1.92e-14,8;CL:0000542,1.31e-13,13;CL:0000051,1.31e-13,13;CL:0002031,3.10e-13,25;CL:0000738,2.12e-10,17;CL:0002087,2.12e-10,17;CL:0000988,3.15e-10,32;CL:0002032,3.15e-10,32;CL:0000037,3.15e-10,32;CL:0000837,3.15e-10,32;CL:0000625,2.16e-08,1;CL:0000815,2.54e-08,1;CL:0000792,2.54e-08,1;CL:0002320,6.08e-07,46;CL:0000134,6.08e-07,46 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.55e-23!48;UBERON:0004177!5.75e-23!29;UBERON:0003408!2.56e-20!24;UBERON:0002390!3.84e-20!45;UBERON:0003061!3.84e-20!45;UBERON:0002370!4.42e-19!23;UBERON:0000974!4.42e-19!23;UBERON:0004807!4.42e-19!23;UBERON:0005058!4.42e-19!23;UBERON:0003351!4.42e-19!23;UBERON:0009113!4.42e-19!23;UBERON:0003295!4.42e-19!23;UBERON:0009722!4.42e-19!23;UBERON:0005562!4.42e-19!23;UBERON:0007690!4.42e-19!23;UBERON:0006562!4.82e-18!24;UBERON:0001557!4.82e-18!24;UBERON:0001042!4.82e-18!24;UBERON:0008814!4.82e-18!24;UBERON:0009145!4.82e-18!24;UBERON:0000072!2.12e-15!27;UBERON:0002405!4.15e-14!70;UBERON:0001004!1.20e-13!42;UBERON:0000065!1.10e-12!41;UBERON:0000063!5.11e-12!35;UBERON:0005057!4.16e-11!51;UBERON:0001007!1.02e-10!128;UBERON:0001555!1.02e-10!128;UBERON:0007026!1.02e-10!128;UBERON:0004119!2.25e-10!130;UBERON:0000925!2.25e-10!130;UBERON:0006595!2.25e-10!130;UBERON:0004921!1.37e-09!126;UBERON:0004185!1.37e-09!126;UBERON:0003081!1.96e-09!88;UBERON:0001041!3.50e-07!92 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000331,1.26e-09,3;UBERON:0002116,1.26e-09,3;UBERON:0001204,1.26e-09,3;UBERON:0001168,1.26e-09,3;UBERON:0000029,4.10e-08,1;UBERON:0001097,4.10e-08,1;UBERON:0003968,4.10e-08,1;UBERON:0001467,4.10e-08,1;UBERON:0002108,1.94e-07,4;UBERON:0002384,6.08e-07,46 | |||
|phase1_expression=0,0,0,0,0,0,0,6.97265946584512,0.281577444303333,0.234064526321993,0.34243593645101,0,9.24483941628511,9.79108507092771,0,0.404950534779652,0,1.41957974411207,1.64537320326887,0.42438965179803,0,0.695036658406197,0.783599367416806,0.159992422793407,0.45881856213434,0,0,0,1.14014051673824,1.00812051903972,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167782606057736,4.35217285206807,7.73015738027667,0,0,0,0,0,0,0,0,0,0,0.7104801149461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.34255163915718,1.55362730188303,0.148442139064825,0,0,0,0,0,0,0,0,0.884610551949874,0,0,0,0,0,0,0.510914110417183,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32167513193519,0,0,0,0.128867461322093,0,0.22237804384487,0,0,0,0,0.397912944082302,0.58489226135736,0,0.216138049874694,0.199141273254367,0,0,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0.184753190166605,0,0,0,0.234690248288502,0,0,0,0,0.221464689648775,0,0,0.172684981865896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0.340439605753788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512612642393558,0.206386867963223,0.185194527369712,0.188368457004691,0,0.228778173206523,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,0,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,0.948033361884535,1.01362607645082,0.718976700153791,0.389762468933385,0.179026695667481,0.993406773906324,0.961563596159751,1.03382669022204,0.504832249740738,0.15241361331,0.403304740547362,0.974578807397524,0.384847366561318,0.584384510907845,0,0,0,0,0,0,0,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188218760830661,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p7@Fam189b | |||
}} |
Latest revision as of 20:21, 25 September 2015
Short description: | p7@Fam189b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Fam189b_5end |
Coexpression cluster: | MCL_coexpression_mm9:40 |
Association with transcript: | 0bp_to_ENSMUST00000155033_5end |
EntrezGene: | Fam189b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.20e-19 | 9 |
alpha-beta T cell | 1.20e-19 | 9 |
immature T cell | 1.20e-19 | 9 |
mature T cell | 1.20e-19 | 9 |
immature alpha-beta T cell | 1.20e-19 | 9 |
T cell | 4.41e-16 | 11 |
pro-T cell | 4.41e-16 | 11 |
lymphoid lineage restricted progenitor cell | 9.62e-15 | 12 |
CD4-positive, alpha-beta T cell | 1.92e-14 | 8 |
lymphocyte | 1.31e-13 | 13 |
common lymphoid progenitor | 1.31e-13 | 13 |
hematopoietic lineage restricted progenitor cell | 3.10e-13 | 25 |
leukocyte | 2.12e-10 | 17 |
nongranular leukocyte | 2.12e-10 | 17 |
hematopoietic cell | 3.15e-10 | 32 |
hematopoietic oligopotent progenitor cell | 3.15e-10 | 32 |
hematopoietic stem cell | 3.15e-10 | 32 |
hematopoietic multipotent progenitor cell | 3.15e-10 | 32 |
CD8-positive, alpha-beta T cell | 2.16e-08 | 1 |
regulatory T cell | 2.54e-08 | 1 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.54e-08 | 1 |
connective tissue cell | 6.08e-07 | 46 |
mesenchymal cell | 6.08e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
ileal mucosa | 1.26e-09 | 3 |
ileum | 1.26e-09 | 3 |
mucosa of small intestine | 1.26e-09 | 3 |
wall of small intestine | 1.26e-09 | 3 |
lymph node | 4.10e-08 | 1 |
axillary lymph node | 4.10e-08 | 1 |
peripheral lymph node | 4.10e-08 | 1 |
shoulder | 4.10e-08 | 1 |
small intestine | 1.94e-07 | 4 |
connective tissue | 6.08e-07 | 46 |