FFCP PHASE1:Mm9::chr13:21903606..21903623,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr13:21903606..21903623,+ to FFCP PHASE1:Mm9::chr13:21903606..21903623,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=100041230,319155,319156,319157,319158,319159,319160,319161,320332,326619,326620,69386,97122 | |EntrezGene=100041230,319155,319156,319157,319158,319159,319160,319161,320332,326619,326620,69386,97122 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=649 | |||
|TSSclassifier=NA | |||
|UniProt=P62806,B2RTM0 | |UniProt=P62806,B2RTM0 | ||
|association_with_transcript=0bp_to_ENSMUST00000104941,NM_001195421,uc007prr.2_5end | |||
|cluster_id=chr13:21903606..21903623,+ | |||
|description=CAGE_peak_6_at_Hist1h4c_5end,CAGE_peak_6_at_Hist1h4d_5end,CAGE_peak_6_at_Hist1h4f_5end,CAGE_peak_6_at_Hist1h4h_5end,CAGE_peak_6_at_Hist1h4i_5end,CAGE_peak_6_at_Hist1h4j_5end,CAGE_peak_6_at_Hist1h4k_5end,CAGE_peak_6_at_Hist1h4m_5end,CAGE_peak_6_at_Hist1h4n_5end,CAGE_peak_7_at_Hist1h4a_5end,CAGE_peak_7_at_Hist1h4b_5end,CAGE_peak_7_at_Hist2h4_5end,CAGE_peak_7_at_Hist4h4_5end | |||
|id=chr13:21903606..21903623,+ | |||
|ontology_enrichment_celltype=CL:0000063!3.51e-19!66;CL:0000988!8.31e-15!32;CL:0002032!8.31e-15!32;CL:0000037!8.31e-15!32;CL:0000566!8.31e-15!32;CL:0000837!8.31e-15!32;CL:0002031!4.63e-12!25;CL:0002320!2.61e-10!46;CL:0000134!2.61e-10!46;CL:0000049!8.34e-10!19;CL:0000144!3.84e-09!121;CL:0000012!3.84e-09!121;CL:0000219!8.82e-09!54;CL:0002076!4.16e-08!15;CL:0002371!4.35e-08!118;CL:0000763!5.71e-08!16;CL:0000548!5.83e-07!115;CL:0000004!5.83e-07!115;CL:0000255!5.83e-07!115;CL:0000738!8.87e-07!17;CL:0002087!8.87e-07!17;CL:0000838!9.43e-07!12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.24e-18,32;CL:0002032,2.24e-18,32;CL:0000037,2.24e-18,32;CL:0000837,2.24e-18,32;CL:0002031,9.35e-15,25;CL:0002320,6.94e-14,46;CL:0000134,6.94e-14,46;CL:0000219,9.40e-13,54;CL:0000049,1.39e-11,19;CL:0002076,9.22e-11,15;CL:0000066,3.12e-10,25;CL:0000763,4.40e-09,16;CL:0000838,7.28e-09,12;CL:0000738,3.11e-08,17;CL:0002087,3.11e-08,17;CL:0000084,3.95e-08,11;CL:0000827,3.95e-08,11;CL:0000223,6.08e-08,20;CL:0000542,7.11e-08,13;CL:0000051,7.11e-08,13;CL:0000034,1.24e-07,97;CL:0000839,2.90e-07,13;CL:0000050,4.66e-07,9;CL:0002563,7.29e-07,9;CL:0002251,7.29e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!2.61e-10!46;UBERON:0002193!1.58e-08!48;UBERON:0002390!3.51e-08!45;UBERON:0003061!3.51e-08!45 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,6.94e-14,46;UBERON:0000344,2.38e-09,15;UBERON:0001242,8.38e-08,13;UBERON:0001262,8.38e-08,13;UBERON:0004786,8.38e-08,13;UBERON:0002193,1.16e-07,48;UBERON:0002405,1.16e-07,48;UBERON:0004923,1.29e-07,24;UBERON:0000485,1.67e-07,11;UBERON:0002390,6.51e-07,45;UBERON:0003061,6.51e-07,45;UBERON:0003350,7.29e-07,9;UBERON:0004808,7.29e-07,9;UBERON:0001277,7.29e-07,9 | |||
|phase1_expression=7.68714466103011,17.7977457896074,12.739978702907,81.9678012641509,89.6603356603961,21.6564260766338,128.720564968135,68.1771147771523,11.9670413828917,14.5120006319636,40.0650045647682,14.9173937321279,73.7875146003497,51.2283558175325,0.999329285446988,2301.94131495493,3509.00238069078,145.585789312827,128.613338722183,374.311672885863,0.17008658030214,41.4043266507692,610.94630679597,147.033036547141,142.004344980578,28.711598205751,27.9995297503399,23.270893130076,121.424965032623,31.2517360902314,46.7851377482693,2053.05416729499,11.6862309641068,3328.11530132421,28.5963103553762,80.1250990627933,41.2422099649986,105.469970945701,278.155382650473,212.550640053362,86.4700287405591,133.876915051855,128.174733200225,0,0,0,0,0.436050312760893,0,0,0,4.31257693094915,113.085476482914,43.5217285206807,59.1525086490737,0.257259436035947,0,0,0.202316460859598,0,0.633831403506179,0,0,0.449949858640699,0.988866362566974,0,1.19840044207362,0.384218305321555,0.103689612308478,0.135005938331691,0.630974884054146,0,0,0.367472397644862,0.191690942036473,0.919218786610021,0,0,0,0.131886287730194,0.365950574409639,0,0,0,0.15279824777681,0.589257170947335,0.284743361598206,0.186399445825301,24.3838342532853,85.5470060408812,29.5661778475711,33.5565312022741,0,0,0,0,0,0.340860645156116,151.455240683472,186.91663491597,10.9857867425811,33.3648841277226,5.09610479413291,14.2213340630666,283.386772683679,234.611235429941,239.113062491993,0,0,0,0.346970653532272,0,0,0.301445281105245,0.352766121407114,0.125666591329675,0,0,2.65383165584962,0.808834249737046,1.10420759230197,0.969750506270444,0,0.292780797011547,0,0.510914110417183,169.778031424889,325.147280198427,154.263255666701,0,0,0.125654352112864,0,0,0.20778804455956,0,0,0.995255764880744,0.505445516867349,0,0.260240885925407,0.459804208866946,0.720248519221397,0.30140963567143,0.408218994907967,0.512454881139399,0.655912071918102,0,0.646703978798527,0,0.175951124163949,0.43839146485515,0,0.348252166522167,0.205782136407943,0,247.881255121572,406.60969324125,1.13665399758237,0.621377317606506,0,0.180062061461015,0.473489471170421,0.196764231747404,0,0,0.268273401399619,0.233530684734339,0.329119699826961,0.32833492815819,0,0,0,0.134206418760372,0.210289948564127,0.205809224758569,0,0,0.213288250535234,0.232236671860439,0.902072229254653,0,0.22237804384487,0.190225626112559,0.474529061544512,0.329397909448022,0.502670417600539,0.795825888164603,0.38992817423824,0.898819408654221,0,0,1.32767530667157,0.342745537829186,1.1270773567308,0,0,0.140271639780637,0.126473074248515,0,0.156998727841375,0,0,0.166845105716094,1.57247196090562,0.899448449539415,0.811440485554012,0.964708639009667,1.78238096246994,1.15078454980324,0.486405680325106,1.09824565275233,1.43768206527355,0,0.312037673114561,0,0,0,0.184753190166605,1.13694847062291,0.651859905768103,0.169745085775188,0.234690248288502,0.335012514883631,0.476087281772027,0,0,0,0,0,0.172684981865896,0,33.1740824666399,21.2123216689297,0,0,0.160550589987792,0,0.163934945376675,0,0.315508219416257,0,0.215423397732799,0,0.445597348164788,0.283076530788832,0,0,0,0,0.141940085208269,0.178065603667255,0.325773918707152,0,0,0.485561272309963,0.302323556964751,0.188605079755898,0.295301892880773,0,0,0.363533729477506,0,0.316036757935816,0,0,0,0.18006109403131,0.388076051348264,0.214337035031592,0,0,0,0.608929898229199,0.704015124191131,0.21183207086382,0.220528398054962,0,0.161464426695906,0.0603129249281559,0.119372344003136,0,0.291480836629851,0,2.22132145037209,0.412773735926445,1.66675074632741,2.0720530270516,1.23024804948923,2.51655990527175,64.591803397665,67.0367456630322,68.5471870069942,0,0.474503990371703,0,0.108005340821801,0.418176592028937,0,0.809186078308924,0.0826534557253359,0,0,0,0.56369293868419,0.299033092087958,0,0.194451188344048,0.129159823477731,0.506868376472335,0.117357238645754,0.781226309063701,0.943734099831398,0,0,0,0.608175645870493,0.718976700153791,0.51968329191118,1.07416017400489,0,1.32214994471966,0.590758108698309,1.41353029927407,0.457240839929999,1.10908803650525,1.26695244961678,0.481059208201647,0.350630706544707,0,228.201560068538,195.12763812561,193.06730881869,0.19318959403219,0,0,0.214368379079066,0,1.6942555278512,1.38097570952153,1.14579102687879,26.8090964456153,0,0,2.70009000092722,0,0,0,0.415149390336707,0.399024873401031,0.341467211508268,0.972426868273176,0.419226325255965,0.183843508450014,9.55660929546946,10.0957178047058,7.06022261101994,10.6132828940795,9.88569269571935,11.1289541417785,16.4809053146993,11.8446531949008,14.4737381768145,4.28664322154766,5.56244764535306,8.48800570040302,7.00546031365621,1.91358596174717,13.7147700954166,10.4710725634009,9.29901140794552,12.4997918303803,7.71696919405711,15.3152440283934,6.76833499629258,0.789209134313529,10.4569167661314,1.12228454331548,4.74540072496697,11.1310065084387,1.63692417267876,11.1554525653896,0,0.749431733813838,0.467863216890817,0.214871054048298,0.191288332068843,0,0.927471342481686 | |phase1_expression=7.68714466103011,17.7977457896074,12.739978702907,81.9678012641509,89.6603356603961,21.6564260766338,128.720564968135,68.1771147771523,11.9670413828917,14.5120006319636,40.0650045647682,14.9173937321279,73.7875146003497,51.2283558175325,0.999329285446988,2301.94131495493,3509.00238069078,145.585789312827,128.613338722183,374.311672885863,0.17008658030214,41.4043266507692,610.94630679597,147.033036547141,142.004344980578,28.711598205751,27.9995297503399,23.270893130076,121.424965032623,31.2517360902314,46.7851377482693,2053.05416729499,11.6862309641068,3328.11530132421,28.5963103553762,80.1250990627933,41.2422099649986,105.469970945701,278.155382650473,212.550640053362,86.4700287405591,133.876915051855,128.174733200225,0,0,0,0,0.436050312760893,0,0,0,4.31257693094915,113.085476482914,43.5217285206807,59.1525086490737,0.257259436035947,0,0,0.202316460859598,0,0.633831403506179,0,0,0.449949858640699,0.988866362566974,0,1.19840044207362,0.384218305321555,0.103689612308478,0.135005938331691,0.630974884054146,0,0,0.367472397644862,0.191690942036473,0.919218786610021,0,0,0,0.131886287730194,0.365950574409639,0,0,0,0.15279824777681,0.589257170947335,0.284743361598206,0.186399445825301,24.3838342532853,85.5470060408812,29.5661778475711,33.5565312022741,0,0,0,0,0,0.340860645156116,151.455240683472,186.91663491597,10.9857867425811,33.3648841277226,5.09610479413291,14.2213340630666,283.386772683679,234.611235429941,239.113062491993,0,0,0,0.346970653532272,0,0,0.301445281105245,0.352766121407114,0.125666591329675,0,0,2.65383165584962,0.808834249737046,1.10420759230197,0.969750506270444,0,0.292780797011547,0,0.510914110417183,169.778031424889,325.147280198427,154.263255666701,0,0,0.125654352112864,0,0,0.20778804455956,0,0,0.995255764880744,0.505445516867349,0,0.260240885925407,0.459804208866946,0.720248519221397,0.30140963567143,0.408218994907967,0.512454881139399,0.655912071918102,0,0.646703978798527,0,0.175951124163949,0.43839146485515,0,0.348252166522167,0.205782136407943,0,247.881255121572,406.60969324125,1.13665399758237,0.621377317606506,0,0.180062061461015,0.473489471170421,0.196764231747404,0,0,0.268273401399619,0.233530684734339,0.329119699826961,0.32833492815819,0,0,0,0.134206418760372,0.210289948564127,0.205809224758569,0,0,0.213288250535234,0.232236671860439,0.902072229254653,0,0.22237804384487,0.190225626112559,0.474529061544512,0.329397909448022,0.502670417600539,0.795825888164603,0.38992817423824,0.898819408654221,0,0,1.32767530667157,0.342745537829186,1.1270773567308,0,0,0.140271639780637,0.126473074248515,0,0.156998727841375,0,0,0.166845105716094,1.57247196090562,0.899448449539415,0.811440485554012,0.964708639009667,1.78238096246994,1.15078454980324,0.486405680325106,1.09824565275233,1.43768206527355,0,0.312037673114561,0,0,0,0.184753190166605,1.13694847062291,0.651859905768103,0.169745085775188,0.234690248288502,0.335012514883631,0.476087281772027,0,0,0,0,0,0.172684981865896,0,33.1740824666399,21.2123216689297,0,0,0.160550589987792,0,0.163934945376675,0,0.315508219416257,0,0.215423397732799,0,0.445597348164788,0.283076530788832,0,0,0,0,0.141940085208269,0.178065603667255,0.325773918707152,0,0,0.485561272309963,0.302323556964751,0.188605079755898,0.295301892880773,0,0,0.363533729477506,0,0.316036757935816,0,0,0,0.18006109403131,0.388076051348264,0.214337035031592,0,0,0,0.608929898229199,0.704015124191131,0.21183207086382,0.220528398054962,0,0.161464426695906,0.0603129249281559,0.119372344003136,0,0.291480836629851,0,2.22132145037209,0.412773735926445,1.66675074632741,2.0720530270516,1.23024804948923,2.51655990527175,64.591803397665,67.0367456630322,68.5471870069942,0,0.474503990371703,0,0.108005340821801,0.418176592028937,0,0.809186078308924,0.0826534557253359,0,0,0,0.56369293868419,0.299033092087958,0,0.194451188344048,0.129159823477731,0.506868376472335,0.117357238645754,0.781226309063701,0.943734099831398,0,0,0,0.608175645870493,0.718976700153791,0.51968329191118,1.07416017400489,0,1.32214994471966,0.590758108698309,1.41353029927407,0.457240839929999,1.10908803650525,1.26695244961678,0.481059208201647,0.350630706544707,0,228.201560068538,195.12763812561,193.06730881869,0.19318959403219,0,0,0.214368379079066,0,1.6942555278512,1.38097570952153,1.14579102687879,26.8090964456153,0,0,2.70009000092722,0,0,0,0.415149390336707,0.399024873401031,0.341467211508268,0.972426868273176,0.419226325255965,0.183843508450014,9.55660929546946,10.0957178047058,7.06022261101994,10.6132828940795,9.88569269571935,11.1289541417785,16.4809053146993,11.8446531949008,14.4737381768145,4.28664322154766,5.56244764535306,8.48800570040302,7.00546031365621,1.91358596174717,13.7147700954166,10.4710725634009,9.29901140794552,12.4997918303803,7.71696919405711,15.3152440283934,6.76833499629258,0.789209134313529,10.4569167661314,1.12228454331548,4.74540072496697,11.1310065084387,1.63692417267876,11.1554525653896,0,0.749431733813838,0.467863216890817,0.214871054048298,0.191288332068843,0,0.927471342481686 | ||
|short_description=p6@Hist1h4c,p6@Hist1h4d,p6@Hist1h4f,p6@Hist1h4h,p6@Hist1h4i,p6@Hist1h4j,p6@Hist1h4k,p6@Hist1h4m,p6@Hist1h4n,p7@Hist1h4a,p7@Hist1h4b,p7@Hist2h4,p7@Hist4h4 | |||
}} | }} |
Latest revision as of 06:44, 27 September 2015
Short description: | p6@Hist1h4c, p6@Hist1h4d, p6@Hist1h4f, p6@Hist1h4h, p6@Hist1h4i, p6@Hist1h4j, p6@Hist1h4k, p6@Hist1h4m, p6@Hist1h4n, p7@Hist1h4a, p7@Hist1h4b, p7@Hist2h4, p7@Hist4h4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Hist1h4c_5end, CAGE_peak_6_at_Hist1h4d_5end, CAGE_peak_6_at_Hist1h4f_5end, CAGE_peak_6_at_Hist1h4h_5end, CAGE_peak_6_at_Hist1h4i_5end, CAGE_peak_6_at_Hist1h4j_5end, CAGE_peak_6_at_Hist1h4k_5end, CAGE_peak_6_at_Hist1h4m_5end, CAGE_peak_6_at_Hist1h4n_5end, CAGE_peak_7_at_Hist1h4a_5end, CAGE_peak_7_at_Hist1h4b_5end, CAGE_peak_7_at_Hist2h4_5end, CAGE_peak_7_at_Hist4h4_5end |
Coexpression cluster: | MCL_coexpression_mm9:649 |
Association with transcript: | 0bp_to_ENSMUST00000104941, NM_001195421, uc007prr.2_5end |
EntrezGene: | 100041230,319155,319156,319157,319158,319159,319160,319161,320332,326619,326620,69386,97122 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.24e-18 | 32 |
hematopoietic oligopotent progenitor cell | 2.24e-18 | 32 |
hematopoietic stem cell | 2.24e-18 | 32 |
hematopoietic multipotent progenitor cell | 2.24e-18 | 32 |
hematopoietic lineage restricted progenitor cell | 9.35e-15 | 25 |
connective tissue cell | 6.94e-14 | 46 |
mesenchymal cell | 6.94e-14 | 46 |
motile cell | 9.40e-13 | 54 |
common myeloid progenitor | 1.39e-11 | 19 |
endo-epithelial cell | 9.22e-11 | 15 |
epithelial cell | 3.12e-10 | 25 |
myeloid cell | 4.40e-09 | 16 |
lymphoid lineage restricted progenitor cell | 7.28e-09 | 12 |
leukocyte | 3.11e-08 | 17 |
nongranular leukocyte | 3.11e-08 | 17 |
T cell | 3.95e-08 | 11 |
pro-T cell | 3.95e-08 | 11 |
endodermal cell | 6.08e-08 | 20 |
lymphocyte | 7.11e-08 | 13 |
common lymphoid progenitor | 7.11e-08 | 13 |
stem cell | 1.24e-07 | 97 |
myeloid lineage restricted progenitor cell | 2.90e-07 | 13 |
megakaryocyte-erythroid progenitor cell | 4.66e-07 | 9 |
intestinal epithelial cell | 7.29e-07 | 9 |
epithelial cell of alimentary canal | 7.29e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 6.94e-14 | 46 |
mucosa | 2.38e-09 | 15 |
intestinal mucosa | 8.38e-08 | 13 |
wall of intestine | 8.38e-08 | 13 |
gastrointestinal system mucosa | 8.38e-08 | 13 |
hemolymphoid system | 1.16e-07 | 48 |
immune system | 1.16e-07 | 48 |
organ component layer | 1.29e-07 | 24 |
simple columnar epithelium | 1.67e-07 | 11 |
hematopoietic system | 6.51e-07 | 45 |
blood island | 6.51e-07 | 45 |
epithelium of mucosa | 7.29e-07 | 9 |
gastrointestinal system epithelium | 7.29e-07 | 9 |
intestinal epithelium | 7.29e-07 | 9 |