FFCP PHASE1:Mm9::chr8:12385739..12385750,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=434280 | |EntrezGene=434280 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=184 | |||
|TSSclassifier=NA | |||
|UniProt=E9Q7F6 | |UniProt=E9Q7F6 | ||
|association_with_transcript=-20bp_to_ENSMUST00000080795,NR_027975,uc012fzm.1_5end | |association_with_transcript=-20bp_to_ENSMUST00000080795,NR_027975,uc012fzm.1_5end | ||
|cluster_id=chr8:12385739..12385750,+ | |||
|description=CAGE_peak_5_at_Gm5607_5end | |description=CAGE_peak_5_at_Gm5607_5end | ||
|id=chr8:12385739..12385750,+ | |id=chr8:12385739..12385750,+ | ||
|ontology_enrichment_celltype=CL:0000117!2.85e-16!23;CL:0000337!2.85e-16!23;CL:0002609!1.89e-13!6;CL:0000540!2.59e-10!33;CL:0000047!2.59e-10!33;CL:0000031!2.59e-10!33;CL:0000404!2.59e-10!33;CL:0002319!1.83e-08!43;CL:0002608!2.15e-08!3;CL:0000393!3.17e-08!39;CL:0000211!3.17e-08!39;CL:0000221!3.41e-08!44;CL:0000133!3.41e-08!44;CL:0002613!2.08e-07!3;CL:0000055!8.47e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0002608,1.18e-44,3;CL:0002609,8.13e-23,6;CL:0000117,9.84e-11,23;CL:0000337,9.84e-11,23;CL:0000540,1.24e-07,33;CL:0000047,1.24e-07,33;CL:0000031,1.24e-07,33;CL:0000404,1.24e-07,33 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!1.21e-20!49;UBERON:0002780!7.65e-19!39;UBERON:0001890!7.65e-19!39;UBERON:0006240!7.65e-19!39;UBERON:0003080!3.05e-18!40;UBERON:0000033!4.28e-18!63;UBERON:0002616!1.27e-17!49;UBERON:0000955!3.72e-17!50;UBERON:0006238!3.72e-17!50;UBERON:0002791!2.03e-16!29;UBERON:0003528!2.03e-16!29;UBERON:0001893!2.03e-16!29;UBERON:0001049!1.66e-14!52;UBERON:0005068!1.66e-14!52;UBERON:0006241!1.66e-14!52;UBERON:0007135!1.66e-14!52;UBERON:0002346!8.27e-14!71;UBERON:0003075!8.27e-14!71;UBERON:0007284!8.27e-14!71;UBERON:0002020!2.05e-13!34;UBERON:0002420!4.52e-13!8;UBERON:0007245!4.52e-13!8;UBERON:0010009!4.52e-13!8;UBERON:0010011!4.52e-13!8;UBERON:0000454!4.52e-13!8;UBERON:0001017!1.87e-12!73;UBERON:0005743!1.87e-12!73;UBERON:0000073!5.82e-12!75;UBERON:0001016!5.82e-12!75;UBERON:0000369!1.25e-11!5;UBERON:0002435!1.25e-11!5;UBERON:0000204!1.25e-11!5;UBERON:0010082!1.25e-11!5;UBERON:0007811!1.56e-11!86;UBERON:0004121!9.53e-11!102;UBERON:0000924!9.53e-11!102;UBERON:0006601!9.53e-11!102;UBERON:0000153!5.16e-10!94;UBERON:0001954!8.68e-09!7;UBERON:0003022!8.68e-09!7;UBERON:0002421!8.68e-09!7;UBERON:0000349!8.68e-09!7;UBERON:0002600!8.68e-09!7;UBERON:0000956!3.37e-07!21;UBERON:0001869!3.37e-07!21;UBERON:0000203!3.37e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001954,7.62e-34,7;UBERON:0003022,7.62e-34,7;UBERON:0002421,7.62e-34,7;UBERON:0000349,7.62e-34,7;UBERON:0002600,7.62e-34,7;UBERON:0002619,2.38e-14,17;UBERON:0003528,4.74e-13,29;UBERON:0002791,4.74e-13,29;UBERON:0001893,4.74e-13,29;UBERON:0000956,9.92e-12,21;UBERON:0001869,9.92e-12,21;UBERON:0000203,9.92e-12,21;UBERON:0002020,3.37e-11,34;UBERON:0000073,4.19e-10,54;UBERON:0002780,8.12e-10,39;UBERON:0001890,8.12e-10,39;UBERON:0006240,8.12e-10,39;UBERON:0003080,1.40e-09,40;UBERON:0002616,2.22e-08,46;UBERON:0000955,3.29e-08,47;UBERON:0006238,3.29e-08,47;UBERON:0003056,6.88e-08,49;UBERON:0001017,1.48e-07,73;UBERON:0001049,1.88e-07,52;UBERON:0005068,1.88e-07,52;UBERON:0006241,1.88e-07,52;UBERON:0007135,1.88e-07,52;UBERON:0001016,2.31e-07,75 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872100625521786,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0,0.633831403506179,0,0,0,0,0,0,0,0.103689612308478,0.270011876663381,0.210324961351382,0,0,3.1847607795888,5.07980996396653,5.51531271966013,1.10115880999389,0,0,0.263772575460388,0.365950574409639,0.52091337055676,0.279182999001381,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.457500602818626,2.01046963380583,0.173824320192276,0,0,0.648965052271031,0,0,0,0,0.130120442962704,0,0.180062129805349,0.150704817835715,0,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,1.44066457330998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540183282093931,0.517434735131018,0.428674070063185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0,0.170733605754134,0,0,0.183843508450014,0.44449345560323,0,0,0,0,0,0.0936415074698824,0.0640251524048693,0.0574354689556133,0,0.115884325944855,0.192909220463705,0,0,0,0,0,0,0.0941093804153306,0,0,0,0.271608227691724,0,0,0.197008964751127,0,0.309873682371932,0.192906610981141,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872100625521786,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0,0.633831403506179,0,0,0,0,0,0,0,0.103689612308478,0.270011876663381,0.210324961351382,0,0,3.1847607795888,5.07980996396653,5.51531271966013,1.10115880999389,0,0,0.263772575460388,0.365950574409639,0.52091337055676,0.279182999001381,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.457500602818626,2.01046963380583,0.173824320192276,0,0,0.648965052271031,0,0,0,0,0.130120442962704,0,0.180062129805349,0.150704817835715,0,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,1.44066457330998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540183282093931,0.517434735131018,0.428674070063185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0,0.170733605754134,0,0,0.183843508450014,0.44449345560323,0,0,0,0,0,0.0936415074698824,0.0640251524048693,0.0574354689556133,0,0.115884325944855,0.192909220463705,0,0,0,0,0,0,0.0941093804153306,0,0,0,0.271608227691724,0,0,0.197008964751127,0,0.309873682371932,0.192906610981141,0,0,0,0,0,0 | ||
|short_description=p5@Gm5607 | |short_description=p5@Gm5607 | ||
}} | }} |
Latest revision as of 15:42, 1 October 2015
Short description: | p5@Gm5607 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Gm5607_5end |
Coexpression cluster: | MCL_coexpression_mm9:184 |
Association with transcript: | -20bp_to_ENSMUST00000080795, NR_027975, uc012fzm.1_5end |
EntrezGene: | Gm5607 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hippocampal neuron | 1.18e-44 | 3 |
neuron of cerebral cortex | 8.13e-23 | 6 |
CNS neuron (sensu Vertebrata) | 9.84e-11 | 23 |
neuroblast (sensu Vertebrata) | 9.84e-11 | 23 |
neuron | 1.24e-07 | 33 |
neuronal stem cell | 1.24e-07 | 33 |
neuroblast | 1.24e-07 | 33 |
electrically signaling cell | 1.24e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
Ammon's horn | 7.62e-34 | 7 |
lobe parts of cerebral cortex | 7.62e-34 | 7 |
hippocampal formation | 7.62e-34 | 7 |
limbic system | 7.62e-34 | 7 |
limbic lobe | 7.62e-34 | 7 |
regional part of cerebral cortex | 2.38e-14 | 17 |
brain grey matter | 4.74e-13 | 29 |
regional part of telencephalon | 4.74e-13 | 29 |
telencephalon | 4.74e-13 | 29 |
cerebral cortex | 9.92e-12 | 21 |
cerebral hemisphere | 9.92e-12 | 21 |
pallium | 9.92e-12 | 21 |
gray matter | 3.37e-11 | 34 |
regional part of nervous system | 4.19e-10 | 54 |
regional part of forebrain | 8.12e-10 | 39 |
forebrain | 8.12e-10 | 39 |
future forebrain | 8.12e-10 | 39 |
anterior neural tube | 1.40e-09 | 40 |
regional part of brain | 2.22e-08 | 46 |
brain | 3.29e-08 | 47 |
future brain | 3.29e-08 | 47 |
pre-chordal neural plate | 6.88e-08 | 49 |
central nervous system | 1.48e-07 | 73 |
neural tube | 1.88e-07 | 52 |
neural rod | 1.88e-07 | 52 |
future spinal cord | 1.88e-07 | 52 |
neural keel | 1.88e-07 | 52 |
nervous system | 2.31e-07 | 75 |