FF:10016-101C7: Difference between revisions

Latest revision as of 12:14, 3 June 2020

Name:	heart, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10621
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	heart
dev stage	70,73,74 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	0910061 -7
catalog number	Cat:AM6000 Lot:0910061 -7
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005389

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10621		CAGE		DRX008665		DRR009537

Accession ID Hg19

Library id		BAM		CTSS
CNhs10621		DRZ000962		DRZ002347

Accession ID Hg38

Library id		BAM		CTSS
CNhs10621		DRZ012312		DRZ013697

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10015		download		download		download		download

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0352
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.437
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.325
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0693
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.436
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0875
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0.223
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0.847
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.709
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.0875
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.382
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0875
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.7
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.209
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0478
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0875
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.00267
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0663
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.582
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.04
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0875
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0875
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.16
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0508
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	1.056
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0.325
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0317
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0.0875
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10621

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0928
MA0003.1	MA0003.1	0.128
MA0004.1	MA0004.1	0.0616
MA0006.1	MA0006.1	0.193
MA0007.1	MA0007.1	0.273
MA0009.1	MA0009.1	0.0313
MA0014.1	MA0014.1	0.958
MA0017.1	MA0017.1	0.209
MA0018.2	MA0018.2	0.279
MA0019.1	MA0019.1	0.131
MA0024.1	MA0024.1	0.00477
MA0025.1	MA0025.1	0.792
MA0027.1	MA0027.1	0.92
MA0028.1	MA0028.1	1.3126e-7
MA0029.1	MA0029.1	0.0694
MA0030.1	MA0030.1	0.428
MA0031.1	MA0031.1	0.197
MA0035.2	MA0035.2	1.67097e-5
MA0038.1	MA0038.1	0.1
MA0039.2	MA0039.2	0.978
MA0040.1	MA0040.1	0.773
MA0041.1	MA0041.1	0.00966
MA0042.1	MA0042.1	0.222
MA0043.1	MA0043.1	0.153
MA0046.1	MA0046.1	0.264
MA0047.2	MA0047.2	0.605
MA0048.1	MA0048.1	0.00853
MA0050.1	MA0050.1	0.0205
MA0051.1	MA0051.1	0.615
MA0052.1	MA0052.1	1.25486e-48
MA0055.1	MA0055.1	0.00359
MA0057.1	MA0057.1	0.713
MA0058.1	MA0058.1	0.0153
MA0059.1	MA0059.1	0.0043
MA0060.1	MA0060.1	0.0391
MA0061.1	MA0061.1	3.57798e-4
MA0062.2	MA0062.2	3.42014e-12
MA0065.2	MA0065.2	0.665
MA0066.1	MA0066.1	0.721
MA0067.1	MA0067.1	0.638
MA0068.1	MA0068.1	0.00277
MA0069.1	MA0069.1	0.636
MA0070.1	MA0070.1	0.856
MA0071.1	MA0071.1	0.0591
MA0072.1	MA0072.1	0.74
MA0073.1	MA0073.1	0.884
MA0074.1	MA0074.1	0.875
MA0076.1	MA0076.1	4.45146e-10
MA0077.1	MA0077.1	0.285
MA0078.1	MA0078.1	0.6
MA0079.2	MA0079.2	0.0514
MA0080.2	MA0080.2	0.00197
MA0081.1	MA0081.1	0.13
MA0083.1	MA0083.1	1.58478e-5
MA0084.1	MA0084.1	0.925
MA0087.1	MA0087.1	0.468
MA0088.1	MA0088.1	0.00504
MA0090.1	MA0090.1	0.00291
MA0091.1	MA0091.1	0.117
MA0092.1	MA0092.1	0.0491
MA0093.1	MA0093.1	0.0431
MA0099.2	MA0099.2	3.04753e-9
MA0100.1	MA0100.1	0.0319
MA0101.1	MA0101.1	0.0528
MA0102.2	MA0102.2	0.443
MA0103.1	MA0103.1	0.116
MA0104.2	MA0104.2	2.87239e-4
MA0105.1	MA0105.1	9.88699e-6
MA0106.1	MA0106.1	0.159
MA0107.1	MA0107.1	0.0272
MA0108.2	MA0108.2	4.05517e-19
MA0111.1	MA0111.1	0.999
MA0112.2	MA0112.2	0.404
MA0113.1	MA0113.1	0.00273
MA0114.1	MA0114.1	0.807
MA0115.1	MA0115.1	0.219
MA0116.1	MA0116.1	0.00431
MA0117.1	MA0117.1	0.461
MA0119.1	MA0119.1	0.597
MA0122.1	MA0122.1	0.0341
MA0124.1	MA0124.1	0.334
MA0125.1	MA0125.1	0.837
MA0131.1	MA0131.1	0.0436
MA0135.1	MA0135.1	0.587
MA0136.1	MA0136.1	3.4664e-7
MA0137.2	MA0137.2	0.177
MA0138.2	MA0138.2	0.485
MA0139.1	MA0139.1	0.0617
MA0140.1	MA0140.1	0.0182
MA0141.1	MA0141.1	2.08354e-5
MA0142.1	MA0142.1	0.0726
MA0143.1	MA0143.1	0.4
MA0144.1	MA0144.1	0.58
MA0145.1	MA0145.1	0.094
MA0146.1	MA0146.1	0.543
MA0147.1	MA0147.1	1.10722e-4
MA0148.1	MA0148.1	0.433
MA0149.1	MA0149.1	0.448
MA0150.1	MA0150.1	0.0775
MA0152.1	MA0152.1	0.458
MA0153.1	MA0153.1	0.644
MA0154.1	MA0154.1	0.86
MA0155.1	MA0155.1	0.312
MA0156.1	MA0156.1	1.00887e-7
MA0157.1	MA0157.1	0.462
MA0159.1	MA0159.1	0.452
MA0160.1	MA0160.1	2.48134e-5
MA0162.1	MA0162.1	0.998
MA0163.1	MA0163.1	1.03907e-7
MA0164.1	MA0164.1	0.315
MA0258.1	MA0258.1	0.156
MA0259.1	MA0259.1	0.0412

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10621

Novel motif	Logo	P-value
1	1	0.49
10	10	0.0285
100	100	0.617
101	101	0.887
102	102	0.826
103	103	0.113
104	104	0.474
105	105	0.158
106	106	0.548
107	107	0.146
108	108	0.542
109	109	0.418
11	11	0.496
110	110	0.108
111	111	0.138
112	112	0.45
113	113	0.796
114	114	0.553
115	115	0.722
116	116	0.445
117	117	0.0174
118	118	0.0158
119	119	0.322
12	12	0.877
120	120	0.00514
121	121	0.904
122	122	0.708
123	123	0.00596
124	124	0.844
125	125	0.578
126	126	0.789
127	127	0.6
128	128	0.263
129	129	0.43
13	13	0.117
130	130	0.339
131	131	0.0131
132	132	0.168
133	133	0.19
134	134	0.0139
135	135	0.129
136	136	0.63
137	137	0.979
138	138	0.994
139	139	0.489
14	14	0.454
140	140	0.861
141	141	0.983
142	142	0.994
143	143	0.153
144	144	0.946
145	145	0.767
146	146	0.207
147	147	0.0493
148	148	0.529
149	149	0.407
15	15	0.854
150	150	0.835
151	151	0.418
152	152	0.204
153	153	0.37
154	154	0.673
155	155	0.238
156	156	0.229
157	157	0.848
158	158	0.228
159	159	0.332
16	16	0.455
160	160	0.802
161	161	0.339
162	162	0.736
163	163	0.507
164	164	0.00587
165	165	0.775
166	166	0.0397
167	167	0.0587
168	168	0.259
169	169	0.977
17	17	0.836
18	18	0.495
19	19	0.277
2	2	0.218
20	20	0.0453
21	21	0.279
22	22	0.205
23	23	0.0688
24	24	0.0929
25	25	0.608
26	26	0.0308
27	27	0.956
28	28	0.674
29	29	0.00239
3	3	0.229
30	30	0.0894
31	31	0.847
32	32	0.442
33	33	0.286
34	34	0.0559
35	35	0.674
36	36	0.0894
37	37	0.372
38	38	0.839
39	39	0.125
4	4	0.668
40	40	0.0664
41	41	0.679
42	42	0.279
43	43	0.848
44	44	0.571
45	45	0.132
46	46	0.389
47	47	0.16
48	48	0.133
49	49	0.978
5	5	0.716
50	50	0.709
51	51	0.676
52	52	0.0548
53	53	0.911
54	54	0.524
55	55	0.233
56	56	0.791
57	57	0.237
58	58	0.648
59	59	0.609
6	6	0.714
60	60	0.322
61	61	0.0697
62	62	0.958
63	63	0.905
64	64	0.479
65	65	0.303
66	66	0.017
67	67	0.19
68	68	0.878
69	69	0.757
7	7	0.856
70	70	0.164
71	71	0.0105
72	72	0.938
73	73	0.681
74	74	0.0661
75	75	0.0171
76	76	0.0783
77	77	0.208
78	78	0.789
79	79	0.856
8	8	0.676
80	80	0.165
81	81	0.699
82	82	0.806
83	83	0.614
84	84	0.897
85	85	0.0433
86	86	0.754
87	87	0.263
88	88	0.777
89	89	0.276
9	9	0.376
90	90	0.0776
91	91	0.131
92	92	0.615
93	93	0.61
94	94	0.0502
95	95	0.0335
96	96	0.806
97	97	0.381
98	98	0.17
99	99	0.0921

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10621

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010016 human heart - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0007100 (primary circulatory organ)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010016 (human heart - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008556
+|DRA_sample_Accession=CAGE@SAMD00005389
-|accession_numbers=CAGE;DRX008665;DRR009537;DRZ000962;DRZ002347
+|HumanCAGEScanFiles=NCig10015;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/heart%252c%2520adult%252c%2520pool1.NCig10015.10016-101C7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/heart%252c%2520adult%252c%2520pool1.NCig10015.10016-101C7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/heart%252c%2520adult%252c%2520pool1.NCig10015.10016-101C7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/heart%252c%2520adult%252c%2520pool1.NCig10015.10016-101C7.hg19.GCTATA.pairs.bed.gz
+|accession_numbers=CAGE;DRX008665;DRR009537;DRZ000962;DRZ002347;DRZ012312;DRZ013697
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0007100,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0001009
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 10: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr15:42749722..42749739,-!p2@ZFP106!2.39!423.58!ZFP106;;chr5:172662197..172662216,-!p1@NKX2-5!2.34!217.37!NKX2-5;;chr12:52437488..52437507,+!p2@NR4A1!2.29!193.94!NR4A1;;chr4:174451370..174451387,-!p1@HAND2!2.13!132.79!HAND2;;chr7:35293685..35293718,-!p1@TBX20!2.11!127.21!TBX20;;chr20:62680984..62680999,-!p1@SOX18!1.96!118.73!SOX18;;chr8:11561684..11561751,+!p1@GATA4!1.93!83.69!GATA4;;chr14:105935396..105935413,+!p4@MTA1!1.84!68.51!MTA1;;chr12:10875658..10875708,-!p2@CSDA!1.76!125.65!CSDA;;chr19:46801639..46801699,+!p1@HIF3A!1.74!54.01!HIF3A;;chr11:47400078..47400106,-!p1@SPI1!1.74!53.78!SPI1;;chr8:55370487..55370503,+!p1@SOX17!1.72!50.88!SOX17;;chr4:174451350..174451363,-!p3@HAND2!1.66!45.08!HAND2;;chr1:40105299..40105326,-!p1@HEYL!1.66!44.41!HEYL;;chr6:134210243..134210257,+!p1@TCF21!1.63!41.29!TCF21;;chr1:214161272..214161322,+!p1@PROX1!1.62!56.02!PROX1;;chr11:113930425..113930471,+!p1@ZBTB16!1.55!49.10!ZBTB16;;chr6:126070769..126070801,+!p1@HEY2!1.55!39.72!HEY2;;chr8:10588010..10588030,-!p1@SOX7!1.46!27.67!SOX7;;chr5:172662303..172662320,-!p2@NKX2-5!1.45!27.00!NKX2-5;;chr3:126076242..126076257,-!p1@KLF15!1.36!27.23!KLF15;;chr21:39870339..39870443,-!p1@ERG!1.36!22.09!ERG;;chr14:105935426..105935440,+!p9@MTA1!1.32!20.09!MTA1;;chr11:46337652..46337682,+!p16@CREB3L1!1.31!19.19!CREB3L1;;chr3:69788576..69788648,+!p1@MITF!1.29!95.96!MITF;;chr18:19749386..19749404,+!p2@GATA6!1.29!26.11!GATA6;;chr8:25902876..25902936,-!p1@EBF2!1.28!18.08!EBF2;;chr4:174450089..174450153,-!p2@HAND2!1.28!17.85!HAND2;;chr18:19749541..19749557,+!p1@GATA6!1.27!54.90!GATA6;;chr5:153857778..153857794,-!p1@HAND1!1.27!17.63!HAND1;;chr9:77112244..77112262,+!p1@RORB!1.25!18.75!RORB;;chr3:69915385..69915438,+!p3@MITF!1.25!16.74!MITF;;chr16:54320617..54320643,-!p3@IRX3!1.24!20.75!IRX3;;chr1:61548069..61548102,+!p3@NFIA!1.23!38.39!NFIA;;chr19:46800289..46800327,+!p2@HIF3A!1.23!16.07!HIF3A;;chr1:170633348..170633399,+!p2@PRRX1!1.21!20.75!PRRX1;;chr11:47400062..47400077,-!p2@SPI1!1.20!14.73!SPI1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.16!116.94!PPP1R13L;;chr16:54964740..54964789,+!p1@IRX5!1.16!19.42!IRX5;;chr20:590944..590960,-!p1@TCF15!1.16!13.39!TCF15;;chr1:170633058..170633084,+!p5@PRRX1!1.14!12.94!PRRX1;;chr12:10875831..10876025,-!p1@CSDA!1.13!1018.33!CSDA;;chr12:52445218..52445237,+!p1@NR4A1!1.13!156.67!NR4A1;;chr8:106330656..106330684,+!p1@ZFPM2!1.13!33.03!ZFPM2;;chr17:6926362..6926377,+!p1@BCL6B!1.13!12.50!BCL6B;;chr17:53342311..53342400,+!p1@HLF!1.12!13.84!HLF;;chr18:53068911..53068935,-!p4@TCF4!1.12!13.61!TCF4;;chr4:57547454..57547469,-!p1@HOPX!1.12!12.05!HOPX;;chr1:61548225..61548299,+!p1@NFIA!1.11!154.21!NFIA;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.11!11.83!SEBOX;;chr11:113930291..113930339,+!p2@ZBTB16!1.10!18.97!ZBTB16;;chr1:151804244..151804310,-!p1@RORC!1.09!11.38!RORC;;chr2:242556880..242556899,-!p5@THAP4!1.09!11.38!THAP4;;chr3:126076264..126076305,-!p2@KLF15!1.08!15.62!KLF15;;chr14:105935576..105935594,+!p11@MTA1!1.07!10.71!MTA1;;chr10:111985713..111985774,+!p2@MXI1!1.06!101.54!MXI1;;chr1:8483756..8483809,-!p5@RERE!1.06!29.68!RERE;;chr1:216896752..216896778,-!p1@ESRRG!1.06!10.49!ESRRG;;chr5:71803177..71803255,-!p1@ZNF366!1.06!10.49!ZNF366;;chr1:61547894..61547968,+!p2@NFIA!1.04!29.24!NFIA;;chr1:8483723..8483752,-!p12@RERE!1.04!15.62!RERE;;chr14:73360799..73360817,-!p1@DPF3!1.03!34.15!DPF3;;chr8:80679993..80680011,-!p1@HEY1!1.03!14.28!HEY1;;chr16:54320101..54320125,-!p4@IRX3!1.03!13.84!IRX3;;chr19:22193731..22193751,-!p1@ZNF208!1.03!9.82!ZNF208;;chr11:113930401..113930422,+!p3@ZBTB16!1.03!9.82!ZBTB16;;chr1:8484926..8484950,-!p39@RERE!1.01!9.15!RERE;;chr6:126070748..126070768,+!p2@HEY2!1.01!9.15!HEY2;;chr2:19558373..19558392,-!p1@OSR1!0.99!24.33!OSR1;;chr5:88178983..88179012,-!p1@MEF2C!0.98!67.40!MEF2C;;chr5:153857800..153857812,-!p2@HAND1!0.97!8.26!HAND1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.97!8.26!PEG3;;chr1:8483878..8483907,-!p4@RERE!0.96!32.14!RERE;;chr15:31658288..31658338,+!p4@KLF13!0.96!8.03!KLF13;;chr16:54964899..54964914,+!p2@IRX5!0.96!8.03!IRX5;;chr12:114843607..114843621,-!p7@TBX5!0.95!7.81!TBX5;;chr8:48650715..48650735,-!p1@CEBPD!0.94!1027.70!CEBPD;;chr11:64073022..64073056,+!p1@ESRRA!0.94!95.96!ESRRA;;chr3:18466787..18466839,-!p1@SATB1!0.94!35.48!SATB1;;chrX:70315688..70315709,+!p1@FOXO4!0.93!17.85!FOXO4;;chr16:54319010..54319041,-!p8@IRX3!0.93!7.59!IRX3;;chr1:170632285..170632309,+!p1@PRRX1!0.91!8.03!PRRX1;;chr7:15726243..15726293,-!p2@MEOX2!0.91!7.14!MEOX2;;chr9:102584159..102584174,+!p2@NR4A3!0.90!12.72!NR4A3;;chr3:169381420..169381535,-!p1@MECOM!0.90!8.26!MECOM;;chr2:68592406..68592424,+!p1@PLEK!0.90!6.92!PLEK;;chr15:37392094..37392116,-!p6@MEIS2!0.89!8.48!MEIS2;;chr5:172662230..172662241,-!p3@NKX2-5!0.89!6.70!NKX2-5;;chr2:70142232..70142251,+!p1@MXD1!0.88!38.83!MXD1;;chr8:106330696..106330719,+!p2@ZFPM2!0.88!8.48!ZFPM2;;chr2:242556900..242556916,-!p6@THAP4!0.87!6.47!THAP4;;chr13:45010939..45011033,-!p1@TSC22D1!0.86!438.98!TSC22D1;;chrX:106960285..106960299,-!p1@TSC22D3!0.86!179.65!TSC22D3;;chrX:24167548..24167617,+!p2@ZFX!0.86!19.64!ZFX;;chr1:170633262..170633285,+!p3@PRRX1!0.86!7.14!PRRX1;;chr1:2985760..2985774,+!p1@PRDM16!0.86!6.25!PRDM16;;chr2:46524537..46524553,+!p1@EPAS1!0.85!643.63!EPAS1;;chr19:16435625..16435682,+!p1@KLF2!0.85!210.90!KLF2;;chr9:14314131..14314147,-!p2@NFIB!0.85!36.38!NFIB;;chr7:14029283..14029311,-!p1@ETV1!0.85!34.81!ETV1;;chr5:158526917..158526932,-!p1@EBF1!0.85!16.07!EBF1;;chr18:19749517..19749531,+!p3@GATA6!0.85!11.16!GATA6;;chr12:114843562..114843576,-!p8@TBX5!0.85!6.03!TBX5;;chr3:114343768..114343822,-!p1@ZBTB20!0.83!26.78!ZBTB20;;chr1:61924375..61924380,+!p6@NFIA!0.83!8.26!NFIA;;chr1:8484953..8484970,-!p43@RERE!0.83!5.80!RERE;;chr4:149363494..149363543,-!p1@NR3C2!0.83!5.80!NR3C2;;chr18:19749353..19749367,+!p4@GATA6!0.83!5.80!GATA6;;chr7:150945865..150945896,-!p4@SMARCD3!0.83!5.80!SMARCD3;;chr9:102584262..102584276,+!p1@NR4A3!0.82!13.17!NR4A3;;chr7:15726296..15726315,-!p1@MEOX2!0.82!5.58!MEOX2;;chr16:85932760..85932775,+!p1@IRF8!0.82!5.58!IRF8;;chr17:46126136..46126152,+!p1@NFE2L1!0.81!301.06!NFE2L1;;chr1:8484314..8484348,-!p7@RERE!0.81!15.85!RERE;;chr18:52989031..52989079,-!p2@TCF4!0.81!13.39!TCF4;;chr15:42783305..42783348,-!p1@ZFP106!0.80!91.28!ZFP106;;chr17:41739283..41739297,-!p1@MEOX1!0.80!5.36!MEOX1;;chr17:46128217..46128243,+!p11@NFE2L1!0.80!5.36!NFE2L1;;chr2:145275162..145275202,-!p2@ZEB2!0.79!32.81!ZEB2;;chr10:35484053..35484076,+!p1@CREM!0.79!13.84!CREM;;chr16:54320646..54320672,-!p2@IRX3!0.79!8.26!IRX3;;chr3:141121847..141121868,+!p5@ZBTB38!0.79!8.26!ZBTB38;;chr19:57183114..57183145,-!p1@ZNF835!0.79!5.80!ZNF835;;chr22:38380543..38380569,-!p1@SOX10!0.79!5.13!SOX10;;chr10:131762504..131762555,-!p1@EBF3!0.79!5.13!EBF3;;chr19:53636125..53636178,-!p1@ZNF415!0.78!15.40!ZNF415;;chr9:14083467..14083483,-!p4@NFIB!0.78!13.17!NFIB;;chr9:102584241..102584261,+!p4@NR4A3!0.78!8.03!NR4A3;;chr5:158526459..158526481,-!p2@EBF1!0.78!6.92!EBF1;;chr20:51588873..51588953,+!p1@TSHZ2!0.78!6.92!TSHZ2;;chr2:238536207..238536290,+!p2@LRRFIP1!0.77!52.00!LRRFIP1;;chr19:3359257..3359362,+!p3@NFIC!0.77!15.85!NFIC;;chr3:25469724..25469773,+!p1@RARB!0.77!7.36!RARB;;chr8:80680024..80680046,-!p2@HEY1!0.77!5.58!HEY1;;chr7:73038839..73038862,-!p1@MLXIPL!0.77!4.91!MLXIPL;;chr2:145277882..145277967,-!p3@ZEB2!0.76!8.70!ZEB2;;chr8:71316428..71316459,-!p2@NCOA2!0.76!8.48!NCOA2;;chr9:14314566..14314618,-!p1@NFIB!0.75!61.15!NFIB;;chr3:24536253..24536328,-!p1@THRB!0.75!9.37!THRB;;chr12:54694758..54694805,-!p1@NFE2!0.75!5.80!NFE2;;chr12:114843628..114843639,-!p9@TBX5!0.75!4.69!TBX5;;chr7:44143925..44143970,+!p1@AEBP1!0.74!111.14!AEBP1;;chr10:63809013..63809041,+!p3@ARID5B!0.74!27.90!ARID5B;;chr5:88179017..88179046,-!p2@MEF2C!0.74!19.64!MEF2C;;chr16:79634624..79634642,-!p1@MAF!0.74!19.64!MAF;;chr12:26277956..26277980,-!p1@BHLHE41!0.74!17.85!BHLHE41;;chr1:170633100..170633112,+!p19@PRRX1!0.74!4.46!PRRX1;;chr17:38219209..38219230,+!p1@THRA!0.73!64.05!THRA;;chr17:40540484..40540537,-!p2@STAT3!0.73!46.64!STAT3;;chr2:60780607..60780624,-!p2@BCL11A!0.73!14.73!BCL11A;;chrX:107019163..107019179,-!p7@TSC22D3!0.73!5.13!TSC22D3;;chr9:73028814..73028895,-!p1@KLF9!0.72!47.09!KLF9;;chr2:60780753..60780800,-!p1@BCL11A!0.72!23.43!BCL11A;;chr1:170632959..170632987,+!p4@PRRX1!0.72!4.69!PRRX1;;chr1:216896780..216896800,-!p2@ESRRG!0.72!4.24!ESRRG;;chrX:131545395..131545413,-!p16@MBNL3!0.72!4.24!MBNL3;;chr12:114845810..114845824,-!p1@TBX5!0.72!4.24!TBX5;;chr3:21792682..21792720,-!p1@ZNF385D!0.72!4.24!ZNF385D;;chr4:26165074..26165110,+!p9@RBPJ!0.72!4.24!RBPJ;;chr8:93115274..93115323,-!p4@RUNX1T1!0.72!4.24!RUNX1T1;;chr2:97202480..97202499,+!p1@ARID5A!0.71!47.54!ARID5A;;chr4:87856191..87856208,+!p2@AFF1!0.71!36.60!AFF1;;chr2:46524897..46524911,+!p2@EPAS1!0.71!12.72!EPAS1;;chr1:61548374..61548415,+!p4@NFIA!0.71!8.26!NFIA;;chr15:100106670..100106697,+!p4@MEF2A!0.71!7.14!MEF2A;;chrX:66763856..66763896,+!p1@AR!0.70!6.03!AR;;chr17:41738684..41738704,-!p2@MEOX1!0.70!4.02!MEOX1;;chr1:10856665..10856683,-!p4@CASZ1!0.70!4.02!CASZ1;;chr5:153857819..153857824,-!p3@HAND1!0.70!4.02!HAND1;;chr11:113930477..113930488,+!p4@ZBTB16!0.70!4.02!ZBTB16;;chr17:40540377..40540481,-!p1@STAT3!0.69!225.63!STAT3;;chr1:164528410..164528428,+!p1@PBX1!0.69!33.25!PBX1;;chr20:62462566..62462631,-!p1@ZBTB46!0.69!8.03!ZBTB46;;chr9:102584128..102584144,+!p3@NR4A3!0.69!8.03!NR4A3;;chr6:85474299..85474324,-!p1@TBX18!0.69!7.59!TBX18;;chr9:14082760..14082775,-!p6@NFIB!0.68!6.70!NFIB;;chr9:14083091..14083096,-!p12@NFIB!0.68!3.79!NFIB;;chr7:63505799..63505904,+!p1@ZNF727!0.68!3.79!ZNF727;;chr12:114843816..114843832,-!p4@TBX5!0.68!3.79!TBX5;;chr1:10856639..10856662,-!p2@CASZ1!0.68!3.79!CASZ1;;chr1:10856694..10856715,-!p3@CASZ1!0.68!3.79!CASZ1;;chr1:209975494..209975503,-!p7@IRF6!0.68!3.79!IRF6;;chr1:214161328..214161348,+!p2@PROX1!0.68!3.79!PROX1;;chr16:54320280..54320291,-!p9@IRX3!0.68!3.79!IRX3;;chr18:53177984..53178004,-!p17@TCF4!0.68!3.79!TCF4;;chr2:85980951..85981004,+!p1@ATOH8!0.67!6.47!ATOH8;;chr1:221052840..221052875,+!p4@HLX!0.67!4.4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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 39: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/heart%252c%2520adult%252c%2520pool1.CNhs10621.10016-101C7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/heart%252c%2520adult%252c%2520pool1.CNhs10621.10016-101C7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/heart%252c%2520adult%252c%2520pool1.CNhs10621.10016-101C7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/heart%252c%2520adult%252c%2520pool1.CNhs10621.10016-101C7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/heart%252c%2520adult%252c%2520pool1.CNhs10621.10016-101C7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10016-101C7
 |is_a=EFO:0002091;;FF:0010016
 |is_obsolete=
 |library_id=CNhs10621
+|library_id_phase_based=2:CNhs10621
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10016
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10016
 |name=heart, adult, pool1
 |namespace=FANTOM5
@@ Line 48: / Line 61: @@
 |profile_cagescan=NCig10015,,,
 |profile_hcage=CNhs10621,LSID656,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10016-101C7;search_select_hide=table117:FF:10016-101C7
 }}

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FF:10016-101C7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:14, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0