FF:10057-101H3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00004990 | ||
|accession_numbers=CAGE;DRX008755;DRR009627;DRZ001052;DRZ002437;DRZ012402;DRZ013787 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002331,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0000478,UBERON:0010317 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010057 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/umbilical%2520cord%252c%2520fetal%252c%2520donor1.CNhs11765.10057-101H3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/umbilical%2520cord%252c%2520fetal%252c%2520donor1.CNhs11765.10057-101H3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/umbilical%2520cord%252c%2520fetal%252c%2520donor1.CNhs11765.10057-101H3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/umbilical%2520cord%252c%2520fetal%252c%2520donor1.CNhs11765.10057-101H3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/umbilical%2520cord%252c%2520fetal%252c%2520donor1.CNhs11765.10057-101H3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10057-101H3 | |id=FF:10057-101H3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010057 | ||
|is_obsolete= | |||
|library_id=CNhs11765 | |||
|library_id_phase_based=2:CNhs11765 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10057 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10057 | |||
|name=umbilical cord, fetal, donor1 | |name=umbilical cord, fetal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11765,LSID820,release009,COMPLETED | |profile_hcage=CNhs11765,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.27483329820609,0.431748925799174,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602004353941654,0,0,0,0,0,0.657369468022025,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.34982407948288,0.476356999379311,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0785085424223245,0.524579074618365,-0.0969923612426051,0,0,0.427235447405268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257147756972082,0.262289537309182,0,0,0.0271410517961841,-0.211197402695869,0,0,0,0,-0.0980353512377064,0.239186481344146,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.0742802680084763,0.456226749412846,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0.524579074618365,0,0,0,0,0,0.2774001993328,0,0.0504928558663564,-0.143515142523472,0,0,0.0972999877087945,0,0.524579074618365,0,0,0,0.755327364290082,0.524579074618365,0,0,0.3964592076658,0,0.704914812700767,0,0,0,0,0,-0.305472230898407,0,-0.17425806114951,0.686983103212714,0,0,0,0,0.254338405284041,0,-0.120879483793741,-0.0827201683234173,0.513128264877633,0.185361946471537,-0.04680465889238,0,0,0,0.337226285546601,-0.263051549102806,0,0,0.255883830393167,0.785492507937469,0,0,1.10731177772144,0,-0.146044719327645,0.0452469300091237,0,0,0,0,0,0,0.524579074618365,0,0,0.524579074618365,0,0,0,0.657403250754187,0.428338767611113,0,0,0,0,-0.234095570420986,0,0.113029400880135,0.86788329024092,0.173843061321506,0,-0.018980820113916,0,0.222189347608452,0.118910508736211,0.488096508239665,0.0271410517961841,-0.147401849371139,0.334597355068518,0,0.257147756972082,-0.0309452648239297,0.103251674048117,-0.250906627130461,0.155511900948614,0.233333034005164,0.00713163814632867,0,0,0,0.339754449999717,0,0.0366338138135964,0.265212649813308,0.0941425614102115,0.208142264629944,0.292849724991132,0.00122090131134444,-0.125181535824232,0.33813115368837,0.558996715226446,0,0.751461516813617,0.138028587684437,1.01643316812304,0.0504652787704891,0.0835719418912395,0.455257339090165,-0.615826173178679,0,0.421236898721903,-0.0683442610773682,0,0.11533981106389,0.114287338359329,0,0,0.17655013341867,0,0,-0.130814304022209,0,0,-0.308645357582296,0.56540609420698,0.29172351306282,0,-0.00459391813185283,0,0.155321099913856,0,-0.0886173091080439,0.322408313007559,0.195838792509553,-0.117198682932137,0,-0.0112135899412686,-0.172082794329748,-0.0194287946643712,-0.422394805391737,-0.0584468268118252,0.0248554305143509,0.308052516372715,-0.235644989195696,-0.264360790171862,0.323714979105996,-0.0881268324752877,0,0.412489934878363,0.22571622891136,0.0856184314861326,0.0564233152246518,0,0.165790729141864,0.755327364290082,0.0992694727449741,0.234478755709261,-0.124638766376789,0.364780609059644,0.465924985952198,-0.382715077940336,0,0.333767210614119,1.34138280768859,0,-0.133115679643447,0,0,-0.150367083334639,0.543473479684905,0.0506391094445935,-0.138989456679195,0,0.31481807884749,0,0,-0.0779388174270645,-0.235476037764389,0,0.400808361257659,-0.0846238395950314,-0.0796369665769298,-0.115971073434934,0,0,0.940240115320938,0,0,0.498970173419116,0,0.67625136143811,0.502001022803326,-0.068880510830364,0.531330409999968,0,0,-0.177527765965176,0,0.0818915347818045,0,0,-0.249881296598824,-0.116628112990133,0,0.377663682145041,0,0,0,0,0,0,0.151460672082179,0,0.0232687774392241,0.363826323300418,-0.354833330216448,0,-0.193057134165027,0,0,0,0,0,0,0.269402065213699,0,0.351248493190145,-0.040934989593315,-0.12301741567642,0,0,0,0,-0.215723402553475,0.321342512523641,0,0.392716368120733,0,0,0,0,-0.0861409897892114,0,0,0,0,0.466848617564701,-0.145420110311909,0,0,0,0.478372962688292,0,0,0,0,-0.0575724465483949,0,0,0.0155453494510991,0,0.0328027393806338,-0.0815818795468414,0,0.361120022749404,-0.0584179192728094,0.0789088004079759,0,0,0.263231942828477,0,0,-0.511365247014883,0,0,0,0,0,0,0,0,0,0.541012851890326,0,0,0,0,0,0.524579074618365,0,0,0,0,0,-0.172973609254353,0.432355017959854,0,0,0,0,0,0,0,0.238183514230279,-0.08704053039183,0,0,0,0,0,0,0,0,0.545007228459799,0,0,0,0,0,-0.0969923612426051,0,0,0,0,0.863497851598348,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.130957334947435,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,-0.113884373708977,0,0,0,0.911636783333885,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204326881679282,0,0,-0.0405930616670258,0,0,0.319820765985531,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.061367927484915,0,0,0,0,0,0,0,0.657369468022025,0,0,-0.0920328098005262,0,0,0,0,0,0,0.164630339609733,0.241358674795217,0.163912308395411,0,0,0.905214360532884,-0.054385572482455,0,0,0.100791567329171,0.524579074618365,0.457801687199464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.524579074618365,0,0,0,0,0,0,0,0,0,0.602004353941654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0.524579074618365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.936414699854403,0,0,0,-0.213086229657044,0,0,0,0,0,0,0.755327364290082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.524579074618365,0,0,0,0.349898497339687,0,0,0,0,0,0,0,0,0,0,0.0147515379482789,0,0,0.476356999379311,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20482332177437,0,0,0,0,0.476941963957446,0,0,0,0,0,0,0,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501716756001577,0,0,0.567851787483607,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136791420136229,0.456226749412846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262289537309182,0,0,0,0,0,0,0,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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:RtHFN: Umbilical cor | |rna_catalog_number=Cat:RtHFN: Umbilical cor | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=A? | |sample_ethnicity=A? | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.24938088034506e-238!GO:0005737;cytoplasm;6.99755277611723e-195!GO:0044444;cytoplasmic part;9.11586745210381e-130!GO:0043226;organelle;6.56966241889374e-125!GO:0043229;intracellular organelle;1.09994820983142e-124!GO:0044422;organelle part;6.63977262546244e-102!GO:0044446;intracellular organelle part;2.04066486419296e-100!GO:0005515;protein binding;7.95552636010475e-99!GO:0043231;intracellular membrane-bound organelle;1.2576118175722e-96!GO:0043227;membrane-bound organelle;1.26785970016668e-96!GO:0032991;macromolecular complex;1.24741225352181e-70!GO:0005739;mitochondrion;3.00650310239355e-49!GO:0030529;ribonucleoprotein complex;1.21338830647201e-47!GO:0044238;primary metabolic process;6.55514300049415e-43!GO:0019538;protein metabolic process;6.5932750494421e-43!GO:0016043;cellular component organization and biogenesis;1.70582844583294e-42!GO:0043233;organelle lumen;1.10270569734549e-41!GO:0031974;membrane-enclosed lumen;1.10270569734549e-41!GO:0044237;cellular metabolic process;6.18422563088032e-41!GO:0043234;protein complex;1.70194915450706e-40!GO:0031090;organelle membrane;3.62690033423205e-40!GO:0003723;RNA binding;6.99601249916465e-39!GO:0044260;cellular macromolecule metabolic process;4.52026083855527e-37!GO:0044429;mitochondrial part;8.41539166045283e-37!GO:0043228;non-membrane-bound organelle;1.6303119744023e-36!GO:0043232;intracellular non-membrane-bound organelle;1.6303119744023e-36!GO:0043170;macromolecule metabolic process;2.24969884708192e-36!GO:0044267;cellular protein metabolic process;2.81191825904821e-35!GO:0031967;organelle envelope;1.10456246341771e-32!GO:0031975;envelope;1.4863828615851e-32!GO:0005840;ribosome;2.54982310427871e-32!GO:0044428;nuclear part;4.58730752299603e-32!GO:0005829;cytosol;2.6767182383759e-30!GO:0006412;translation;4.88948262546151e-30!GO:0015031;protein transport;1.04428905644409e-29!GO:0033036;macromolecule localization;1.08351249132085e-29!GO:0008104;protein localization;4.56087669645924e-28!GO:0045184;establishment of protein localization;6.14710354657186e-28!GO:0009058;biosynthetic process;7.51392210471363e-28!GO:0003735;structural constituent of ribosome;8.69599188172343e-28!GO:0046907;intracellular transport;9.94739561726731e-27!GO:0033279;ribosomal subunit;8.177762773655e-26!GO:0009059;macromolecule biosynthetic process;1.55571551750766e-25!GO:0005740;mitochondrial envelope;7.3096831765008e-25!GO:0044249;cellular biosynthetic process;1.21705895752857e-24!GO:0031966;mitochondrial membrane;1.6267044080747e-24!GO:0065003;macromolecular complex assembly;6.35105702871525e-24!GO:0022607;cellular component assembly;9.68318787352323e-24!GO:0019866;organelle inner membrane;2.3472520397995e-23!GO:0016071;mRNA metabolic process;4.82847573137487e-23!GO:0005743;mitochondrial inner membrane;5.36477373163961e-22!GO:0006886;intracellular protein transport;9.16758065484788e-22!GO:0005783;endoplasmic reticulum;3.66463527618385e-21!GO:0006119;oxidative phosphorylation;9.94019541024922e-21!GO:0008380;RNA splicing;1.08999631957939e-20!GO:0005634;nucleus;2.57268455330758e-20!GO:0008092;cytoskeletal protein binding;9.84720321911692e-20!GO:0006396;RNA processing;1.26577147192183e-19!GO:0006397;mRNA processing;2.12748412211942e-19!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.92392773644936e-19!GO:0048770;pigment granule;8.31655888321639e-19!GO:0042470;melanosome;8.31655888321639e-19!GO:0044455;mitochondrial membrane part;1.81109949679615e-18!GO:0006996;organelle organization and biogenesis;2.48803228061672e-18!GO:0031981;nuclear lumen;3.31621868339358e-18!GO:0044445;cytosolic part;1.08323820384786e-17!GO:0005746;mitochondrial respiratory chain;2.03548150028254e-17!GO:0051641;cellular localization;2.15065156180685e-17!GO:0051649;establishment of cellular localization;7.26863126738398e-17!GO:0012505;endomembrane system;1.32957501381091e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.48769033534241e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.03283378149821e-15!GO:0003954;NADH dehydrogenase activity;1.03283378149821e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.03283378149821e-15!GO:0031980;mitochondrial lumen;1.58679676420127e-15!GO:0005759;mitochondrial matrix;1.58679676420127e-15!GO:0008134;transcription factor binding;2.62636545162087e-15!GO:0015629;actin cytoskeleton;4.40092828395077e-15!GO:0006457;protein folding;1.78404673287397e-14!GO:0005681;spliceosome;1.96017858484508e-14!GO:0005794;Golgi apparatus;3.81338119075063e-14!GO:0044432;endoplasmic reticulum part;7.59139481020121e-14!GO:0015935;small ribosomal subunit;1.21663240099494e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.52325301144057e-13!GO:0045271;respiratory chain complex I;1.52325301144057e-13!GO:0005747;mitochondrial respiratory chain complex I;1.52325301144057e-13!GO:0005856;cytoskeleton;2.22647361010512e-13!GO:0016192;vesicle-mediated transport;3.55400990735427e-13!GO:0003779;actin binding;3.55400990735427e-13!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.90857041300225e-13!GO:0015934;large ribosomal subunit;4.27998235241412e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.50272596098242e-13!GO:0022618;protein-RNA complex assembly;4.86478859234415e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.7519859510806e-13!GO:0042775;organelle ATP synthesis coupled electron transport;9.62674174986513e-13!GO:0042773;ATP synthesis coupled electron transport;9.62674174986513e-13!GO:0048523;negative regulation of cellular process;9.62674174986513e-13!GO:0048193;Golgi vesicle transport;1.50107553859682e-12!GO:0016462;pyrophosphatase activity;1.86860030767165e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.09717983587049e-12!GO:0008135;translation factor activity, nucleic acid binding;2.6331727212765e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;2.6331727212765e-12!GO:0017111;nucleoside-triphosphatase activity;4.71788020274946e-12!GO:0048519;negative regulation of biological process;6.99839929832704e-12!GO:0044265;cellular macromolecule catabolic process;7.0012230303124e-12!GO:0005654;nucleoplasm;1.52532969387071e-11!GO:0044449;contractile fiber part;1.71824371136703e-11!GO:0051186;cofactor metabolic process;2.75746209294853e-11!GO:0043292;contractile fiber;2.98161634015931e-11!GO:0030029;actin filament-based process;3.1679536346594e-11!GO:0006605;protein targeting;4.38997174033496e-11!GO:0000166;nucleotide binding;4.90124531866054e-11!GO:0044257;cellular protein catabolic process;7.92336470554898e-11!GO:0006461;protein complex assembly;9.24113609239358e-11!GO:0005788;endoplasmic reticulum lumen;9.89766094266875e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;1.02117384625179e-10!GO:0019941;modification-dependent protein catabolic process;1.82816426318116e-10!GO:0043632;modification-dependent macromolecule catabolic process;1.82816426318116e-10!GO:0000502;proteasome complex (sensu Eukaryota);1.96646899458523e-10!GO:0006511;ubiquitin-dependent protein catabolic process;2.12498883620587e-10!GO:0030036;actin cytoskeleton organization and biogenesis;2.95134059474322e-10!GO:0008307;structural constituent of muscle;3.2491498358645e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.33516822857158e-10!GO:0051082;unfolded protein binding;4.25421454005879e-10!GO:0009057;macromolecule catabolic process;4.68960900989934e-10!GO:0030016;myofibril;8.30403232229448e-10!GO:0006512;ubiquitin cycle;9.28026708719164e-10!GO:0043285;biopolymer catabolic process;1.06818579224131e-09!GO:0044248;cellular catabolic process;1.21894037162896e-09!GO:0043283;biopolymer metabolic process;1.22625637966547e-09!GO:0044451;nucleoplasm part;1.28388315254416e-09!GO:0016874;ligase activity;1.40258615459886e-09!GO:0012501;programmed cell death;1.47483897031047e-09!GO:0030163;protein catabolic process;1.66378699570097e-09!GO:0009055;electron carrier activity;2.32589854492206e-09!GO:0008565;protein transporter activity;2.79240597698514e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.08672075851528e-09!GO:0005761;mitochondrial ribosome;3.08672075851528e-09!GO:0000313;organellar ribosome;3.08672075851528e-09!GO:0006915;apoptosis;3.16644896789162e-09!GO:0010467;gene expression;4.14819378464668e-09!GO:0006446;regulation of translational initiation;4.55858053419691e-09!GO:0005793;ER-Golgi intermediate compartment;4.70180145706041e-09!GO:0007010;cytoskeleton organization and biogenesis;4.7698532617242e-09!GO:0007517;muscle development;4.7698532617242e-09!GO:0031988;membrane-bound vesicle;5.93008866102867e-09!GO:0044420;extracellular matrix part;6.20462918153667e-09!GO:0008219;cell death;6.71992513568648e-09!GO:0016265;death;6.71992513568648e-09!GO:0006413;translational initiation;8.45019510347216e-09!GO:0031982;vesicle;8.45019510347216e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.62176787854548e-09!GO:0006732;coenzyme metabolic process;8.64364348704292e-09!GO:0003743;translation initiation factor activity;8.70380057797341e-09!GO:0005635;nuclear envelope;9.08037357348323e-09!GO:0016023;cytoplasmic membrane-bound vesicle;9.98635599664196e-09!GO:0003712;transcription cofactor activity;1.05778012058056e-08!GO:0008361;regulation of cell size;1.44400761898237e-08!GO:0031410;cytoplasmic vesicle;1.50366874912152e-08!GO:0016049;cell growth;1.53060388074992e-08!GO:0030017;sarcomere;2.38023014468492e-08!GO:0005581;collagen;3.83254582952932e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.20714620565907e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.08215233107287e-08!GO:0016564;transcription repressor activity;1.00247797061352e-07!GO:0005789;endoplasmic reticulum membrane;1.00490433248167e-07!GO:0006366;transcription from RNA polymerase II promoter;1.03268449580903e-07!GO:0009060;aerobic respiration;1.25417633817208e-07!GO:0019829;cation-transporting ATPase activity;1.3430861485884e-07!GO:0031965;nuclear membrane;1.42680010658988e-07!GO:0006913;nucleocytoplasmic transport;1.49274276747861e-07!GO:0043412;biopolymer modification;1.58506802342714e-07!GO:0045333;cellular respiration;1.75226228010669e-07!GO:0032553;ribonucleotide binding;2.42084787886937e-07!GO:0032555;purine ribonucleotide binding;2.42084787886937e-07!GO:0051169;nuclear transport;2.47914830527901e-07!GO:0006464;protein modification process;2.80106715059282e-07!GO:0015986;ATP synthesis coupled proton transport;3.17482796651973e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.17482796651973e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.23680861290144e-07!GO:0017038;protein import;3.23680861290144e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;3.23680861290144e-07!GO:0000375;RNA splicing, via transesterification reactions;3.23680861290144e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.23680861290144e-07!GO:0006163;purine nucleotide metabolic process;3.62776230993825e-07!GO:0001558;regulation of cell growth;4.24061555247956e-07!GO:0017076;purine nucleotide binding;4.60663436940662e-07!GO:0015980;energy derivation by oxidation of organic compounds;4.61673735374173e-07!GO:0006099;tricarboxylic acid cycle;4.89366687933122e-07!GO:0046356;acetyl-CoA catabolic process;4.89366687933122e-07!GO:0009199;ribonucleoside triphosphate metabolic process;5.10255580354868e-07!GO:0009150;purine ribonucleotide metabolic process;5.15723325483532e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.34336115245508e-07!GO:0051246;regulation of protein metabolic process;5.50508604583982e-07!GO:0005730;nucleolus;6.37016881618003e-07!GO:0006084;acetyl-CoA metabolic process;6.98794525616807e-07!GO:0016887;ATPase activity;7.14398570802259e-07!GO:0046034;ATP metabolic process;7.80184788088756e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.92015979062968e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.92015979062968e-07!GO:0009056;catabolic process;1.00376227396071e-06!GO:0009141;nucleoside triphosphate metabolic process;1.08459049695368e-06!GO:0006091;generation of precursor metabolites and energy;1.23388621212065e-06!GO:0043687;post-translational protein modification;1.39680987554063e-06!GO:0009259;ribonucleotide metabolic process;1.49154754070639e-06!GO:0051187;cofactor catabolic process;2.37140508414204e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.59469774711912e-06!GO:0009109;coenzyme catabolic process;2.61466887962286e-06!GO:0030120;vesicle coat;2.61466887962286e-06!GO:0030662;coated vesicle membrane;2.61466887962286e-06!GO:0003714;transcription corepressor activity;3.04984546938716e-06!GO:0043069;negative regulation of programmed cell death;3.30301966700656e-06!GO:0042802;identical protein binding;3.31746002593596e-06!GO:0007049;cell cycle;4.83021364280361e-06!GO:0009142;nucleoside triphosphate biosynthetic process;4.83021364280361e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.83021364280361e-06!GO:0031252;leading edge;4.93771509583427e-06!GO:0042623;ATPase activity, coupled;4.93771509583427e-06!GO:0043066;negative regulation of apoptosis;5.04350947205652e-06!GO:0004842;ubiquitin-protein ligase activity;6.5359100593008e-06!GO:0006754;ATP biosynthetic process;6.70788256426143e-06!GO:0006753;nucleoside phosphate metabolic process;6.70788256426143e-06!GO:0048475;coated membrane;6.9381144376654e-06!GO:0030117;membrane coat;6.9381144376654e-06!GO:0005768;endosome;7.33774005171877e-06!GO:0003924;GTPase activity;7.3454954502851e-06!GO:0031324;negative regulation of cellular metabolic process;7.36979730578932e-06!GO:0006164;purine nucleotide biosynthetic process;7.39299083774088e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.39299083774088e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.39299083774088e-06!GO:0008639;small protein conjugating enzyme activity;7.49716097790636e-06!GO:0044431;Golgi apparatus part;8.00770084425343e-06!GO:0045259;proton-transporting ATP synthase complex;8.57180140643013e-06!GO:0005773;vacuole;9.4143799159781e-06!GO:0006606;protein import into nucleus;1.00706175698614e-05!GO:0009152;purine ribonucleotide biosynthetic process;1.10180929816725e-05!GO:0005583;fibrillar collagen;1.17694825760629e-05!GO:0016491;oxidoreductase activity;1.18204361186661e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.52179134446204e-05!GO:0009892;negative regulation of metabolic process;1.52732694579284e-05!GO:0051170;nuclear import;1.66210206883004e-05!GO:0006916;anti-apoptosis;1.6626724906818e-05!GO:0051789;response to protein stimulus;2.13318971328535e-05!GO:0006986;response to unfolded protein;2.13318971328535e-05!GO:0019787;small conjugating protein ligase activity;2.18714020930307e-05!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.21027769541963e-05!GO:0006259;DNA metabolic process;2.62773974657449e-05!GO:0044453;nuclear membrane part;2.68757787270138e-05!GO:0016604;nuclear body;2.76512314579874e-05!GO:0005798;Golgi-associated vesicle;2.76512314579874e-05!GO:0016044;membrane organization and biogenesis;2.91143507288123e-05!GO:0044262;cellular carbohydrate metabolic process;2.9886266861259e-05!GO:0005865;striated muscle thin filament;3.60246208907791e-05!GO:0042981;regulation of apoptosis;3.6975872430167e-05!GO:0009260;ribonucleotide biosynthetic process;3.75833939641106e-05!GO:0006793;phosphorus metabolic process;3.92109690235055e-05!GO:0006796;phosphate metabolic process;3.92109690235055e-05!GO:0043067;regulation of programmed cell death;4.64452859741114e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.76513787864003e-05!GO:0016607;nuclear speck;5.23546153676244e-05!GO:0005201;extracellular matrix structural constituent;6.2302070222638e-05!GO:0005741;mitochondrial outer membrane;6.29411340955456e-05!GO:0019867;outer membrane;6.44683901188378e-05!GO:0051128;regulation of cellular component organization and biogenesis;6.5468168825987e-05!GO:0016481;negative regulation of transcription;6.94055823720824e-05!GO:0040008;regulation of growth;7.00932783405916e-05!GO:0031968;organelle outer membrane;7.21492787760281e-05!GO:0005525;GTP binding;7.28744889436295e-05!GO:0030532;small nuclear ribonucleoprotein complex;8.85721853089273e-05!GO:0000323;lytic vacuole;9.03840390053132e-05!GO:0005764;lysosome;9.03840390053132e-05!GO:0032559;adenyl ribonucleotide binding;9.22613151534866e-05!GO:0006950;response to stress;9.83302043045767e-05!GO:0005912;adherens junction;9.94515704871493e-05!GO:0005524;ATP binding;0.000104346064395644!GO:0016879;ligase activity, forming carbon-nitrogen bonds;0.000108320873750744!GO:0006613;cotranslational protein targeting to membrane;0.000110777424038233!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000112810758619197!GO:0006979;response to oxidative stress;0.000118150281261558!GO:0045786;negative regulation of progression through cell cycle;0.000125918233840928!GO:0019899;enzyme binding;0.000137789279505294!GO:0022890;inorganic cation transmembrane transporter activity;0.000141179965103824!GO:0051188;cofactor biosynthetic process;0.000175373169523101!GO:0030554;adenyl nucleotide binding;0.000175373169523101!GO:0048471;perinuclear region of cytoplasm;0.000187205483470781!GO:0000139;Golgi membrane;0.000197204056937149!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000208493855857361!GO:0016310;phosphorylation;0.000216813989427786!GO:0030133;transport vesicle;0.00025211697070791!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000252267146894057!GO:0031589;cell-substrate adhesion;0.000257962279315253!GO:0030308;negative regulation of cell growth;0.000268589802085008!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000271556260690182!GO:0000245;spliceosome assembly;0.000274360924628314!GO:0045792;negative regulation of cell size;0.000292723963748723!GO:0051427;hormone receptor binding;0.000325911474852614!GO:0016853;isomerase activity;0.000331026801878535!GO:0005578;proteinaceous extracellular matrix;0.000336353621277391!GO:0005762;mitochondrial large ribosomal subunit;0.000356354638069783!GO:0000315;organellar large ribosomal subunit;0.000356354638069783!GO:0005839;proteasome core complex (sensu Eukaryota);0.000369766352958356!GO:0030867;rough endoplasmic reticulum membrane;0.000415567026310985!GO:0001666;response to hypoxia;0.000431255380547784!GO:0005643;nuclear pore;0.000437199406007405!GO:0016881;acid-amino acid ligase activity;0.000440492185421583!GO:0006752;group transfer coenzyme metabolic process;0.000449072113642794!GO:0005791;rough endoplasmic reticulum;0.000451613606544856!GO:0016859;cis-trans isomerase activity;0.000469286631029836!GO:0032561;guanyl ribonucleotide binding;0.000486797288900125!GO:0019001;guanyl nucleotide binding;0.000486797288900125!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000503026003237241!GO:0009117;nucleotide metabolic process;0.000521326068456018!GO:0008286;insulin receptor signaling pathway;0.000535365519705962!GO:0000074;regulation of progression through cell cycle;0.00054373650505084!GO:0019843;rRNA binding;0.000549463255693663!GO:0007005;mitochondrion organization and biogenesis;0.000551935039095597!GO:0005048;signal sequence binding;0.000577852346598401!GO:0031674;I band;0.000591598915353898!GO:0035257;nuclear hormone receptor binding;0.000628871156237457!GO:0001725;stress fiber;0.000632068872686514!GO:0032432;actin filament bundle;0.000632068872686514!GO:0033673;negative regulation of kinase activity;0.000688837820366211!GO:0006469;negative regulation of protein kinase activity;0.000688837820366211!GO:0016787;hydrolase activity;0.000705765793441256!GO:0065002;intracellular protein transport across a membrane;0.000715693850713802!GO:0051726;regulation of cell cycle;0.000720847678584764!GO:0014706;striated muscle development;0.000746161667569396!GO:0003012;muscle system process;0.000804162022251747!GO:0006936;muscle contraction;0.000804162022251747!GO:0007264;small GTPase mediated signal transduction;0.000809163889147085!GO:0003697;single-stranded DNA binding;0.000829373936094!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000829373936094!GO:0015399;primary active transmembrane transporter activity;0.000829373936094!GO:0050789;regulation of biological process;0.000850039593148273!GO:0016197;endosome transport;0.000857885262090053!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000857885262090053!GO:0004812;aminoacyl-tRNA ligase activity;0.000857885262090053!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000857885262090053!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000919896132284444!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000960238220764178!GO:0008654;phospholipid biosynthetic process;0.000963344109903211!GO:0004298;threonine endopeptidase activity;0.00105185790262745!GO:0043623;cellular protein complex assembly;0.00106430368211665!GO:0001944;vasculature development;0.00111160347312457!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00111160347312457!GO:0007160;cell-matrix adhesion;0.00124822488004014!GO:0009108;coenzyme biosynthetic process;0.00133714488738692!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00133714488738692!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00133714488738692!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00133714488738692!GO:0051920;peroxiredoxin activity;0.0013774345313193!GO:0048522;positive regulation of cellular process;0.0014679471631514!GO:0022402;cell cycle process;0.00149552865255445!GO:0030027;lamellipodium;0.00154036912141907!GO:0003713;transcription coactivator activity;0.00155742757704667!GO:0005770;late endosome;0.00156366921875051!GO:0000902;cell morphogenesis;0.00162277845628721!GO:0032989;cellular structure morphogenesis;0.00162277845628721!GO:0043021;ribonucleoprotein binding;0.00164547324319386!GO:0006941;striated muscle contraction;0.00166415882373055!GO:0051348;negative regulation of transferase activity;0.00166415882373055!GO:0001568;blood vessel development;0.00167422463968705!GO:0044430;cytoskeletal part;0.0016768454137647!GO:0045893;positive regulation of transcription, DNA-dependent;0.00168734100735313!GO:0043038;amino acid activation;0.0017266381856696!GO:0006418;tRNA aminoacylation for protein translation;0.0017266381856696!GO:0043039;tRNA aminoacylation;0.0017266381856696!GO:0045926;negative regulation of growth;0.0017882511752391!GO:0005913;cell-cell adherens junction;0.00179492221956515!GO:0008250;oligosaccharyl transferase complex;0.001828243791358!GO:0045892;negative regulation of transcription, DNA-dependent;0.00187962416755986!GO:0046930;pore complex;0.00191682819260313!GO:0005667;transcription factor complex;0.00198548636428238!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00205067064447454!GO:0043566;structure-specific DNA binding;0.00229699817800736!GO:0005586;collagen type III;0.00235109728339768!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00236888081299237!GO:0004576;oligosaccharyl transferase activity;0.00238529900532988!GO:0033116;ER-Golgi intermediate compartment membrane;0.00242343783299085!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00252127991770086!GO:0030663;COPI coated vesicle membrane;0.0026147107359551!GO:0030126;COPI vesicle coat;0.0026147107359551!GO:0006333;chromatin assembly or disassembly;0.00270913126332933!GO:0016563;transcription activator activity;0.00272567505381117!GO:0043284;biopolymer biosynthetic process;0.00282403424691459!GO:0043492;ATPase activity, coupled to movement of substances;0.00282403424691459!GO:0045941;positive regulation of transcription;0.00285360237882296!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00285736029908028!GO:0048518;positive regulation of biological process;0.00287074962293481!GO:0006891;intra-Golgi vesicle-mediated transport;0.00287800083288161!GO:0007167;enzyme linked receptor protein signaling pathway;0.00305671061749381!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00310372507671833!GO:0035258;steroid hormone receptor binding;0.00311004377187117!GO:0051270;regulation of cell motility;0.00312345279525293!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00313578520714555!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00317889529273175!GO:0060047;heart contraction;0.00319276077438872!GO:0003015;heart process;0.00319276077438872!GO:0022415;viral reproductive process;0.00332323252495938!GO:0005885;Arp2/3 protein complex;0.00333661366100976!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00336653398577418!GO:0033043;regulation of organelle organization and biogenesis;0.00336653398577418!GO:0008610;lipid biosynthetic process;0.00340026824150277!GO:0006897;endocytosis;0.00347179246376297!GO:0010324;membrane invagination;0.00347179246376297!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00349976135201473!GO:0051329;interphase of mitotic cell cycle;0.00361841947398321!GO:0005769;early endosome;0.00369829583371121!GO:0050657;nucleic acid transport;0.00369829583371121!GO:0051236;establishment of RNA localization;0.00369829583371121!GO:0050658;RNA transport;0.00369829583371121!GO:0030018;Z disc;0.00378065130646907!GO:0031032;actomyosin structure organization and biogenesis;0.00384137032982388!GO:0030132;clathrin coat of coated pit;0.00388122862439592!GO:0048468;cell development;0.00399656782170554!GO:0006403;RNA localization;0.00419902824162452!GO:0045454;cell redox homeostasis;0.00429161583195193!GO:0051325;interphase;0.00451875380096744!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00455173127549887!GO:0044440;endosomal part;0.00456189863589248!GO:0010008;endosome membrane;0.00456189863589248!GO:0006323;DNA packaging;0.00464672554937423!GO:0000314;organellar small ribosomal subunit;0.00467439550258813!GO:0005763;mitochondrial small ribosomal subunit;0.00467439550258813!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00471046922690048!GO:0005905;coated pit;0.00471147416706267!GO:0042692;muscle cell differentiation;0.00473666095221892!GO:0032446;protein modification by small protein conjugation;0.00473889178278054!GO:0043488;regulation of mRNA stability;0.00487354091880043!GO:0043487;regulation of RNA stability;0.00487354091880043!GO:0030934;anchoring collagen;0.00494493209840961!GO:0009719;response to endogenous stimulus;0.00495608777935629!GO:0004860;protein kinase inhibitor activity;0.00509328297893234!GO:0006818;hydrogen transport;0.00522746687214812!GO:0003746;translation elongation factor activity;0.00536310802058098!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00537530217775586!GO:0016567;protein ubiquitination;0.00537530217775586!GO:0065004;protein-DNA complex assembly;0.00549162790065546!GO:0015630;microtubule cytoskeleton;0.00555240630121998!GO:0001516;prostaglandin biosynthetic process;0.00559277428102396!GO:0046457;prostanoid biosynthetic process;0.00559277428102396!GO:0030137;COPI-coated vesicle;0.00567809605842639!GO:0051252;regulation of RNA metabolic process;0.00569021573338807!GO:0000785;chromatin;0.00571433922145628!GO:0015992;proton transport;0.00575287079691609!GO:0000151;ubiquitin ligase complex;0.00579203018241951!GO:0030100;regulation of endocytosis;0.00592607492388863!GO:0007015;actin filament organization;0.00603156650447525!GO:0017166;vinculin binding;0.00608377420542544!GO:0006334;nucleosome assembly;0.00620917541403587!GO:0001726;ruffle;0.00673176833993438!GO:0040012;regulation of locomotion;0.00674935636547626!GO:0040011;locomotion;0.00675343688957088!GO:0006892;post-Golgi vesicle-mediated transport;0.00694725323655523!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00733740534938324!GO:0045445;myoblast differentiation;0.00733740534938324!GO:0030659;cytoplasmic vesicle membrane;0.00771522994346463!GO:0004386;helicase activity;0.00783135378207257!GO:0030658;transport vesicle membrane;0.00783135378207257!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00795109341765409!GO:0008154;actin polymerization and/or depolymerization;0.0081117694240467!GO:0006974;response to DNA damage stimulus;0.00820238525361039!GO:0008016;regulation of heart contraction;0.00835151622005972!GO:0006414;translational elongation;0.00843451949157575!GO:0007050;cell cycle arrest;0.00848636537772944!GO:0046983;protein dimerization activity;0.00848636537772944!GO:0003724;RNA helicase activity;0.00848636537772944!GO:0030118;clathrin coat;0.00872347549527863!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00883011855181939!GO:0048659;smooth muscle cell proliferation;0.00907938618735545!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00907938618735545!GO:0015002;heme-copper terminal oxidase activity;0.00907938618735545!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00907938618735545!GO:0004129;cytochrome-c oxidase activity;0.00907938618735545!GO:0030134;ER to Golgi transport vesicle;0.00911381632969753!GO:0019752;carboxylic acid metabolic process;0.00930630884449534!GO:0048500;signal recognition particle;0.00933536977973666!GO:0005861;troponin complex;0.00936771866434618!GO:0050794;regulation of cellular process;0.00977981697829402!GO:0030127;COPII vesicle coat;0.00977981697829402!GO:0012507;ER to Golgi transport vesicle membrane;0.00977981697829402!GO:0050811;GABA receptor binding;0.00994700315904772!GO:0007243;protein kinase cascade;0.00996362154461281!GO:0042254;ribosome biogenesis and assembly;0.0100765042440935!GO:0051287;NAD binding;0.0100983410210383!GO:0006007;glucose catabolic process;0.0102350071791408!GO:0007519;skeletal muscle development;0.0102511518613472!GO:0006082;organic acid metabolic process;0.0103284899063219!GO:0008026;ATP-dependent helicase activity;0.0108656247463486!GO:0048514;blood vessel morphogenesis;0.0112460189869521!GO:0012506;vesicle membrane;0.0113732878017627!GO:0016529;sarcoplasmic reticulum;0.0114076307651549!GO:0016528;sarcoplasm;0.0114076307651549!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0115158486821539!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0115158486821539!GO:0019318;hexose metabolic process;0.0115227662391804!GO:0006635;fatty acid beta-oxidation;0.0117031073729883!GO:0005604;basement membrane;0.0117866061803693!GO:0006612;protein targeting to membrane;0.0118087481285171!GO:0030660;Golgi-associated vesicle membrane;0.01202719307807!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0121047460010917!GO:0032535;regulation of cellular component size;0.0121969921769374!GO:0005869;dynactin complex;0.012307123863978!GO:0003729;mRNA binding;0.012472704853107!GO:0001527;microfibril;0.0126371423786529!GO:0005924;cell-substrate adherens junction;0.0127707151248202!GO:0030832;regulation of actin filament length;0.0129173079404715!GO:0051276;chromosome organization and biogenesis;0.0129222449531287!GO:0043681;protein import into mitochondrion;0.013019226185629!GO:0048660;regulation of smooth muscle cell proliferation;0.0130290273943199!GO:0030518;steroid hormone receptor signaling pathway;0.0136680696016931!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0137049561755939!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0137294624859802!GO:0017022;myosin binding;0.0138343576181861!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0143220512679889!GO:0016860;intramolecular oxidoreductase activity;0.0144026910648384!GO:0006937;regulation of muscle contraction;0.0146702034365888!GO:0001525;angiogenesis;0.0146785955014097!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0148920975044944!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0151983961284973!GO:0051674;localization of cell;0.0152833016704295!GO:0006928;cell motility;0.0152833016704295!GO:0018196;peptidyl-asparagine modification;0.0155592868908162!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0155592868908162!GO:0031497;chromatin assembly;0.0155592868908162!GO:0030674;protein binding, bridging;0.0155678536638498!GO:0031072;heat shock protein binding;0.015791890404682!GO:0043034;costamere;0.0158569610107476!GO:0042805;actinin binding;0.0160089926285169!GO:0005975;carbohydrate metabolic process;0.0160186609754028!GO:0000278;mitotic cell cycle;0.0160186609754028!GO:0030055;cell-matrix junction;0.0160186609754028!GO:0005100;Rho GTPase activator activity;0.0160367029730544!GO:0051028;mRNA transport;0.0165312655974579!GO:0048644;muscle morphogenesis;0.0168629444082447!GO:0055008;cardiac muscle morphogensis;0.0168629444082447!GO:0016126;sterol biosynthetic process;0.0168783218505648!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0170093226132318!GO:0065007;biological regulation;0.0170547851282825!GO:0005938;cell cortex;0.0175582633498075!GO:0007265;Ras protein signal transduction;0.0178112608589869!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0181003656577007!GO:0005916;fascia adherens;0.0183981458128695!GO:0008139;nuclear localization sequence binding;0.0184717091496107!GO:0030521;androgen receptor signaling pathway;0.0186376107847748!GO:0044433;cytoplasmic vesicle part;0.0188899794170332!GO:0051087;chaperone binding;0.0192699033660079!GO:0006693;prostaglandin metabolic process;0.0193041744437207!GO:0006692;prostanoid metabolic process;0.0193041744437207!GO:0031901;early endosome membrane;0.019591037097883!GO:0009165;nucleotide biosynthetic process;0.0201502822460306!GO:0045098;type III intermediate filament;0.0207343514328808!GO:0008287;protein serine/threonine phosphatase complex;0.0207587409547955!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.020866863684873!GO:0045047;protein targeting to ER;0.020866863684873!GO:0006633;fatty acid biosynthetic process;0.0210464651776009!GO:0051101;regulation of DNA binding;0.0218808982775271!GO:0006942;regulation of striated muscle contraction;0.0226023732703267!GO:0005996;monosaccharide metabolic process;0.0226816747834884!GO:0019210;kinase inhibitor activity;0.0229236240663364!GO:0006006;glucose metabolic process;0.0229638889504096!GO:0006607;NLS-bearing substrate import into nucleus;0.0229662933736602!GO:0000059;protein import into nucleus, docking;0.0231007229649286!GO:0044255;cellular lipid metabolic process;0.023471137989629!GO:0030218;erythrocyte differentiation;0.0235754030604094!GO:0030334;regulation of cell migration;0.0239157428186124!GO:0005083;small GTPase regulator activity;0.0241100035982354!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0242944785067394!GO:0030176;integral to endoplasmic reticulum membrane;0.0252711688901554!GO:0015631;tubulin binding;0.0253580463734741!GO:0008283;cell proliferation;0.0253987871924341!GO:0051146;striated muscle cell differentiation;0.0253987871924341!GO:0045936;negative regulation of phosphate metabolic process;0.0254283795966427!GO:0030119;AP-type membrane coat adaptor complex;0.0254283795966427!GO:0009081;branched chain family amino acid metabolic process;0.0254283795966427!GO:0046474;glycerophospholipid biosynthetic process;0.0256393952341773!GO:0019079;viral genome replication;0.0258319718557687!GO:0009966;regulation of signal transduction;0.0260476567369752!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0262377268339292!GO:0005813;centrosome;0.0262941286303116!GO:0051098;regulation of binding;0.0264759508784337!GO:0045045;secretory pathway;0.0267185475819685!GO:0015036;disulfide oxidoreductase activity;0.0274905298643799!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0275587213253214!GO:0006508;proteolysis;0.0275628219930185!GO:0030049;muscle filament sliding;0.0281386726750942!GO:0033275;actin-myosin filament sliding;0.0281386726750942!GO:0050681;androgen receptor binding;0.0287884680626545!GO:0008147;structural constituent of bone;0.0299587679440908!GO:0055001;muscle cell development;0.0299587679440908!GO:0030239;myofibril assembly;0.0299587679440908!GO:0055002;striated muscle cell development;0.0299587679440908!GO:0007266;Rho protein signal transduction;0.0299587679440908!GO:0043022;ribosome binding;0.0308109678332956!GO:0014866;skeletal myofibril assembly;0.030920180984899!GO:0005862;muscle thin filament tropomyosin;0.0312809327895593!GO:0007030;Golgi organization and biogenesis;0.0312809327895593!GO:0007507;heart development;0.0317753045424106!GO:0005584;collagen type I;0.0319432241566183!GO:0006595;polyamine metabolic process;0.0321132607056507!GO:0046426;negative regulation of JAK-STAT cascade;0.0326583608766301!GO:0051235;maintenance of localization;0.0327324892660553!GO:0030172;troponin C binding;0.0329360367576925!GO:0007006;mitochondrial membrane organization and biogenesis;0.0329360367576925!GO:0035035;histone acetyltransferase binding;0.0339630280988613!GO:0030131;clathrin adaptor complex;0.0344669188646901!GO:0030198;extracellular matrix organization and biogenesis;0.0347947683261514!GO:0004111;creatine kinase activity;0.0355295802250291!GO:0030031;cell projection biogenesis;0.0356912764099804!GO:0030041;actin filament polymerization;0.0358121692799955!GO:0005200;structural constituent of cytoskeleton;0.0360792193773091!GO:0006096;glycolysis;0.0365536234750933!GO:0005684;U2-dependent spliceosome;0.0367241326846605!GO:0005637;nuclear inner membrane;0.03673903510979!GO:0004448;isocitrate dehydrogenase activity;0.0372169469186197!GO:0030522;intracellular receptor-mediated signaling pathway;0.037622719344186!GO:0006260;DNA replication;0.0383766314556449!GO:0005925;focal adhesion;0.0387577864789903!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0399958499897471!GO:0019058;viral infectious cycle;0.0401812333774625!GO:0031625;ubiquitin protein ligase binding;0.0403704015452254!GO:0003690;double-stranded DNA binding;0.0405493336762568!GO:0016584;nucleosome positioning;0.0408664325922124!GO:0031124;mRNA 3'-end processing;0.0413050291371465!GO:0005832;chaperonin-containing T-complex;0.041722338745371!GO:0006839;mitochondrial transport;0.042468800174979!GO:0048487;beta-tubulin binding;0.0426698649294469!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0432283917148294!GO:0019208;phosphatase regulator activity;0.0435107253049119!GO:0000082;G1/S transition of mitotic cell cycle;0.0436682462155885!GO:0003676;nucleic acid binding;0.0438065977189791!GO:0042326;negative regulation of phosphorylation;0.0438529832083146!GO:0005518;collagen binding;0.0442467107296931!GO:0016272;prefoldin complex;0.0456654906112724!GO:0046394;carboxylic acid biosynthetic process;0.0460414232027609!GO:0016053;organic acid biosynthetic process;0.0460414232027609!GO:0007028;cytoplasm organization and biogenesis;0.0460414232027609!GO:0048251;elastic fiber assembly;0.0467402195439235!GO:0005521;lamin binding;0.047069968520062!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.0475158925624635!GO:0006281;DNA repair;0.04772868658875!GO:0045663;positive regulation of myoblast differentiation;0.0480663641699097!GO:0005694;chromosome;0.0486073870655989!GO:0032780;negative regulation of ATPase activity;0.0487859013262186!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0490676582555919!GO:0031543;peptidyl-proline dioxygenase activity;0.0491614663303005!GO:0008047;enzyme activator activity;0.0497825773145418 | |||
|sample_id=10057 | |sample_id=10057 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=umbilical cord | |sample_tissue=umbilical cord | ||
|top_motifs=TBP:4.41655543587;SRF:3.76166410562;MEF2{A,B,C,D}:3.51728702547;NR5A1,2:2.99200778611;RXRA_VDR{dimer}:2.43995913892;TFAP4:2.43584921547;NFE2L1:2.27627030121;MAFB:2.22437039523;GATA4:2.18393483382;ESR1:2.12886942792;SPZ1:2.12473612535;SMAD1..7,9:2.12266663009;GCM1,2:2.04228641492;GLI1..3:1.97296605673;NR1H4:1.91414844576;NR3C1:1.91060036648;NR6A1:1.8872516527;HOX{A4,D4}:1.85020135538;ZNF423:1.8266556914;TFCP2:1.80204616159;TFAP2{A,C}:1.78137872057;IKZF1:1.7067461301;TEAD1:1.67316672777;MYBL2:1.58990863455;KLF4:1.58767864337;GATA6:1.46207806635;FOXL1:1.45488020301;NKX3-1:1.43407152884;XBP1:1.42852839902;AR:1.42298595322;TBX4,5:1.38802814777;TAL1_TCF{3,4,12}:1.34276243999;ZNF238:1.30523928928;ZNF384:1.30390932958;ESRRA:1.27198155422;RORA:1.2646221095;TOPORS:1.24128238353;SOX5:1.18367056696;FOXA2:1.15863833634;SNAI1..3:1.15664362104;GTF2A1,2:1.13077640295;FOXM1:1.1228767854;PRDM1:1.11923651628;HAND1,2:1.07039253853;FOX{I1,J2}:1.06751125944;IKZF2:1.05545137533;TEF:1.05491058248;NKX3-2:0.997695381277;NFATC1..3:0.963800977467;LHX3,4:0.945877062846;UFEwm:0.935476735468;PATZ1:0.911759107123;MZF1:0.901124897733;MAZ:0.878657903973;HIC1:0.874839319568;ZEB1:0.869135959415;GTF2I:0.85910067734;MTE{core}:0.818377664437;PAX5:0.804767291335;ZIC1..3:0.804633325176;HOXA9_MEIS1:0.800020643835;TLX1..3_NFIC{dimer}:0.799529173534;FOXO1,3,4:0.771298678072;ZNF148:0.746064380468;MED-1{core}:0.728189114419;HOX{A5,B5}:0.713872602235;FOX{D1,D2}:0.70323352897;RREB1:0.69516820886;RBPJ:0.630892752568;LMO2:0.63022323371;T:0.602994772798;MYOD1:0.588696258791;ATF6:0.55158946569;NANOG{mouse}:0.537391098322;FOXD3:0.532114666051;TP53:0.52515536712;HMGA1,2:0.50181674522;NHLH1,2:0.500456522883;NKX2-1,4:0.496239940261;TGIF1:0.48913594415;PPARG:0.485303077237;ATF2:0.460882158714;CDC5L:0.45303700166;EBF1:0.447460404137;GFI1B:0.438574320375;MYFfamily:0.430195297604;SP1:0.415850795638;MTF1:0.406593935474;VSX1,2:0.39627490105;SOX17:0.395538197216;HNF1A:0.378433724663;NKX2-3_NKX2-5:0.37533238836;EVI1:0.354581037891;FOXP3:0.342461575822;YY1:0.334202134308;STAT2,4,6:0.331407548768;REST:0.327164345147;HMX1:0.286983647694;TLX2:0.272339137806;GZF1:0.263564831164;AIRE:0.25075011442;EP300:0.244018192042;NANOG:0.239368407283;BPTF:0.228670965356;FOXP1:0.206625139964;TFAP2B:0.190692395575;ZBTB16:0.172757899914;EGR1..3:0.157983284502;HBP1_HMGB_SSRP1_UBTF:0.152106739009;CDX1,2,4:0.1181226071;ALX4:0.108500105936;BREu{core}:0.101828821786;PAX1,9:0.0858097429529;JUN:0.0211445821895;XCPE1{core}:0.0148960233535;FOSL2:-0.005081830512;HNF4A_NR2F1,2:-0.0301648816181;GFI1:-0.0395397882293;PBX1:-0.0488409526492;LEF1_TCF7_TCF7L1,2:-0.0562116088951;SOX2:-0.0577005174313;POU6F1:-0.0588742847646;HLF:-0.0683161909823;CUX2:-0.08984917529;POU5F1:-0.176412395526;HOX{A6,A7,B6,B7}:-0.189358796017;ATF4:-0.209093347778;ARID5B:-0.221728448018;SOX{8,9,10}:-0.233065077414;DBP:-0.235350362795;PAX6:-0.258022765919;RXR{A,B,G}:-0.262104597575;RFX1:-0.291939750321;ALX1:-0.302783569257;IRF7:-0.303126073001;HIF1A:-0.304170046358;PITX1..3:-0.33150370842;ETS1,2:-0.344732836855;FOS_FOS{B,L1}_JUN{B,D}:-0.355596419246;FOXQ1:-0.407959304214;NKX2-2,8:-0.411231843733;SPI1:-0.42238104508;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.422695959533;NFIX:-0.432815600562;PRRX1,2:-0.435280120343;FOX{F1,F2,J1}:-0.461434137682;ADNP_IRX_SIX_ZHX:-0.475006902528;NKX6-1,2:-0.4990160481;HES1:-0.500151165744;HSF1,2:-0.503157932754;TFDP1:-0.511189768304;ZFP161:-0.513642426102;NFE2:-0.515912900516;PAX2:-0.527554598163;EN1,2:-0.530060619225;SPIB:-0.547204276;POU3F1..4:-0.553450660743;NFE2L2:-0.555567811805;IRF1,2:-0.560393480039;RUNX1..3:-0.564944727762;BACH2:-0.590435338566;NFKB1_REL_RELA:-0.607821399683;PAX4:-0.641698259148;E2F1..5:-0.642705415499;NFY{A,B,C}:-0.671172461433;FOXN1:-0.689452066137;CEBPA,B_DDIT3:-0.759487148804;ATF5_CREB3:-0.793186001781;ZBTB6:-0.80809790431;AHR_ARNT_ARNT2:-0.828837840236;CREB1:-0.884910379145;POU2F1..3:-0.889854815077;RFX2..5_RFXANK_RFXAP:-0.906720768842;ONECUT1,2:-0.923723003402;POU1F1:-0.927223502968;SREBF1,2:-0.946853501306;DMAP1_NCOR{1,2}_SMARC:-0.947751397355;ZNF143:-0.997639698995;NFIL3:-0.999577248001;STAT1,3:-1.05247657148;bHLH_family:-1.09587830014;PDX1:-1.10440764508;NRF1:-1.11430209841;ELF1,2,4:-1.23169290126;MYB:-1.2420886172;CRX:-1.27060556326;OCT4_SOX2{dimer}:-1.30091331063;STAT5{A,B}:-1.65136653854;PAX3,7:-2.06458251531;PAX8:-2.1309293705;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.59122467763;ELK1,4_GABP{A,B1}:-2.80999645724 | |top_motifs=TBP:4.41655543587;SRF:3.76166410562;MEF2{A,B,C,D}:3.51728702547;NR5A1,2:2.99200778611;RXRA_VDR{dimer}:2.43995913892;TFAP4:2.43584921547;NFE2L1:2.27627030121;MAFB:2.22437039523;GATA4:2.18393483382;ESR1:2.12886942792;SPZ1:2.12473612535;SMAD1..7,9:2.12266663009;GCM1,2:2.04228641492;GLI1..3:1.97296605673;NR1H4:1.91414844576;NR3C1:1.91060036648;NR6A1:1.8872516527;HOX{A4,D4}:1.85020135538;ZNF423:1.8266556914;TFCP2:1.80204616159;TFAP2{A,C}:1.78137872057;IKZF1:1.7067461301;TEAD1:1.67316672777;MYBL2:1.58990863455;KLF4:1.58767864337;GATA6:1.46207806635;FOXL1:1.45488020301;NKX3-1:1.43407152884;XBP1:1.42852839902;AR:1.42298595322;TBX4,5:1.38802814777;TAL1_TCF{3,4,12}:1.34276243999;ZNF238:1.30523928928;ZNF384:1.30390932958;ESRRA:1.27198155422;RORA:1.2646221095;TOPORS:1.24128238353;SOX5:1.18367056696;FOXA2:1.15863833634;SNAI1..3:1.15664362104;GTF2A1,2:1.13077640295;FOXM1:1.1228767854;PRDM1:1.11923651628;HAND1,2:1.07039253853;FOX{I1,J2}:1.06751125944;IKZF2:1.05545137533;TEF:1.05491058248;NKX3-2:0.997695381277;NFATC1..3:0.963800977467;LHX3,4:0.945877062846;UFEwm:0.935476735468;PATZ1:0.911759107123;MZF1:0.901124897733;MAZ:0.878657903973;HIC1:0.874839319568;ZEB1:0.869135959415;GTF2I:0.85910067734;MTE{core}:0.818377664437;PAX5:0.804767291335;ZIC1..3:0.804633325176;HOXA9_MEIS1:0.800020643835;TLX1..3_NFIC{dimer}:0.799529173534;FOXO1,3,4:0.771298678072;ZNF148:0.746064380468;MED-1{core}:0.728189114419;HOX{A5,B5}:0.713872602235;FOX{D1,D2}:0.70323352897;RREB1:0.69516820886;RBPJ:0.630892752568;LMO2:0.63022323371;T:0.602994772798;MYOD1:0.588696258791;ATF6:0.55158946569;NANOG{mouse}:0.537391098322;FOXD3:0.532114666051;TP53:0.52515536712;HMGA1,2:0.50181674522;NHLH1,2:0.500456522883;NKX2-1,4:0.496239940261;TGIF1:0.48913594415;PPARG:0.485303077237;ATF2:0.460882158714;CDC5L:0.45303700166;EBF1:0.447460404137;GFI1B:0.438574320375;MYFfamily:0.430195297604;SP1:0.415850795638;MTF1:0.406593935474;VSX1,2:0.39627490105;SOX17:0.395538197216;HNF1A:0.378433724663;NKX2-3_NKX2-5:0.37533238836;EVI1:0.354581037891;FOXP3:0.342461575822;YY1:0.334202134308;STAT2,4,6:0.331407548768;REST:0.327164345147;HMX1:0.286983647694;TLX2:0.272339137806;GZF1:0.263564831164;AIRE:0.25075011442;EP300:0.244018192042;NANOG:0.239368407283;BPTF:0.228670965356;FOXP1:0.206625139964;TFAP2B:0.190692395575;ZBTB16:0.172757899914;EGR1..3:0.157983284502;HBP1_HMGB_SSRP1_UBTF:0.152106739009;CDX1,2,4:0.1181226071;ALX4:0.108500105936;BREu{core}:0.101828821786;PAX1,9:0.0858097429529;JUN:0.0211445821895;XCPE1{core}:0.0148960233535;FOSL2:-0.005081830512;HNF4A_NR2F1,2:-0.0301648816181;GFI1:-0.0395397882293;PBX1:-0.0488409526492;LEF1_TCF7_TCF7L1,2:-0.0562116088951;SOX2:-0.0577005174313;POU6F1:-0.0588742847646;HLF:-0.0683161909823;CUX2:-0.08984917529;POU5F1:-0.176412395526;HOX{A6,A7,B6,B7}:-0.189358796017;ATF4:-0.209093347778;ARID5B:-0.221728448018;SOX{8,9,10}:-0.233065077414;DBP:-0.235350362795;PAX6:-0.258022765919;RXR{A,B,G}:-0.262104597575;RFX1:-0.291939750321;ALX1:-0.302783569257;IRF7:-0.303126073001;HIF1A:-0.304170046358;PITX1..3:-0.33150370842;ETS1,2:-0.344732836855;FOS_FOS{B,L1}_JUN{B,D}:-0.355596419246;FOXQ1:-0.407959304214;NKX2-2,8:-0.411231843733;SPI1:-0.42238104508;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.422695959533;NFIX:-0.432815600562;PRRX1,2:-0.435280120343;FOX{F1,F2,J1}:-0.461434137682;ADNP_IRX_SIX_ZHX:-0.475006902528;NKX6-1,2:-0.4990160481;HES1:-0.500151165744;HSF1,2:-0.503157932754;TFDP1:-0.511189768304;ZFP161:-0.513642426102;NFE2:-0.515912900516;PAX2:-0.527554598163;EN1,2:-0.530060619225;SPIB:-0.547204276;POU3F1..4:-0.553450660743;NFE2L2:-0.555567811805;IRF1,2:-0.560393480039;RUNX1..3:-0.564944727762;BACH2:-0.590435338566;NFKB1_REL_RELA:-0.607821399683;PAX4:-0.641698259148;E2F1..5:-0.642705415499;NFY{A,B,C}:-0.671172461433;FOXN1:-0.689452066137;CEBPA,B_DDIT3:-0.759487148804;ATF5_CREB3:-0.793186001781;ZBTB6:-0.80809790431;AHR_ARNT_ARNT2:-0.828837840236;CREB1:-0.884910379145;POU2F1..3:-0.889854815077;RFX2..5_RFXANK_RFXAP:-0.906720768842;ONECUT1,2:-0.923723003402;POU1F1:-0.927223502968;SREBF1,2:-0.946853501306;DMAP1_NCOR{1,2}_SMARC:-0.947751397355;ZNF143:-0.997639698995;NFIL3:-0.999577248001;STAT1,3:-1.05247657148;bHLH_family:-1.09587830014;PDX1:-1.10440764508;NRF1:-1.11430209841;ELF1,2,4:-1.23169290126;MYB:-1.2420886172;CRX:-1.27060556326;OCT4_SOX2{dimer}:-1.30091331063;STAT5{A,B}:-1.65136653854;PAX3,7:-2.06458251531;PAX8:-2.1309293705;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.59122467763;ELK1,4_GABP{A,B1}:-2.80999645724 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10057-101H3;search_select_hide=table117:FF:10057-101H3 | |||
}} | }} | ||
Latest revision as of 12:18, 3 June 2020
| Name: | umbilical cord, fetal, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11765 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11765
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11765
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.892 |
| 10 | 10 | 0.312 |
| 100 | 100 | 0.842 |
| 101 | 101 | 0.876 |
| 102 | 102 | 0.77 |
| 103 | 103 | 0.879 |
| 104 | 104 | 0.787 |
| 105 | 105 | 0.836 |
| 106 | 106 | 0.0272 |
| 107 | 107 | 0.00283 |
| 108 | 108 | 0.134 |
| 109 | 109 | 0.618 |
| 11 | 11 | 0.714 |
| 110 | 110 | 0.606 |
| 111 | 111 | 0.861 |
| 112 | 112 | 0.49 |
| 113 | 113 | 1.57509e-4 |
| 114 | 114 | 0.544 |
| 115 | 115 | 0.411 |
| 116 | 116 | 0.257 |
| 117 | 117 | 0.0537 |
| 118 | 118 | 0.494 |
| 119 | 119 | 0.151 |
| 12 | 12 | 0.13 |
| 120 | 120 | 0.562 |
| 121 | 121 | 0.655 |
| 122 | 122 | 0.0648 |
| 123 | 123 | 0.207 |
| 124 | 124 | 0.742 |
| 125 | 125 | 0.921 |
| 126 | 126 | 0.423 |
| 127 | 127 | 0.882 |
| 128 | 128 | 0.0752 |
| 129 | 129 | 0.487 |
| 13 | 13 | 0.539 |
| 130 | 130 | 0.907 |
| 131 | 131 | 0.211 |
| 132 | 132 | 0.069 |
| 133 | 133 | 0.545 |
| 134 | 134 | 0.613 |
| 135 | 135 | 0.194 |
| 136 | 136 | 0.262 |
| 137 | 137 | 0.362 |
| 138 | 138 | 0.632 |
| 139 | 139 | 0.139 |
| 14 | 14 | 0.974 |
| 140 | 140 | 0.531 |
| 141 | 141 | 0.687 |
| 142 | 142 | 0.428 |
| 143 | 143 | 0.501 |
| 144 | 144 | 0.217 |
| 145 | 145 | 0.789 |
| 146 | 146 | 0.679 |
| 147 | 147 | 0.0388 |
| 148 | 148 | 0.589 |
| 149 | 149 | 0.0251 |
| 15 | 15 | 0.372 |
| 150 | 150 | 0.825 |
| 151 | 151 | 0.104 |
| 152 | 152 | 0.329 |
| 153 | 153 | 0.425 |
| 154 | 154 | 0.67 |
| 155 | 155 | 0.652 |
| 156 | 156 | 0.899 |
| 157 | 157 | 0.399 |
| 158 | 158 | 0.65 |
| 159 | 159 | 0.501 |
| 16 | 16 | 0.165 |
| 160 | 160 | 0.0498 |
| 161 | 161 | 0.53 |
| 162 | 162 | 0.143 |
| 163 | 163 | 0.678 |
| 164 | 164 | 0.82 |
| 165 | 165 | 0.307 |
| 166 | 166 | 0.0805 |
| 167 | 167 | 0.108 |
| 168 | 168 | 0.0832 |
| 169 | 169 | 0.022 |
| 17 | 17 | 0.327 |
| 18 | 18 | 0.847 |
| 19 | 19 | 0.00947 |
| 2 | 2 | 0.0238 |
| 20 | 20 | 0.0679 |
| 21 | 21 | 0.699 |
| 22 | 22 | 0.242 |
| 23 | 23 | 0.0137 |
| 24 | 24 | 0.453 |
| 25 | 25 | 0.655 |
| 26 | 26 | 0.904 |
| 27 | 27 | 0.318 |
| 28 | 28 | 0.766 |
| 29 | 29 | 0.148 |
| 3 | 3 | 0.671 |
| 30 | 30 | 0.038 |
| 31 | 31 | 0.468 |
| 32 | 32 | 1.99363e-9 |
| 33 | 33 | 0.233 |
| 34 | 34 | 0.233 |
| 35 | 35 | 0.67 |
| 36 | 36 | 0.0772 |
| 37 | 37 | 0.993 |
| 38 | 38 | 0.609 |
| 39 | 39 | 0.089 |
| 4 | 4 | 0.814 |
| 40 | 40 | 0.553 |
| 41 | 41 | 0.337 |
| 42 | 42 | 0.713 |
| 43 | 43 | 0.625 |
| 44 | 44 | 0.324 |
| 45 | 45 | 0.131 |
| 46 | 46 | 0.244 |
| 47 | 47 | 0.847 |
| 48 | 48 | 0.882 |
| 49 | 49 | 0.428 |
| 5 | 5 | 0.672 |
| 50 | 50 | 0.816 |
| 51 | 51 | 0.586 |
| 52 | 52 | 0.139 |
| 53 | 53 | 0.782 |
| 54 | 54 | 0.425 |
| 55 | 55 | 0.551 |
| 56 | 56 | 0.996 |
| 57 | 57 | 0.461 |
| 58 | 58 | 0.68 |
| 59 | 59 | 0.175 |
| 6 | 6 | 0.307 |
| 60 | 60 | 0.222 |
| 61 | 61 | 0.767 |
| 62 | 62 | 0.275 |
| 63 | 63 | 0.516 |
| 64 | 64 | 0.483 |
| 65 | 65 | 0.115 |
| 66 | 66 | 0.0563 |
| 67 | 67 | 0.448 |
| 68 | 68 | 0.436 |
| 69 | 69 | 0.247 |
| 7 | 7 | 0.806 |
| 70 | 70 | 0.535 |
| 71 | 71 | 0.753 |
| 72 | 72 | 0.914 |
| 73 | 73 | 0.972 |
| 74 | 74 | 0.2 |
| 75 | 75 | 0.405 |
| 76 | 76 | 0.144 |
| 77 | 77 | 0.0738 |
| 78 | 78 | 0.512 |
| 79 | 79 | 0.16 |
| 8 | 8 | 0.641 |
| 80 | 80 | 0.498 |
| 81 | 81 | 0.478 |
| 82 | 82 | 0.115 |
| 83 | 83 | 0.734 |
| 84 | 84 | 0.425 |
| 85 | 85 | 0.0344 |
| 86 | 86 | 0.518 |
| 87 | 87 | 0.0211 |
| 88 | 88 | 0.485 |
| 89 | 89 | 0.0727 |
| 9 | 9 | 0.477 |
| 90 | 90 | 0.202 |
| 91 | 91 | 0.0095 |
| 92 | 92 | 0.0502 |
| 93 | 93 | 0.736 |
| 94 | 94 | 0.45 |
| 95 | 95 | 0.0301 |
| 96 | 96 | 0.192 |
| 97 | 97 | 0.78 |
| 98 | 98 | 0.515 |
| 99 | 99 | 0.216 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11765
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002331 (umbilical cord)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010057 (human umbilical cord - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0000358 (blastocyst)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)
