FF:10066-101I3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001134 | |DRA_sample_Accession=CAGE@SAMD00005384 | ||
|accession_numbers=CAGE;DRX008721;DRR009593;DRZ001018;DRZ002403;DRZ012368;DRZ013753 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010066 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr19:46801639..46801699,+!p1@HIF3A!2.48!301.55!HIF3A;;chr19:46800289..46800327,+!p2@HIF3A!2.36!229.64!HIF3A;;chr1:203055129..203055147,-!p1@MYOG!2.25!175.13!MYOG;;chr15:42749722..42749739,-!p2@ZFP106!2.23!294.59!ZFP106;;chr1:40105299..40105326,-!p1@HEYL!2.09!120.62!HEYL;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.04!109.02!PEG3;;chr9:20382446..20382493,-!p4@MLLT3!1.91!81.19!MLLT3;;chr10:131762504..131762555,-!p1@EBF3!1.86!71.91!EBF3;;chr8:25902876..25902936,-!p1@EBF2!1.86!70.75!EBF2;;chr12:81110684..81110700,+!p1@MYF5!1.80!61.47!MYF5;;chr2:24714729..24714761,+!p1@NCOA1!1.78!59.15!NCOA1;;chr20:62680984..62680999,-!p1@SOX18!1.72!67.27!SOX18;;chr1:119530493..119530572,-!p1@TBX15!1.72!51.03!TBX15;;chr2:5832508..5832524,+!p1@SOX11!1.70!48.71!SOX11;;chr9:1050331..1050363,+!p1@DMRT2!1.69!47.55!DMRT2;;chr22:19748231..19748317,+!p1@TBX1!1.68!46.39!TBX1;;chr19:2867325..2867348,+!p1@ZNF556!1.68!46.39!ZNF556;;chr11:125034640..125034655,+!p1@PKNOX2!1.65!44.07!PKNOX2;;chr8:10588010..10588030,-!p1@SOX7!1.64!42.91!SOX7;;chr7:15726296..15726315,-!p1@MEOX2!1.62!40.59!MEOX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.59!96.26!ZFPM2;;chr12:81101404..81101421,+!p1@MYF6!1.59!38.27!MYF6;;chr14:61116183..61116208,-!p1@SIX1!1.55!125.26!SIX1;;chr5:158526917..158526932,-!p1@EBF1!1.51!75.39!EBF1;;chr20:50179368..50179392,-!p2@NFATC2!1.50!39.43!NFATC2;;chr17:1959369..1959388,+!p2@HIC1!1.49!76.55!HIC1;;chr1:165414227..165414242,-!p2@RXRG!1.48!29.00!RXRG;;chr21:39870339..39870443,-!p1@ERG!1.46!27.84!ERG;;chr16:1031762..1031781,+!p1@SOX8!1.46!27.84!SOX8;;chr20:30433396..30433414,-!p1@FOXS1!1.44!26.68!FOXS1;;chr8:55370487..55370503,+!p1@SOX17!1.44!26.68!SOX17;;chr2:19558373..19558392,-!p1@OSR1!1.43!69.59!OSR1;;chr1:170699295..170699343,+!p35@PRRX1!1.42!25.52!PRRX1;;chr1:214161272..214161322,+!p1@PROX1!1.40!33.63!PROX1;;chr12:54779511..54779577,-!p5@ZNF385A!1.40!24.36!ZNF385A;;chr6:126070769..126070801,+!p1@HEY2!1.38!26.68!HEY2;;chr13:72441315..72441454,-!p1@DACH1!1.36!42.91!DACH1;;chr11:17741254..17741282,+!p2@MYOD1!1.36!22.04!MYOD1;;chr17:6926362..6926377,+!p1@BCL6B!1.36!22.04!BCL6B;;chr7:15726243..15726293,-!p2@MEOX2!1.36!22.04!MEOX2;;chr7:27205136..27205164,-!p1@HOXA9!1.36!22.04!HOXA9;;chr15:57511609..57511651,+!p2@TCF12!1.34!34.79!TCF12;;chr16:30389131..30389144,+!p16@ZNF48!1.34!20.88!ZNF48;;chr11:16629261..16629284,-!p1@SOX6!1.34!20.88!SOX6;;chr12:81101472..81101483,+!p2@MYF6!1.34!20.88!MYF6;;chr1:10856639..10856662,-!p2@CASZ1!1.29!18.56!CASZ1;;chr16:79634624..79634642,-!p1@MAF!1.28!69.59!MAF;;chr19:46843663..46843674,+!p8@HIF3A!1.26!17.40!HIF3A;;chr12:125003087..125003141,-!p4@NCOR2!1.24!20.88!NCOR2;;chr8:106330696..106330719,+!p2@ZFPM2!1.24!20.88!ZFPM2;;chr1:170632285..170632309,+!p1@PRRX1!1.24!18.56!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!1.21!15.08!KDM5D;;chr2:119605214..119605230,-!p1@EN1!1.21!15.08!EN1;;chr18:22932080..22932170,-!p1@ZNF521!1.19!60.31!ZNF521;;chr16:79634595..79634620,-!p2@MAF!1.18!25.52!MAF;;chr2:145277882..145277967,-!p3@ZEB2!1.18!24.36!ZEB2;;chr1:23696308..23696339,-!p2@ZNF436!1.17!29.00!ZNF436;;chr16:30389152..30389161,+!p23@ZNF48!1.17!13.92!ZNF48;;chr7:15726176..15726191,-!p3@MEOX2!1.17!13.92!MEOX2;;chr12:52437488..52437507,+!p2@NR4A1!1.17!13.92!NR4A1;;chr13:72441074..72441172,-!p2@DACH1!1.17!13.92!DACH1;;chr6:144329384..144329405,-!p1@PLAGL1!1.16!154.26!PLAGL1;;chr17:53342311..53342400,+!p1@HLF!1.15!15.08!HLF;;chr15:96873984..96873999,+!p3@NR2F2!1.14!92.79!NR2F2;;chr12:3069037..3069119,+!p2@TEAD4!1.14!44.07!TEAD4;;chr7:150945865..150945896,-!p4@SMARCD3!1.14!12.76!SMARCD3;;chr7:27196217..27196246,-!p2@HOXA7!1.14!12.76!HOXA7;;chr3:25470156..25470227,+!p2@RARB!1.14!12.76!RARB;;chr16:85932760..85932775,+!p1@IRF8!1.14!12.76!IRF8;;chr7:150945754..150945789,-!p2@SMARCD3!1.13!38.27!SMARCD3;;chr16:54320675..54320715,-!p1@IRX3!1.13!26.68!IRX3;;chr7:150946015..150946070,-!p3@SMARCD3!1.12!26.68!SMARCD3;;chr6:85474299..85474324,-!p1@TBX18!1.12!22.04!TBX18;;chrX:131623044..131623089,-!p1@MBNL3!1.11!49.87!MBNL3;;chr10:104001289..104001310,-!p2@PITX3!1.10!11.60!PITX3;;chr12:54378923..54378966,+!p1@HOXC10!1.10!11.60!HOXC10;;chr1:18957333..18957375,+!p1@PAX7!1.10!11.60!PAX7;;chr1:18957605..18957623,+!p3@PAX7!1.10!11.60!PAX7;;chr5:158527104..158527135,-!p4@EBF1!1.10!11.60!EBF1;;chr7:27192185..27192209,-!p1@HOXA3!1.10!11.60!HOXA3;;chr8:144512897..144512903,-!p1@MAFA!1.10!11.60!MAFA;;chr8:77593474..77593612,+!p1@ZFHX4!1.09!47.55!ZFHX4;;chr3:12330560..12330579,+!p1@PPARG!1.08!12.76!PPARG;;chr2:145277640..145277771,-!p1@ZEB2!1.07!143.82!ZEB2;;chr10:114709999..114710031,+!p1@TCF7L2!1.06!247.04!TCF7L2;;chr11:125034605..125034636,+!p2@PKNOX2!1.06!10.44!PKNOX2;;chr11:16629205..16629216,-!p16@SOX6!1.06!10.44!SOX6;;chr12:3068668..3068689,+!p7@TEAD4!1.06!10.44!TEAD4;;chr9:124991204..124991246,-!p1@LHX6!1.06!10.44!LHX6;;chr5:88119715..88119757,-!p11@MEF2C!1.06!10.44!MEF2C;;chr7:100065686..100065701,-!p2@TSC22D4!1.06!10.44!TSC22D4;;chr1:151804244..151804310,-!p1@RORC!1.06!10.44!RORC;;chr1:18958008..18958023,+!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| |expression_enrichment_score=chr19:46801639..46801699,+!p1@HIF3A!2.48!301.55!HIF3A;;chr19:46800289..46800327,+!p2@HIF3A!2.36!229.64!HIF3A;;chr1:203055129..203055147,-!p1@MYOG!2.25!175.13!MYOG;;chr15:42749722..42749739,-!p2@ZFP106!2.23!294.59!ZFP106;;chr1:40105299..40105326,-!p1@HEYL!2.09!120.62!HEYL;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.04!109.02!PEG3;;chr9:20382446..20382493,-!p4@MLLT3!1.91!81.19!MLLT3;;chr10:131762504..131762555,-!p1@EBF3!1.86!71.91!EBF3;;chr8:25902876..25902936,-!p1@EBF2!1.86!70.75!EBF2;;chr12:81110684..81110700,+!p1@MYF5!1.80!61.47!MYF5;;chr2:24714729..24714761,+!p1@NCOA1!1.78!59.15!NCOA1;;chr20:62680984..62680999,-!p1@SOX18!1.72!67.27!SOX18;;chr1:119530493..119530572,-!p1@TBX15!1.72!51.03!TBX15;;chr2:5832508..5832524,+!p1@SOX11!1.70!48.71!SOX11;;chr9:1050331..1050363,+!p1@DMRT2!1.69!47.55!DMRT2;;chr22:19748231..19748317,+!p1@TBX1!1.68!46.39!TBX1;;chr19:2867325..2867348,+!p1@ZNF556!1.68!46.39!ZNF556;;chr11:125034640..125034655,+!p1@PKNOX2!1.65!44.07!PKNOX2;;chr8:10588010..10588030,-!p1@SOX7!1.64!42.91!SOX7;;chr7:15726296..15726315,-!p1@MEOX2!1.62!40.59!MEOX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.59!96.26!ZFPM2;;chr12:81101404..81101421,+!p1@MYF6!1.59!38.27!MYF6;;chr14:61116183..61116208,-!p1@SIX1!1.55!125.26!SIX1;;chr5:158526917..158526932,-!p1@EBF1!1.51!75.39!EBF1;;chr20:50179368..50179392,-!p2@NFATC2!1.50!39.43!NFATC2;;chr17:1959369..1959388,+!p2@HIC1!1.49!76.55!HIC1;;chr1:165414227..165414242,-!p2@RXRG!1.48!29.00!RXRG;;chr21:39870339..39870443,-!p1@ERG!1.46!27.84!ERG;;chr16:1031762..1031781,+!p1@SOX8!1.46!27.84!SOX8;;chr20:30433396..30433414,-!p1@FOXS1!1.44!26.68!FOXS1;;chr8:55370487..55370503,+!p1@SOX17!1.44!26.68!SOX17;;chr2:19558373..19558392,-!p1@OSR1!1.43!69.59!OSR1;;chr1:170699295..170699343,+!p35@PRRX1!1.42!25.52!PRRX1;;chr1:214161272..214161322,+!p1@PROX1!1.40!33.63!PROX1;;chr12:54779511..54779577,-!p5@ZNF385A!1.40!24.36!ZNF385A;;chr6:126070769..126070801,+!p1@HEY2!1.38!26.68!HEY2;;chr13:72441315..72441454,-!p1@DACH1!1.36!42.91!DACH1;;chr11:17741254..17741282,+!p2@MYOD1!1.36!22.04!MYOD1;;chr17:6926362..6926377,+!p1@BCL6B!1.36!22.04!BCL6B;;chr7:15726243..15726293,-!p2@MEOX2!1.36!22.04!MEOX2;;chr7:27205136..27205164,-!p1@HOXA9!1.36!22.04!HOXA9;;chr15:57511609..57511651,+!p2@TCF12!1.34!34.79!TCF12;;chr16:30389131..30389144,+!p16@ZNF48!1.34!20.88!ZNF48;;chr11:16629261..16629284,-!p1@SOX6!1.34!20.88!SOX6;;chr12:81101472..81101483,+!p2@MYF6!1.34!20.88!MYF6;;chr1:10856639..10856662,-!p2@CASZ1!1.29!18.56!CASZ1;;chr16:79634624..79634642,-!p1@MAF!1.28!69.59!MAF;;chr19:46843663..46843674,+!p8@HIF3A!1.26!17.40!HIF3A;;chr12:125003087..125003141,-!p4@NCOR2!1.24!20.88!NCOR2;;chr8:106330696..106330719,+!p2@ZFPM2!1.24!20.88!ZFPM2;;chr1:170632285..170632309,+!p1@PRRX1!1.24!18.56!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!1.21!15.08!KDM5D;;chr2:119605214..119605230,-!p1@EN1!1.21!15.08!EN1;;chr18:22932080..22932170,-!p1@ZNF521!1.19!60.31!ZNF521;;chr16:79634595..79634620,-!p2@MAF!1.18!25.52!MAF;;chr2:145277882..145277967,-!p3@ZEB2!1.18!24.36!ZEB2;;chr1:23696308..23696339,-!p2@ZNF436!1.17!29.00!ZNF436;;chr16:30389152..30389161,+!p23@ZNF48!1.17!13.92!ZNF48;;chr7:15726176..15726191,-!p3@MEOX2!1.17!13.92!MEOX2;;chr12:52437488..52437507,+!p2@NR4A1!1.17!13.92!NR4A1;;chr13:72441074..72441172,-!p2@DACH1!1.17!13.92!DACH1;;chr6:144329384..144329405,-!p1@PLAGL1!1.16!154.26!PLAGL1;;chr17:53342311..53342400,+!p1@HLF!1.15!15.08!HLF;;chr15:96873984..96873999,+!p3@NR2F2!1.14!92.79!NR2F2;;chr12:3069037..3069119,+!p2@TEAD4!1.14!44.07!TEAD4;;chr7:150945865..150945896,-!p4@SMARCD3!1.14!12.76!SMARCD3;;chr7:27196217..27196246,-!p2@HOXA7!1.14!12.76!HOXA7;;chr3:25470156..25470227,+!p2@RARB!1.14!12.76!RARB;;chr16:85932760..85932775,+!p1@IRF8!1.14!12.76!IRF8;;chr7:150945754..150945789,-!p2@SMARCD3!1.13!38.27!SMARCD3;;chr16:54320675..54320715,-!p1@IRX3!1.13!26.68!IRX3;;chr7:150946015..150946070,-!p3@SMARCD3!1.12!26.68!SMARCD3;;chr6:85474299..85474324,-!p1@TBX18!1.12!22.04!TBX18;;chrX:131623044..131623089,-!p1@MBNL3!1.11!49.87!MBNL3;;chr10:104001289..104001310,-!p2@PITX3!1.10!11.60!PITX3;;chr12:54378923..54378966,+!p1@HOXC10!1.10!11.60!HOXC10;;chr1:18957333..18957375,+!p1@PAX7!1.10!11.60!PAX7;;chr1:18957605..18957623,+!p3@PAX7!1.10!11.60!PAX7;;chr5:158527104..158527135,-!p4@EBF1!1.10!11.60!EBF1;;chr7:27192185..27192209,-!p1@HOXA3!1.10!11.60!HOXA3;;chr8:144512897..144512903,-!p1@MAFA!1.10!11.60!MAFA;;chr8:77593474..77593612,+!p1@ZFHX4!1.09!47.55!ZFHX4;;chr3:12330560..12330579,+!p1@PPARG!1.08!12.76!PPARG;;chr2:145277640..145277771,-!p1@ZEB2!1.07!143.82!ZEB2;;chr10:114709999..114710031,+!p1@TCF7L2!1.06!247.04!TCF7L2;;chr11:125034605..125034636,+!p2@PKNOX2!1.06!10.44!PKNOX2;;chr11:16629205..16629216,-!p16@SOX6!1.06!10.44!SOX6;;chr12:3068668..3068689,+!p7@TEAD4!1.06!10.44!TEAD4;;chr9:124991204..124991246,-!p1@LHX6!1.06!10.44!LHX6;;chr5:88119715..88119757,-!p11@MEF2C!1.06!10.44!MEF2C;;chr7:100065686..100065701,-!p2@TSC22D4!1.06!10.44!TSC22D4;;chr1:151804244..151804310,-!p1@RORC!1.06!10.44!RORC;;chr1:18958008..18958023,+!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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0003104,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520fetal%252c%2520donor1.CNhs11776.10066-101I3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520fetal%252c%2520donor1.CNhs11776.10066-101I3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520fetal%252c%2520donor1.CNhs11776.10066-101I3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520fetal%252c%2520donor1.CNhs11776.10066-101I3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520fetal%252c%2520donor1.CNhs11776.10066-101I3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10066-101I3 | |id=FF:10066-101I3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010066 | ||
|is_obsolete= | |||
|library_id=CNhs11776 | |||
|library_id_phase_based=2:CNhs11776 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10066 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10066 | |||
|name=skeletal muscle, fetal, donor1 | |name=skeletal muscle, fetal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11776,LSID820,release009,COMPLETED | |profile_hcage=CNhs11776,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0.959932976453363,0,-0.160318030086386,0.521089531926469,0.373861910965175,0.680182459517783,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,1.13851391479937,0,0,1.04074740966293,0,0,0,0,0,0,0,0,0,0,0,0,0.0922374985290843,0.60358693249777,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.334416438693572,0,0.0516972425753374,0.334416438693572,0.803859954925144,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824548174527649,0.314234426539237,0,0,0.0207500093923074,0.295630690705092,0.123219035997703,0,0.334416438693572,0,0,-0.0980353512377064,0.787287060254192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164171172040773,0.521089531926469,0,0,0.219675287918307,0.225363232408266,0,0,0.334416438693572,0,0,0 | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:RtHFN: Skeletal musc | |rna_catalog_number=Cat:RtHFN: Skeletal musc | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=A? | |sample_ethnicity=A? | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.58136204639558e-221!GO:0005737;cytoplasm;1.07276724029817e-165!GO:0043226;organelle;1.79241637945503e-145!GO:0043229;intracellular organelle;3.63789104605495e-145!GO:0043231;intracellular membrane-bound organelle;5.03554072050693e-125!GO:0043227;membrane-bound organelle;5.83229393944907e-125!GO:0044444;cytoplasmic part;1.59808464581871e-117!GO:0044422;organelle part;1.6976418456926e-100!GO:0044446;intracellular organelle part;2.80910533094962e-99!GO:0005515;protein binding;5.88898341115014e-96!GO:0032991;macromolecular complex;2.6946763054511e-90!GO:0030529;ribonucleoprotein complex;9.31841100695755e-62!GO:0044238;primary metabolic process;5.10399662092816e-59!GO:0044237;cellular metabolic process;7.7703420062941e-58!GO:0043170;macromolecule metabolic process;4.51624456063295e-57!GO:0005739;mitochondrion;1.61177435787126e-51!GO:0043234;protein complex;2.07364088686996e-51!GO:0043233;organelle lumen;1.45337401933774e-50!GO:0031974;membrane-enclosed lumen;1.45337401933774e-50!GO:0016043;cellular component organization and biogenesis;5.12915804508468e-49!GO:0003723;RNA binding;3.03339214395784e-48!GO:0005634;nucleus;2.36634861055483e-47!GO:0044428;nuclear part;3.11804765760123e-46!GO:0005840;ribosome;5.04366465044971e-44!GO:0019538;protein metabolic process;2.63425314237889e-41!GO:0003735;structural constituent of ribosome;8.45909684461819e-40!GO:0006412;translation;7.81385698839149e-38!GO:0044429;mitochondrial part;3.3564861791782e-37!GO:0043228;non-membrane-bound organelle;1.07214182709554e-36!GO:0043232;intracellular non-membrane-bound organelle;1.07214182709554e-36!GO:0044260;cellular macromolecule metabolic process;1.17522693249975e-35!GO:0033279;ribosomal subunit;2.10256550691508e-34!GO:0031967;organelle envelope;2.10256550691508e-34!GO:0031975;envelope;3.11547970326524e-34!GO:0044267;cellular protein metabolic process;4.9661766143448e-34!GO:0031090;organelle membrane;5.54792037192796e-33!GO:0005829;cytosol;1.67512657362222e-32!GO:0044249;cellular biosynthetic process;1.31248992912445e-30!GO:0009059;macromolecule biosynthetic process;2.49288930729631e-30!GO:0065003;macromolecular complex assembly;3.09884917372806e-29!GO:0022607;cellular component assembly;3.19911154211542e-29!GO:0006396;RNA processing;6.94917538341883e-29!GO:0009058;biosynthetic process;2.2651535346575e-28!GO:0010467;gene expression;8.6155794414938e-28!GO:0043283;biopolymer metabolic process;9.47349129302361e-28!GO:0006996;organelle organization and biogenesis;1.67759887947442e-26!GO:0033036;macromolecule localization;2.92824018144335e-26!GO:0031981;nuclear lumen;3.02250690643779e-26!GO:0016071;mRNA metabolic process;4.36941568520662e-26!GO:0008380;RNA splicing;4.94439256144731e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.00132472298637e-25!GO:0019866;organelle inner membrane;3.21347580737939e-25!GO:0046907;intracellular transport;8.94297155559535e-25!GO:0015031;protein transport;9.24608345346899e-25!GO:0005740;mitochondrial envelope;2.22593945313352e-24!GO:0008104;protein localization;2.33764238066637e-24!GO:0031966;mitochondrial membrane;7.34821391294419e-24!GO:0044445;cytosolic part;9.19946289393402e-24!GO:0045184;establishment of protein localization;3.01441421480215e-23!GO:0005743;mitochondrial inner membrane;1.41234818988587e-22!GO:0006397;mRNA processing;2.96942476321225e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.93680663606265e-21!GO:0006119;oxidative phosphorylation;1.21397430621666e-20!GO:0008092;cytoskeletal protein binding;5.50263460885188e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.45042596216133e-20!GO:0044455;mitochondrial membrane part;6.51555317198966e-20!GO:0006886;intracellular protein transport;1.30627786745597e-19!GO:0005746;mitochondrial respiratory chain;3.55979257044793e-19!GO:0015935;small ribosomal subunit;1.00947155523891e-18!GO:0005681;spliceosome;3.74901148490971e-17!GO:0015934;large ribosomal subunit;8.1748217588541e-17!GO:0015629;actin cytoskeleton;9.48857629279176e-17!GO:0031980;mitochondrial lumen;9.87453885651864e-17!GO:0005759;mitochondrial matrix;9.87453885651864e-17!GO:0005654;nucleoplasm;6.09592628941582e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.02676048335219e-15!GO:0003954;NADH dehydrogenase activity;1.02676048335219e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.02676048335219e-15!GO:0000166;nucleotide binding;7.43991850973963e-15!GO:0051641;cellular localization;7.57523855282333e-15!GO:0008134;transcription factor binding;1.01929057662706e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.58115425465431e-14!GO:0006512;ubiquitin cycle;1.60128304068499e-14!GO:0051649;establishment of cellular localization;2.5193355895113e-14!GO:0005783;endoplasmic reticulum;3.17082172262355e-14!GO:0022618;protein-RNA complex assembly;3.54411369703442e-14!GO:0048770;pigment granule;7.53747290034182e-14!GO:0042470;melanosome;7.53747290034182e-14!GO:0007517;muscle development;8.22017108010577e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.13467474982126e-13!GO:0042773;ATP synthesis coupled electron transport;1.13467474982126e-13!GO:0016874;ligase activity;1.32163896826898e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.32163896826898e-13!GO:0045271;respiratory chain complex I;1.32163896826898e-13!GO:0005747;mitochondrial respiratory chain complex I;1.32163896826898e-13!GO:0044449;contractile fiber part;1.54659280837767e-13!GO:0043292;contractile fiber;2.10133156961913e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.98379351316199e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.2442070778379e-13!GO:0044451;nucleoplasm part;4.30433212615948e-13!GO:0008135;translation factor activity, nucleic acid binding;9.81458547607752e-13!GO:0005761;mitochondrial ribosome;1.18225102668542e-12!GO:0000313;organellar ribosome;1.18225102668542e-12!GO:0003676;nucleic acid binding;1.46981932540629e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.23298127204801e-12!GO:0003779;actin binding;3.38670099173695e-12!GO:0051186;cofactor metabolic process;3.94520623043385e-12!GO:0006605;protein targeting;4.08293594302213e-12!GO:0016462;pyrophosphatase activity;6.04630386611041e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.1745121747595e-12!GO:0006457;protein folding;8.22843842032809e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;8.22843842032809e-12!GO:0017111;nucleoside-triphosphatase activity;8.77595881189974e-12!GO:0006259;DNA metabolic process;1.05682409348489e-11!GO:0008307;structural constituent of muscle;1.17486843226927e-11!GO:0012505;endomembrane system;1.7912805453807e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.11892996893713e-11!GO:0043412;biopolymer modification;5.16927787795024e-11!GO:0005794;Golgi apparatus;7.01306307253636e-11!GO:0006461;protein complex assembly;7.75335797297632e-11!GO:0005635;nuclear envelope;1.0507449120057e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;1.10270282521232e-10!GO:0000502;proteasome complex (sensu Eukaryota);1.10851643411649e-10!GO:0044265;cellular macromolecule catabolic process;1.48656954571041e-10!GO:0006511;ubiquitin-dependent protein catabolic process;1.50412710927226e-10!GO:0016192;vesicle-mediated transport;1.5932524030543e-10!GO:0019941;modification-dependent protein catabolic process;1.78874497800657e-10!GO:0043632;modification-dependent macromolecule catabolic process;1.78874497800657e-10!GO:0016070;RNA metabolic process;1.94074154412997e-10!GO:0006913;nucleocytoplasmic transport;1.97266817300034e-10!GO:0005730;nucleolus;2.02975878534351e-10!GO:0044257;cellular protein catabolic process;2.80297771968371e-10!GO:0032553;ribonucleotide binding;2.80297771968371e-10!GO:0032555;purine ribonucleotide binding;2.80297771968371e-10!GO:0030016;myofibril;2.96014298558609e-10!GO:0006464;protein modification process;3.08277636148131e-10!GO:0048523;negative regulation of cellular process;3.28549061648527e-10!GO:0031965;nuclear membrane;4.5915189294163e-10!GO:0048193;Golgi vesicle transport;5.68819819764963e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;6.73296469783366e-10!GO:0000375;RNA splicing, via transesterification reactions;6.73296469783366e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.73296469783366e-10!GO:0051169;nuclear transport;7.03730415715428e-10!GO:0050789;regulation of biological process;8.18430108764055e-10!GO:0008565;protein transporter activity;9.75512503057484e-10!GO:0043687;post-translational protein modification;1.3743322740144e-09!GO:0030029;actin filament-based process;1.62460172473417e-09!GO:0051082;unfolded protein binding;2.05690572845179e-09!GO:0017076;purine nucleotide binding;2.15467642576915e-09!GO:0030036;actin cytoskeleton organization and biogenesis;2.2709553931324e-09!GO:0006446;regulation of translational initiation;2.72307916040457e-09!GO:0017038;protein import;2.84525000661593e-09!GO:0006413;translational initiation;3.18378350295037e-09!GO:0044432;endoplasmic reticulum part;3.97828816653534e-09!GO:0003743;translation initiation factor activity;4.38461202381323e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;6.20764501800633e-09!GO:0050794;regulation of cellular process;7.70519468306462e-09!GO:0003712;transcription cofactor activity;7.85196437878549e-09!GO:0030017;sarcomere;9.12506921593036e-09!GO:0006732;coenzyme metabolic process;1.07355233815187e-08!GO:0030163;protein catabolic process;1.49673635745378e-08!GO:0043285;biopolymer catabolic process;1.74905446904792e-08!GO:0048519;negative regulation of biological process;1.90763839175777e-08!GO:0045333;cellular respiration;2.21427137489009e-08!GO:0009057;macromolecule catabolic process;2.61765333604446e-08!GO:0006323;DNA packaging;2.81477518175662e-08!GO:0044248;cellular catabolic process;3.6691736006098e-08!GO:0007010;cytoskeleton organization and biogenesis;5.24871566349679e-08!GO:0009060;aerobic respiration;5.24878496187004e-08!GO:0005793;ER-Golgi intermediate compartment;5.96598299701338e-08!GO:0015078;hydrogen ion transmembrane transporter activity;6.73231497376065e-08!GO:0031252;leading edge;6.81369084016791e-08!GO:0006366;transcription from RNA polymerase II promoter;7.18250367898108e-08!GO:0008639;small protein conjugating enzyme activity;7.24795290853129e-08!GO:0007049;cell cycle;7.40418754956545e-08!GO:0019829;cation-transporting ATPase activity;9.49844266793409e-08!GO:0004842;ubiquitin-protein ligase activity;1.09595062818532e-07!GO:0005524;ATP binding;1.13231131706709e-07!GO:0006163;purine nucleotide metabolic process;1.13233171121624e-07!GO:0009055;electron carrier activity;1.28917963455336e-07!GO:0032559;adenyl ribonucleotide binding;1.45482370278976e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.53840545462868e-07!GO:0044453;nuclear membrane part;1.61731362894297e-07!GO:0015980;energy derivation by oxidation of organic compounds;1.70884016473859e-07!GO:0005788;endoplasmic reticulum lumen;2.39872368889684e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.65443314717451e-07!GO:0009150;purine ribonucleotide metabolic process;2.65443314717451e-07!GO:0051276;chromosome organization and biogenesis;3.46337714536187e-07!GO:0019787;small conjugating protein ligase activity;5.82709885929708e-07!GO:0009259;ribonucleotide metabolic process;5.85367396865362e-07!GO:0006606;protein import into nucleus;7.76931639908968e-07!GO:0003012;muscle system process;7.82069689648062e-07!GO:0006936;muscle contraction;7.82069689648062e-07!GO:0030554;adenyl nucleotide binding;1.14452125424656e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.21777910399759e-06!GO:0051170;nuclear import;1.26998560089466e-06!GO:0016887;ATPase activity;1.33136534103756e-06!GO:0030120;vesicle coat;1.48427559356458e-06!GO:0030662;coated vesicle membrane;1.48427559356458e-06!GO:0042254;ribosome biogenesis and assembly;1.57053051859882e-06!GO:0051427;hormone receptor binding;1.89624069316379e-06!GO:0065007;biological regulation;1.94269181051515e-06!GO:0016604;nuclear body;2.05989827287243e-06!GO:0015986;ATP synthesis coupled proton transport;2.05989827287243e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.05989827287243e-06!GO:0005856;cytoskeleton;2.17639238732977e-06!GO:0006099;tricarboxylic acid cycle;2.40177447994899e-06!GO:0046356;acetyl-CoA catabolic process;2.40177447994899e-06!GO:0009141;nucleoside triphosphate metabolic process;2.40196837215483e-06!GO:0042623;ATPase activity, coupled;2.40196837215483e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.40196837215483e-06!GO:0046034;ATP metabolic process;2.40196837215483e-06!GO:0006793;phosphorus metabolic process;2.63801397585718e-06!GO:0006796;phosphate metabolic process;2.63801397585718e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.7482924530727e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.7482924530727e-06!GO:0006164;purine nucleotide biosynthetic process;2.7737815799227e-06!GO:0005583;fibrillar collagen;2.98870045477727e-06!GO:0014706;striated muscle development;3.14844005288992e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.23124782075731e-06!GO:0035257;nuclear hormone receptor binding;3.77767730840395e-06!GO:0030532;small nuclear ribonucleoprotein complex;3.77767730840395e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.89972523275498e-06!GO:0051188;cofactor biosynthetic process;4.23844601845415e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.96096148030963e-06!GO:0012501;programmed cell death;4.96425219745822e-06!GO:0065004;protein-DNA complex assembly;5.42634717163029e-06!GO:0048475;coated membrane;5.58881909705249e-06!GO:0030117;membrane coat;5.58881909705249e-06!GO:0006084;acetyl-CoA metabolic process;5.75022711118944e-06!GO:0007519;skeletal muscle development;5.99345060880735e-06!GO:0045259;proton-transporting ATP synthase complex;6.10938498378706e-06!GO:0009152;purine ribonucleotide biosynthetic process;6.60023093969087e-06!GO:0051246;regulation of protein metabolic process;6.89274995667706e-06!GO:0006333;chromatin assembly or disassembly;7.38784426263016e-06!GO:0005798;Golgi-associated vesicle;7.38784426263016e-06!GO:0006915;apoptosis;7.5384220300258e-06!GO:0044420;extracellular matrix part;8.73272992857036e-06!GO:0000785;chromatin;8.91128208937459e-06!GO:0016044;membrane organization and biogenesis;9.60431483270015e-06!GO:0009117;nucleotide metabolic process;9.76511929502397e-06!GO:0016310;phosphorylation;1.03261958121273e-05!GO:0009109;coenzyme catabolic process;1.11455877818716e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.13824569119983e-05!GO:0000151;ubiquitin ligase complex;1.22828679147699e-05!GO:0016607;nuclear speck;1.24181004431007e-05!GO:0006916;anti-apoptosis;1.37154411171153e-05!GO:0065002;intracellular protein transport across a membrane;1.38949264425506e-05!GO:0009260;ribonucleotide biosynthetic process;1.46510021615691e-05!GO:0005643;nuclear pore;1.48942095631633e-05!GO:0051187;cofactor catabolic process;1.49686416547838e-05!GO:0016881;acid-amino acid ligase activity;1.49960436033696e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.66638093526938e-05!GO:0006334;nucleosome assembly;1.77160948618739e-05!GO:0005581;collagen;1.97860020938639e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.0287074758575e-05!GO:0004812;aminoacyl-tRNA ligase activity;2.0287074758575e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.0287074758575e-05!GO:0005523;tropomyosin binding;2.12955472425909e-05!GO:0006941;striated muscle contraction;2.32139601226529e-05!GO:0022402;cell cycle process;2.3620789679352e-05!GO:0045786;negative regulation of progression through cell cycle;2.38228955480571e-05!GO:0016049;cell growth;2.98432437112569e-05!GO:0031988;membrane-bound vesicle;2.9980272600788e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.02251941706511e-05!GO:0051128;regulation of cellular component organization and biogenesis;3.05210214632407e-05!GO:0005865;striated muscle thin filament;3.25958661054011e-05!GO:0008219;cell death;3.45564334377988e-05!GO:0016265;death;3.45564334377988e-05!GO:0008361;regulation of cell size;3.4713136914879e-05!GO:0003924;GTPase activity;3.4757124492889e-05!GO:0016564;transcription repressor activity;3.56810916024573e-05!GO:0000245;spliceosome assembly;3.6313841808729e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.73462886985814e-05!GO:0009142;nucleoside triphosphate biosynthetic process;3.82728175199647e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.82728175199647e-05!GO:0006754;ATP biosynthetic process;3.96513347790437e-05!GO:0006753;nucleoside phosphate metabolic process;3.96513347790437e-05!GO:0032446;protein modification by small protein conjugation;4.03300142165929e-05!GO:0043069;negative regulation of programmed cell death;4.11817734177264e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.38743347146715e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.38743347146715e-05!GO:0003713;transcription coactivator activity;4.6371530409363e-05!GO:0043066;negative regulation of apoptosis;4.80415633364595e-05!GO:0005789;endoplasmic reticulum membrane;4.80415633364595e-05!GO:0003697;single-stranded DNA binding;5.28847647742396e-05!GO:0043038;amino acid activation;5.79166803463083e-05!GO:0006418;tRNA aminoacylation for protein translation;5.79166803463083e-05!GO:0043039;tRNA aminoacylation;5.79166803463083e-05!GO:0031497;chromatin assembly;5.79166803463083e-05!GO:0051726;regulation of cell cycle;6.34409285870528e-05!GO:0000074;regulation of progression through cell cycle;6.56278323484636e-05!GO:0016567;protein ubiquitination;6.90141559444385e-05!GO:0043566;structure-specific DNA binding;7.69192110876957e-05!GO:0030027;lamellipodium;7.74989278884944e-05!GO:0006091;generation of precursor metabolites and energy;7.77303606066384e-05!GO:0005525;GTP binding;8.29226876742011e-05!GO:0005694;chromosome;8.34439777160241e-05!GO:0005762;mitochondrial large ribosomal subunit;8.63340504015899e-05!GO:0000315;organellar large ribosomal subunit;8.63340504015899e-05!GO:0031982;vesicle;9.18505442939661e-05!GO:0016563;transcription activator activity;9.48372103348813e-05!GO:0019899;enzyme binding;0.000108217667459909!GO:0016568;chromatin modification;0.000108536319743167!GO:0001558;regulation of cell growth;0.000137430961416309!GO:0000314;organellar small ribosomal subunit;0.000139209915230467!GO:0005763;mitochondrial small ribosomal subunit;0.000139209915230467!GO:0031410;cytoplasmic vesicle;0.000147395173636323!GO:0035258;steroid hormone receptor binding;0.000150093257179746!GO:0016529;sarcoplasmic reticulum;0.000153465619542944!GO:0016528;sarcoplasm;0.000153465619542944!GO:0046930;pore complex;0.000158127586999029!GO:0007264;small GTPase mediated signal transduction;0.000165000149530431!GO:0009056;catabolic process;0.000185341749428293!GO:0019843;rRNA binding;0.000206259764775806!GO:0050657;nucleic acid transport;0.000208883780300154!GO:0051236;establishment of RNA localization;0.000208883780300154!GO:0050658;RNA transport;0.000208883780300154!GO:0051789;response to protein stimulus;0.000208883780300154!GO:0006986;response to unfolded protein;0.000208883780300154!GO:0005839;proteasome core complex (sensu Eukaryota);0.000215926834017005!GO:0016481;negative regulation of transcription;0.000223697198479805!GO:0007005;mitochondrion organization and biogenesis;0.000231259288670718!GO:0009108;coenzyme biosynthetic process;0.000241574854072712!GO:0042802;identical protein binding;0.000247998772884192!GO:0005667;transcription factor complex;0.000249824638870092!GO:0006403;RNA localization;0.000262595039022875!GO:0009892;negative regulation of metabolic process;0.000281639622354239!GO:0001726;ruffle;0.000305498802493022!GO:0031324;negative regulation of cellular metabolic process;0.000317184185269845!GO:0003714;transcription corepressor activity;0.000346907705186997!GO:0006399;tRNA metabolic process;0.000346907705186997!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00038117525765081!GO:0043284;biopolymer biosynthetic process;0.000381881744542514!GO:0006897;endocytosis;0.000404744871801943!GO:0010324;membrane invagination;0.000404744871801943!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.000407846962739882!GO:0015002;heme-copper terminal oxidase activity;0.000407846962739882!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.000407846962739882!GO:0004129;cytochrome-c oxidase activity;0.000407846962739882!GO:0044431;Golgi apparatus part;0.000426095254486111!GO:0043623;cellular protein complex assembly;0.000473351979180211!GO:0007265;Ras protein signal transduction;0.000504571312197261!GO:0005912;adherens junction;0.000525724237626531!GO:0032561;guanyl ribonucleotide binding;0.000567897009408353!GO:0019001;guanyl nucleotide binding;0.000567897009408353!GO:0006613;cotranslational protein targeting to membrane;0.000620190862947859!GO:0006364;rRNA processing;0.000631202010617146!GO:0016853;isomerase activity;0.000665520701273014!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000707915607258123!GO:0005768;endosome;0.000707915607258123!GO:0048471;perinuclear region of cytoplasm;0.000753700925654268!GO:0005859;muscle myosin complex;0.000784654956563873!GO:0004386;helicase activity;0.000799619771284623!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000804813217693235!GO:0044427;chromosomal part;0.000819951912151297!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000822999772695198!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000822999772695198!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000822999772695198!GO:0042981;regulation of apoptosis;0.000846804251767257!GO:0005791;rough endoplasmic reticulum;0.000851087655552381!GO:0003746;translation elongation factor activity;0.000915210294683222!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000919524036330233!GO:0000278;mitotic cell cycle;0.000935181974126158!GO:0004576;oligosaccharyl transferase activity;0.000936956940516119!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000959575309554444!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00101641450360307!GO:0045941;positive regulation of transcription;0.00102369835930204!GO:0015630;microtubule cytoskeleton;0.00103724291347649!GO:0006414;translational elongation;0.00106389788603978!GO:0031589;cell-substrate adhesion;0.00107374803993723!GO:0030133;transport vesicle;0.00112997486686695!GO:0008250;oligosaccharyl transferase complex;0.00114005316241855!GO:0043067;regulation of programmed cell death;0.00114534455713612!GO:0004298;threonine endopeptidase activity;0.00116983853900435!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00118132506813631!GO:0000786;nucleosome;0.00121458378208318!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00121627923147103!GO:0005048;signal sequence binding;0.00123961459176633!GO:0030867;rough endoplasmic reticulum membrane;0.00127530038767834!GO:0030521;androgen receptor signaling pathway;0.00128290146410558!GO:0006752;group transfer coenzyme metabolic process;0.00132891784238654!GO:0016072;rRNA metabolic process;0.00150402597798512!GO:0006260;DNA replication;0.00166489287464029!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00177627041790756!GO:0048522;positive regulation of cellular process;0.00181225434039977!GO:0044262;cellular carbohydrate metabolic process;0.00187006156740948!GO:0000902;cell morphogenesis;0.00187385821195855!GO:0032989;cellular structure morphogenesis;0.00187385821195855!GO:0005905;coated pit;0.00189924223425079!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00194676186199588!GO:0006974;response to DNA damage stimulus;0.00203350271661667!GO:0005637;nuclear inner membrane;0.00206547099161372!GO:0003724;RNA helicase activity;0.00213374164148758!GO:0008026;ATP-dependent helicase activity;0.00214110206222724!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00217161717651092!GO:0005083;small GTPase regulator activity;0.00220907188205478!GO:0007160;cell-matrix adhesion;0.00222523785460837!GO:0051028;mRNA transport;0.00224516204643589!GO:0016197;endosome transport;0.00225894513306584!GO:0009165;nucleotide biosynthetic process;0.00233307236660615!GO:0008154;actin polymerization and/or depolymerization;0.00250194468292669!GO:0045892;negative regulation of transcription, DNA-dependent;0.0025588793080243!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00264952399868572!GO:0022890;inorganic cation transmembrane transporter activity;0.00265075410641421!GO:0015631;tubulin binding;0.00265251128055347!GO:0030518;steroid hormone receptor signaling pathway;0.00277551118088912!GO:0019222;regulation of metabolic process;0.00286700618708582!GO:0030663;COPI coated vesicle membrane;0.00292412418518225!GO:0030126;COPI vesicle coat;0.00292412418518225!GO:0051920;peroxiredoxin activity;0.00295704928874405!GO:0005773;vacuole;0.00300769211077548!GO:0030031;cell projection biogenesis;0.00303112763313036!GO:0005813;centrosome;0.00308460486191536!GO:0030132;clathrin coat of coated pit;0.00309077321241827!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00330353018135235!GO:0033116;ER-Golgi intermediate compartment membrane;0.00332248851235101!GO:0016460;myosin II complex;0.00342242849039898!GO:0016859;cis-trans isomerase activity;0.00345923146685944!GO:0007266;Rho protein signal transduction;0.00345923146685944!GO:0003899;DNA-directed RNA polymerase activity;0.00357038258159689!GO:0001725;stress fiber;0.00370290631726039!GO:0032432;actin filament bundle;0.00370290631726039!GO:0043681;protein import into mitochondrion;0.00375586686298476!GO:0030018;Z disc;0.00383220706388591!GO:0005770;late endosome;0.0039728862776881!GO:0045893;positive regulation of transcription, DNA-dependent;0.00407932159809764!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00412164729913877!GO:0015399;primary active transmembrane transporter activity;0.00412164729913877!GO:0048741;skeletal muscle fiber development;0.00418825683914337!GO:0048747;muscle fiber development;0.00418825683914337!GO:0000323;lytic vacuole;0.00422746914210489!GO:0005764;lysosome;0.00422746914210489!GO:0006818;hydrogen transport;0.00426725781697356!GO:0015992;proton transport;0.00436292196975269!GO:0030137;COPI-coated vesicle;0.00458797150190726!GO:0051087;chaperone binding;0.00462201762142723!GO:0050681;androgen receptor binding;0.0046289526067281!GO:0031674;I band;0.00463404967750513!GO:0043488;regulation of mRNA stability;0.00483210368444497!GO:0043487;regulation of RNA stability;0.00483210368444497!GO:0040008;regulation of growth;0.00488724626939456!GO:0008139;nuclear localization sequence binding;0.00499291550660083!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00502499258422741!GO:0033043;regulation of organelle organization and biogenesis;0.00502499258422741!GO:0044440;endosomal part;0.00515054376995261!GO:0010008;endosome membrane;0.00515054376995261!GO:0045445;myoblast differentiation;0.00519492148214333!GO:0048518;positive regulation of biological process;0.00554252712082547!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00558157850339702!GO:0051287;NAD binding;0.00583484364731489!GO:0051252;regulation of RNA metabolic process;0.005975175807668!GO:0030134;ER to Golgi transport vesicle;0.0059858629739927!GO:0005924;cell-substrate adherens junction;0.00630257048617603!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.007085876595!GO:0043021;ribonucleoprotein binding;0.00713140918029604!GO:0005815;microtubule organizing center;0.00713299376326679!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00713299376326679!GO:0031032;actomyosin structure organization and biogenesis;0.00720309899221451!GO:0006942;regulation of striated muscle contraction;0.00720711270990974!GO:0016779;nucleotidyltransferase activity;0.00733735217841811!GO:0017166;vinculin binding;0.00751403605975479!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00803932134045456!GO:0016491;oxidoreductase activity;0.00804402273574528!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00833247492049703!GO:0051168;nuclear export;0.00844911433051205!GO:0046314;phosphocreatine biosynthetic process;0.0085658859066447!GO:0006603;phosphocreatine metabolic process;0.0085658859066447!GO:0006891;intra-Golgi vesicle-mediated transport;0.00868443755767737!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00879224506350202!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00879224506350202!GO:0008654;phospholipid biosynthetic process;0.00879745821118446!GO:0006509;membrane protein ectodomain proteolysis;0.00901697818038864!GO:0033619;membrane protein proteolysis;0.00901697818038864!GO:0030658;transport vesicle membrane;0.00903702826522225!GO:0030118;clathrin coat;0.00933773721271581!GO:0030055;cell-matrix junction;0.0097457464397481!GO:0005741;mitochondrial outer membrane;0.0105306955725438!GO:0031968;organelle outer membrane;0.0105371602898793!GO:0018196;peptidyl-asparagine modification;0.0105371602898793!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0105371602898793!GO:0051329;interphase of mitotic cell cycle;0.0106778631529774!GO:0007006;mitochondrial membrane organization and biogenesis;0.0109061874902268!GO:0030127;COPII vesicle coat;0.0109615431816405!GO:0012507;ER to Golgi transport vesicle membrane;0.0109615431816405!GO:0030695;GTPase regulator activity;0.0109770203700872!GO:0000059;protein import into nucleus, docking;0.0110694446950181!GO:0009719;response to endogenous stimulus;0.011307400868059!GO:0019867;outer membrane;0.0113303435718716!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0114340788677403!GO:0006402;mRNA catabolic process;0.0114659691488231!GO:0030041;actin filament polymerization;0.011721492706001!GO:0000139;Golgi membrane;0.011815439187926!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0120017125745633!GO:0006595;polyamine metabolic process;0.0121795407781394!GO:0033018;sarcoplasmic reticulum lumen;0.0122634028877089!GO:0005885;Arp2/3 protein complex;0.0124168401631186!GO:0005100;Rho GTPase activator activity;0.0124168401631186!GO:0006839;mitochondrial transport;0.0124330069280196!GO:0006281;DNA repair;0.0124500514975435!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0129796436794971!GO:0007167;enzyme linked receptor protein signaling pathway;0.0132612413383159!GO:0048041;focal adhesion formation;0.0135909258927099!GO:0003711;transcription elongation regulator activity;0.0136491689041148!GO:0005769;early endosome;0.013690458216095!GO:0033017;sarcoplasmic reticulum membrane;0.0140764523212035!GO:0048468;cell development;0.0144598923530869!GO:0005861;troponin complex;0.0144730051677368!GO:0016363;nuclear matrix;0.0150907047091416!GO:0030522;intracellular receptor-mediated signaling pathway;0.01513426817588!GO:0005586;collagen type III;0.0155842453517836!GO:0003690;double-stranded DNA binding;0.0156957616112172!GO:0006979;response to oxidative stress;0.015843493613739!GO:0001527;microfibril;0.0159885177737588!GO:0008286;insulin receptor signaling pathway;0.0163442455395228!GO:0008186;RNA-dependent ATPase activity;0.0164879847617482!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0166525261693061!GO:0005862;muscle thin filament tropomyosin;0.0167633714407356!GO:0003702;RNA polymerase II transcription factor activity;0.0167837171154378!GO:0046983;protein dimerization activity;0.0174424451588062!GO:0004177;aminopeptidase activity;0.0177065585584478!GO:0030660;Golgi-associated vesicle membrane;0.0177840839737462!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.018019395133425!GO:0003729;mRNA binding;0.0189432933052333!GO:0030832;regulation of actin filament length;0.0190455225293896!GO:0016584;nucleosome positioning;0.0193014978422701!GO:0006937;regulation of muscle contraction;0.0193014978422701!GO:0016740;transferase activity;0.0195128496854216!GO:0045098;type III intermediate filament;0.0195386280987147!GO:0042692;muscle cell differentiation;0.0198243977480473!GO:0043492;ATPase activity, coupled to movement of substances;0.0198243977480473!GO:0051539;4 iron, 4 sulfur cluster binding;0.0198243977480473!GO:0051098;regulation of binding;0.0200515390832067!GO:0006778;porphyrin metabolic process;0.0200515390832067!GO:0033013;tetrapyrrole metabolic process;0.0200515390832067!GO:0022603;regulation of anatomical structure morphogenesis;0.0208923897024212!GO:0008360;regulation of cell shape;0.0208923897024212!GO:0022604;regulation of cell morphogenesis;0.0208923897024212!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0215760236697107!GO:0048487;beta-tubulin binding;0.0217173109418132!GO:0008180;signalosome;0.0217173109418132!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0220509254940773!GO:0006779;porphyrin biosynthetic process;0.0220509254940773!GO:0033014;tetrapyrrole biosynthetic process;0.0220509254940773!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0221974624427602!GO:0005869;dynactin complex;0.0222615726988512!GO:0007050;cell cycle arrest;0.0222615726988512!GO:0051129;negative regulation of cellular component organization and biogenesis;0.022563639142495!GO:0032535;regulation of cellular component size;0.022563639142495!GO:0005977;glycogen metabolic process;0.0238086695313314!GO:0017022;myosin binding;0.0241162646792758!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0249643857020008!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0254494136471286!GO:0009893;positive regulation of metabolic process;0.0259383728147807!GO:0031072;heat shock protein binding;0.0260318436748711!GO:0009966;regulation of signal transduction;0.0267005958168572!GO:0051325;interphase;0.026815114883375!GO:0022415;viral reproductive process;0.0274236888968615!GO:0005925;focal adhesion;0.0276987844826818!GO:0005684;U2-dependent spliceosome;0.0278897972375841!GO:0019904;protein domain specific binding;0.0281642339739918!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0284508688388815!GO:0033673;negative regulation of kinase activity;0.0287010007479503!GO:0006469;negative regulation of protein kinase activity;0.0287010007479503!GO:0008017;microtubule binding;0.0287730402438448!GO:0051540;metal cluster binding;0.0287730402438448!GO:0051536;iron-sulfur cluster binding;0.0287730402438448!GO:0006733;oxidoreduction coenzyme metabolic process;0.028812559105214!GO:0008047;enzyme activator activity;0.0288592410647097!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.0291492326290907!GO:0031272;regulation of pseudopodium formation;0.0300260922718613!GO:0031269;pseudopodium formation;0.0300260922718613!GO:0031344;regulation of cell projection organization and biogenesis;0.0300260922718613!GO:0031268;pseudopodium organization and biogenesis;0.0300260922718613!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0300260922718613!GO:0031274;positive regulation of pseudopodium formation;0.0300260922718613!GO:0008147;structural constituent of bone;0.03010809435651!GO:0005518;collagen binding;0.0312605582214852!GO:0006607;NLS-bearing substrate import into nucleus;0.032677664106593!GO:0048500;signal recognition particle;0.0328765111038301!GO:0006950;response to stress;0.0337506225680999!GO:0005832;chaperonin-containing T-complex;0.0355997089218826!GO:0045947;negative regulation of translational initiation;0.0356813770467577!GO:0005605;basal lamina;0.0357550544534014!GO:0042396;phosphagen biosynthetic process;0.0368951887420292!GO:0006599;phosphagen metabolic process;0.0368951887420292!GO:0006650;glycerophospholipid metabolic process;0.037022229476301!GO:0004004;ATP-dependent RNA helicase activity;0.0375366621240488!GO:0030199;collagen fibril organization;0.0375709721992349!GO:0042168;heme metabolic process;0.0377774176232947!GO:0006626;protein targeting to mitochondrion;0.0382689806635078!GO:0005584;collagen type I;0.0385088322148671!GO:0031143;pseudopodium;0.0385088322148671!GO:0051101;regulation of DNA binding;0.0392307415930412!GO:0006740;NADPH regeneration;0.0399732284233015!GO:0006098;pentose-phosphate shunt;0.0399732284233015!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0401570692080064!GO:0008287;protein serine/threonine phosphatase complex;0.0404980286359462!GO:0042805;actinin binding;0.0405112575912867!GO:0006783;heme biosynthetic process;0.0405557970807552!GO:0008320;protein transmembrane transporter activity;0.0414156059101824!GO:0005874;microtubule;0.0432130764050189!GO:0030880;RNA polymerase complex;0.0441315798087056!GO:0006611;protein export from nucleus;0.0445139436087422!GO:0030911;TPR domain binding;0.0445463325311682!GO:0012506;vesicle membrane;0.0459845846326643!GO:0030218;erythrocyte differentiation;0.0468089256624128!GO:0051270;regulation of cell motility;0.047113943442678!GO:0030176;integral to endoplasmic reticulum membrane;0.047202049154211!GO:0022403;cell cycle phase;0.0472362769846421!GO:0045792;negative regulation of cell size;0.047271237883246!GO:0031628;opioid receptor binding;0.047993767285297!GO:0031852;mu-type opioid receptor binding;0.047993767285297!GO:0006635;fatty acid beta-oxidation;0.047993767285297!GO:0015036;disulfide oxidoreductase activity;0.0485675555865771!GO:0006073;glucan metabolic process;0.0489375217558421!GO:0031901;early endosome membrane;0.0493118655922938!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0493118655922938!GO:0010257;NADH dehydrogenase complex assembly;0.0493118655922938!GO:0033108;mitochondrial respiratory chain complex assembly;0.0493118655922938!GO:0000792;heterochromatin;0.0495866103614798!GO:0051348;negative regulation of transferase activity;0.049656675011754!GO:0030659;cytoplasmic vesicle membrane;0.049814981888607!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0499310964350204 | |||
|sample_id=10066 | |sample_id=10066 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=skeletal muscle | |sample_tissue=skeletal muscle | ||
|top_motifs=MEF2{A,B,C,D}:5.31938076627;NR5A1,2:4.02092255441;TAL1_TCF{3,4,12}:3.95243441826;SPZ1:3.52453105331;NR6A1:3.38879902437;GLI1..3:3.29189226393;ESR1:3.11798671485;NR1H4:3.11727426544;GCM1,2:2.69136655759;SRF:2.60738184913;TFAP4:2.48619882124;NHLH1,2:2.4359030741;IKZF2:2.37240049663;NANOG{mouse}:2.34999070815;SOX5:2.29875083303;TOPORS:2.27781991346;HOX{A4,D4}:2.27769478223;KLF4:2.21461329182;TBP:2.20080245294;MYBL2:2.17540875864;ZIC1..3:2.16692402212;SMAD1..7,9:2.06842014619;POU3F1..4:2.03947069085;FOXL1:1.95616717403;LHX3,4:1.85442970941;ZNF384:1.84028835932;TGIF1:1.81063479524;LMO2:1.7657816441;TLX2:1.64201888381;MYOD1:1.64136453613;GTF2A1,2:1.6284038638;HIC1:1.60758001326;PATZ1:1.52679825661;STAT5{A,B}:1.44560932157;MED-1{core}:1.43914297675;RXRA_VDR{dimer}:1.43432036249;TFAP2{A,C}:1.41309015246;GFI1B:1.39966424195;IKZF1:1.39420706568;MZF1:1.39042805924;YY1:1.36702727671;MAZ:1.33734755968;POU1F1:1.32419359051;MAFB:1.32312788859;UFEwm:1.23808375897;PRDM1:1.23501794642;CUX2:1.16127130984;ZNF423:1.15671947096;TLX1..3_NFIC{dimer}:1.14680867497;NFATC1..3:1.10319688357;TFAP2B:1.07066412711;ZNF238:1.06618183429;FOXP3:1.06436312169;EGR1..3:1.06365822474;HOX{A5,B5}:1.06016788024;ALX1:1.03712377726;TEAD1:1.02453647829;BPTF:1.00294897528;NFE2L1:0.994877985214;EVI1:0.968874242559;NKX3-1:0.966016546682;RXR{A,B,G}:0.965143544278;PAX5:0.964603037439;MYFfamily:0.951157664693;GATA4:0.919592707054;RREB1:0.919178764962;MTF1:0.91665196584;GFI1:0.91169814477;SOX17:0.888281922475;PAX6:0.880369867591;GTF2I:0.879994636559;POU6F1:0.86024636047;XBP1:0.850600268629;REST:0.817636760751;NKX2-3_NKX2-5:0.813908550268;POU5F1:0.772961982316;HES1:0.722763607062;ATF2:0.708756930522;PBX1:0.671838038755;SOX{8,9,10}:0.601102226016;TFCP2:0.585894865427;HAND1,2:0.553041887285;ESRRA:0.520264596618;PAX3,7:0.495690528195;TBX4,5:0.464790455145;HMX1:0.440939703994;SP1:0.425128877705;NKX6-1,2:0.398390205961;NFIX:0.385164419633;MTE{core}:0.379599963778;AR:0.379224652221;RFX2..5_RFXANK_RFXAP:0.360120616441;ZNF148:0.348992761941;ALX4:0.344698585455;RORA:0.310738427398;RBPJ:0.282164361015;LEF1_TCF7_TCF7L1,2:0.280727794999;HOX{A6,A7,B6,B7}:0.256039036175;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.221448133636;HOXA9_MEIS1:0.191352632776;FOXP1:0.187763730914;NKX2-1,4:0.174682656028;SNAI1..3:0.172758480172;BREu{core}:0.1668989287;GATA6:0.120033247164;ZFP161:0.10272322036;ARID5B:0.057266360771;STAT2,4,6:0.0129386503241;EP300:0.0106046534334;FOXO1,3,4:-0.0187993064682;SOX2:-0.0627091626157;ZNF143:-0.0631483170548;IRF7:-0.0741405882519;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.075186667638;PAX2:-0.0903038272677;TEF:-0.123886645525;EN1,2:-0.126985680287;CDX1,2,4:-0.151411562945;HNF4A_NR2F1,2:-0.157909451336;NANOG:-0.168009403846;HMGA1,2:-0.180318941473;NR3C1:-0.189031060002;AIRE:-0.199892971072;SPIB:-0.258041601594;E2F1..5:-0.26196526837;XCPE1{core}:-0.266721354638;PITX1..3:-0.284454703695;ZBTB6:-0.287683066406;SPI1:-0.338556961555;HNF1A:-0.398668820543;FOXQ1:-0.405178777736;FOXA2:-0.417962287328;FOXM1:-0.422181950342;EBF1:-0.425162244267;PDX1:-0.438591390864;ETS1,2:-0.480285775016;JUN:-0.513736497602;TP53:-0.531699941699;NFKB1_REL_RELA:-0.547187723226;NKX2-2,8:-0.560251522071;PAX1,9:-0.566434073362;CRX:-0.576150383745;HSF1,2:-0.585628527854;ATF6:-0.587927504276;OCT4_SOX2{dimer}:-0.588256130734;NFIL3:-0.596425977687;SREBF1,2:-0.597335937755;AHR_ARNT_ARNT2:-0.627908440224;FOX{F1,F2,J1}:-0.628945962425;ATF4:-0.64752168744;PAX8:-0.672572390598;GZF1:-0.67417018711;HLF:-0.679115459064;ONECUT1,2:-0.691079297649;DMAP1_NCOR{1,2}_SMARC:-0.693327452635;ZBTB16:-0.695207417327;ZEB1:-0.700780826896;NFY{A,B,C}:-0.738519225252;RFX1:-0.749322844053;FOSL2:-0.750165130923;VSX1,2:-0.756859671225;FOXD3:-0.769698416828;RUNX1..3:-0.78601889381;TFDP1:-0.805421632448;IRF1,2:-0.83606966053;FOX{D1,D2}:-0.870561181259;NKX3-2:-0.87489455495;PPARG:-0.876815253934;NRF1:-0.905187496696;FOS_FOS{B,L1}_JUN{B,D}:-0.933127915369;NFE2L2:-0.936696544006;POU2F1..3:-0.974529706166;ELF1,2,4:-0.981505598033;PAX4:-0.984944216812;BACH2:-0.995994472426;DBP:-1.03880559826;STAT1,3:-1.04786296583;HBP1_HMGB_SSRP1_UBTF:-1.07992401039;NFE2:-1.14714774342;HIF1A:-1.23289287884;ATF5_CREB3:-1.24989263898;CREB1:-1.25191417831;bHLH_family:-1.26153618038;FOX{I1,J2}:-1.26501385789;CEBPA,B_DDIT3:-1.28691184265;FOXN1:-1.29006572795;CDC5L:-1.33238180374;MYB:-1.40505182967;T:-1.40598628193;PRRX1,2:-1.53953258831;ELK1,4_GABP{A,B1}:-1.56917564086;ADNP_IRX_SIX_ZHX:-1.94872909244 | |top_motifs=MEF2{A,B,C,D}:5.31938076627;NR5A1,2:4.02092255441;TAL1_TCF{3,4,12}:3.95243441826;SPZ1:3.52453105331;NR6A1:3.38879902437;GLI1..3:3.29189226393;ESR1:3.11798671485;NR1H4:3.11727426544;GCM1,2:2.69136655759;SRF:2.60738184913;TFAP4:2.48619882124;NHLH1,2:2.4359030741;IKZF2:2.37240049663;NANOG{mouse}:2.34999070815;SOX5:2.29875083303;TOPORS:2.27781991346;HOX{A4,D4}:2.27769478223;KLF4:2.21461329182;TBP:2.20080245294;MYBL2:2.17540875864;ZIC1..3:2.16692402212;SMAD1..7,9:2.06842014619;POU3F1..4:2.03947069085;FOXL1:1.95616717403;LHX3,4:1.85442970941;ZNF384:1.84028835932;TGIF1:1.81063479524;LMO2:1.7657816441;TLX2:1.64201888381;MYOD1:1.64136453613;GTF2A1,2:1.6284038638;HIC1:1.60758001326;PATZ1:1.52679825661;STAT5{A,B}:1.44560932157;MED-1{core}:1.43914297675;RXRA_VDR{dimer}:1.43432036249;TFAP2{A,C}:1.41309015246;GFI1B:1.39966424195;IKZF1:1.39420706568;MZF1:1.39042805924;YY1:1.36702727671;MAZ:1.33734755968;POU1F1:1.32419359051;MAFB:1.32312788859;UFEwm:1.23808375897;PRDM1:1.23501794642;CUX2:1.16127130984;ZNF423:1.15671947096;TLX1..3_NFIC{dimer}:1.14680867497;NFATC1..3:1.10319688357;TFAP2B:1.07066412711;ZNF238:1.06618183429;FOXP3:1.06436312169;EGR1..3:1.06365822474;HOX{A5,B5}:1.06016788024;ALX1:1.03712377726;TEAD1:1.02453647829;BPTF:1.00294897528;NFE2L1:0.994877985214;EVI1:0.968874242559;NKX3-1:0.966016546682;RXR{A,B,G}:0.965143544278;PAX5:0.964603037439;MYFfamily:0.951157664693;GATA4:0.919592707054;RREB1:0.919178764962;MTF1:0.91665196584;GFI1:0.91169814477;SOX17:0.888281922475;PAX6:0.880369867591;GTF2I:0.879994636559;POU6F1:0.86024636047;XBP1:0.850600268629;REST:0.817636760751;NKX2-3_NKX2-5:0.813908550268;POU5F1:0.772961982316;HES1:0.722763607062;ATF2:0.708756930522;PBX1:0.671838038755;SOX{8,9,10}:0.601102226016;TFCP2:0.585894865427;HAND1,2:0.553041887285;ESRRA:0.520264596618;PAX3,7:0.495690528195;TBX4,5:0.464790455145;HMX1:0.440939703994;SP1:0.425128877705;NKX6-1,2:0.398390205961;NFIX:0.385164419633;MTE{core}:0.379599963778;AR:0.379224652221;RFX2..5_RFXANK_RFXAP:0.360120616441;ZNF148:0.348992761941;ALX4:0.344698585455;RORA:0.310738427398;RBPJ:0.282164361015;LEF1_TCF7_TCF7L1,2:0.280727794999;HOX{A6,A7,B6,B7}:0.256039036175;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.221448133636;HOXA9_MEIS1:0.191352632776;FOXP1:0.187763730914;NKX2-1,4:0.174682656028;SNAI1..3:0.172758480172;BREu{core}:0.1668989287;GATA6:0.120033247164;ZFP161:0.10272322036;ARID5B:0.057266360771;STAT2,4,6:0.0129386503241;EP300:0.0106046534334;FOXO1,3,4:-0.0187993064682;SOX2:-0.0627091626157;ZNF143:-0.0631483170548;IRF7:-0.0741405882519;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.075186667638;PAX2:-0.0903038272677;TEF:-0.123886645525;EN1,2:-0.126985680287;CDX1,2,4:-0.151411562945;HNF4A_NR2F1,2:-0.157909451336;NANOG:-0.168009403846;HMGA1,2:-0.180318941473;NR3C1:-0.189031060002;AIRE:-0.199892971072;SPIB:-0.258041601594;E2F1..5:-0.26196526837;XCPE1{core}:-0.266721354638;PITX1..3:-0.284454703695;ZBTB6:-0.287683066406;SPI1:-0.338556961555;HNF1A:-0.398668820543;FOXQ1:-0.405178777736;FOXA2:-0.417962287328;FOXM1:-0.422181950342;EBF1:-0.425162244267;PDX1:-0.438591390864;ETS1,2:-0.480285775016;JUN:-0.513736497602;TP53:-0.531699941699;NFKB1_REL_RELA:-0.547187723226;NKX2-2,8:-0.560251522071;PAX1,9:-0.566434073362;CRX:-0.576150383745;HSF1,2:-0.585628527854;ATF6:-0.587927504276;OCT4_SOX2{dimer}:-0.588256130734;NFIL3:-0.596425977687;SREBF1,2:-0.597335937755;AHR_ARNT_ARNT2:-0.627908440224;FOX{F1,F2,J1}:-0.628945962425;ATF4:-0.64752168744;PAX8:-0.672572390598;GZF1:-0.67417018711;HLF:-0.679115459064;ONECUT1,2:-0.691079297649;DMAP1_NCOR{1,2}_SMARC:-0.693327452635;ZBTB16:-0.695207417327;ZEB1:-0.700780826896;NFY{A,B,C}:-0.738519225252;RFX1:-0.749322844053;FOSL2:-0.750165130923;VSX1,2:-0.756859671225;FOXD3:-0.769698416828;RUNX1..3:-0.78601889381;TFDP1:-0.805421632448;IRF1,2:-0.83606966053;FOX{D1,D2}:-0.870561181259;NKX3-2:-0.87489455495;PPARG:-0.876815253934;NRF1:-0.905187496696;FOS_FOS{B,L1}_JUN{B,D}:-0.933127915369;NFE2L2:-0.936696544006;POU2F1..3:-0.974529706166;ELF1,2,4:-0.981505598033;PAX4:-0.984944216812;BACH2:-0.995994472426;DBP:-1.03880559826;STAT1,3:-1.04786296583;HBP1_HMGB_SSRP1_UBTF:-1.07992401039;NFE2:-1.14714774342;HIF1A:-1.23289287884;ATF5_CREB3:-1.24989263898;CREB1:-1.25191417831;bHLH_family:-1.26153618038;FOX{I1,J2}:-1.26501385789;CEBPA,B_DDIT3:-1.28691184265;FOXN1:-1.29006572795;CDC5L:-1.33238180374;MYB:-1.40505182967;T:-1.40598628193;PRRX1,2:-1.53953258831;ELK1,4_GABP{A,B1}:-1.56917564086;ADNP_IRX_SIX_ZHX:-1.94872909244 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10066-101I3;search_select_hide=table117:FF:10066-101I3 | |||
}} | }} | ||
Latest revision as of 12:19, 3 June 2020
| Name: | skeletal muscle, fetal, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11776 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11776
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11776
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.895 |
| 10 | 10 | 0.19 |
| 100 | 100 | 0.583 |
| 101 | 101 | 0.375 |
| 102 | 102 | 0.565 |
| 103 | 103 | 0.271 |
| 104 | 104 | 0.953 |
| 105 | 105 | 0.883 |
| 106 | 106 | 0.272 |
| 107 | 107 | 0.0389 |
| 108 | 108 | 0.073 |
| 109 | 109 | 0.0451 |
| 11 | 11 | 0.637 |
| 110 | 110 | 0.492 |
| 111 | 111 | 0.698 |
| 112 | 112 | 0.738 |
| 113 | 113 | 1.02994e-5 |
| 114 | 114 | 0.188 |
| 115 | 115 | 0.0739 |
| 116 | 116 | 0.0541 |
| 117 | 117 | 0.0206 |
| 118 | 118 | 0.0248 |
| 119 | 119 | 0.214 |
| 12 | 12 | 0.981 |
| 120 | 120 | 0.746 |
| 121 | 121 | 0.152 |
| 122 | 122 | 0.0153 |
| 123 | 123 | 0.422 |
| 124 | 124 | 0.0699 |
| 125 | 125 | 0.389 |
| 126 | 126 | 0.743 |
| 127 | 127 | 0.39 |
| 128 | 128 | 0.0819 |
| 129 | 129 | 0.997 |
| 13 | 13 | 0.641 |
| 130 | 130 | 0.662 |
| 131 | 131 | 0.841 |
| 132 | 132 | 0.0627 |
| 133 | 133 | 0.476 |
| 134 | 134 | 0.331 |
| 135 | 135 | 0.237 |
| 136 | 136 | 0.136 |
| 137 | 137 | 0.86 |
| 138 | 138 | 0.8 |
| 139 | 139 | 0.148 |
| 14 | 14 | 0.512 |
| 140 | 140 | 0.907 |
| 141 | 141 | 0.434 |
| 142 | 142 | 0.821 |
| 143 | 143 | 0.00692 |
| 144 | 144 | 0.166 |
| 145 | 145 | 0.753 |
| 146 | 146 | 0.405 |
| 147 | 147 | 0.0449 |
| 148 | 148 | 0.986 |
| 149 | 149 | 0.128 |
| 15 | 15 | 0.178 |
| 150 | 150 | 0.917 |
| 151 | 151 | 0.568 |
| 152 | 152 | 0.456 |
| 153 | 153 | 0.189 |
| 154 | 154 | 0.987 |
| 155 | 155 | 0.352 |
| 156 | 156 | 0.435 |
| 157 | 157 | 0.41 |
| 158 | 158 | 0.498 |
| 159 | 159 | 0.795 |
| 16 | 16 | 0.473 |
| 160 | 160 | 0.244 |
| 161 | 161 | 0.478 |
| 162 | 162 | 0.0718 |
| 163 | 163 | 0.0175 |
| 164 | 164 | 0.465 |
| 165 | 165 | 0.416 |
| 166 | 166 | 0.0337 |
| 167 | 167 | 0.107 |
| 168 | 168 | 0.766 |
| 169 | 169 | 0.066 |
| 17 | 17 | 0.962 |
| 18 | 18 | 0.264 |
| 19 | 19 | 0.00693 |
| 2 | 2 | 0.138 |
| 20 | 20 | 0.0181 |
| 21 | 21 | 0.226 |
| 22 | 22 | 0.564 |
| 23 | 23 | 0.629 |
| 24 | 24 | 0.0562 |
| 25 | 25 | 0.533 |
| 26 | 26 | 0.602 |
| 27 | 27 | 0.958 |
| 28 | 28 | 0.219 |
| 29 | 29 | 0.215 |
| 3 | 3 | 0.439 |
| 30 | 30 | 0.175 |
| 31 | 31 | 0.355 |
| 32 | 32 | 4.31629e-9 |
| 33 | 33 | 0.255 |
| 34 | 34 | 0.121 |
| 35 | 35 | 0.823 |
| 36 | 36 | 0.124 |
| 37 | 37 | 0.224 |
| 38 | 38 | 0.854 |
| 39 | 39 | 0.401 |
| 4 | 4 | 0.358 |
| 40 | 40 | 0.634 |
| 41 | 41 | 0.549 |
| 42 | 42 | 0.225 |
| 43 | 43 | 0.899 |
| 44 | 44 | 0.0523 |
| 45 | 45 | 0.314 |
| 46 | 46 | 0.799 |
| 47 | 47 | 0.929 |
| 48 | 48 | 0.825 |
| 49 | 49 | 0.781 |
| 5 | 5 | 0.379 |
| 50 | 50 | 0.646 |
| 51 | 51 | 0.809 |
| 52 | 52 | 0.244 |
| 53 | 53 | 0.823 |
| 54 | 54 | 0.451 |
| 55 | 55 | 0.359 |
| 56 | 56 | 0.734 |
| 57 | 57 | 0.703 |
| 58 | 58 | 0.902 |
| 59 | 59 | 0.891 |
| 6 | 6 | 0.735 |
| 60 | 60 | 0.546 |
| 61 | 61 | 0.356 |
| 62 | 62 | 0.68 |
| 63 | 63 | 0.588 |
| 64 | 64 | 0.956 |
| 65 | 65 | 0.511 |
| 66 | 66 | 0.0718 |
| 67 | 67 | 0.388 |
| 68 | 68 | 0.0844 |
| 69 | 69 | 0.256 |
| 7 | 7 | 0.911 |
| 70 | 70 | 0.996 |
| 71 | 71 | 0.267 |
| 72 | 72 | 0.317 |
| 73 | 73 | 0.485 |
| 74 | 74 | 0.296 |
| 75 | 75 | 0.0545 |
| 76 | 76 | 0.174 |
| 77 | 77 | 0.343 |
| 78 | 78 | 0.509 |
| 79 | 79 | 0.047 |
| 8 | 8 | 0.425 |
| 80 | 80 | 0.68 |
| 81 | 81 | 0.632 |
| 82 | 82 | 0.306 |
| 83 | 83 | 0.371 |
| 84 | 84 | 0.495 |
| 85 | 85 | 0.107 |
| 86 | 86 | 0.444 |
| 87 | 87 | 0.00564 |
| 88 | 88 | 0.512 |
| 89 | 89 | 0.265 |
| 9 | 9 | 0.816 |
| 90 | 90 | 0.52 |
| 91 | 91 | 0.0664 |
| 92 | 92 | 0.911 |
| 93 | 93 | 0.717 |
| 94 | 94 | 0.195 |
| 95 | 95 | 0.0015 |
| 96 | 96 | 0.762 |
| 97 | 97 | 0.829 |
| 98 | 98 | 0.792 |
| 99 | 99 | 0.0154 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11776
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010066 (human skeletal muscle - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0003104 (mesenchyme)
UBERON:0010316 (germ layer / neural crest)
