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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005384
|accession_numbers=CAGE;DRX008721;DRR009593;DRZ001018;DRZ002403;DRZ012368;DRZ013753
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr19:46801639..46801699,+!p1@HIF3A!2.48!301.55!HIF3A;;chr19:46800289..46800327,+!p2@HIF3A!2.36!229.64!HIF3A;;chr1:203055129..203055147,-!p1@MYOG!2.25!175.13!MYOG;;chr15:42749722..42749739,-!p2@ZFP106!2.23!294.59!ZFP106;;chr1:40105299..40105326,-!p1@HEYL!2.09!120.62!HEYL;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.04!109.02!PEG3;;chr9:20382446..20382493,-!p4@MLLT3!1.91!81.19!MLLT3;;chr10:131762504..131762555,-!p1@EBF3!1.86!71.91!EBF3;;chr8:25902876..25902936,-!p1@EBF2!1.86!70.75!EBF2;;chr12:81110684..81110700,+!p1@MYF5!1.80!61.47!MYF5;;chr2:24714729..24714761,+!p1@NCOA1!1.78!59.15!NCOA1;;chr20:62680984..62680999,-!p1@SOX18!1.72!67.27!SOX18;;chr1:119530493..119530572,-!p1@TBX15!1.72!51.03!TBX15;;chr2:5832508..5832524,+!p1@SOX11!1.70!48.71!SOX11;;chr9:1050331..1050363,+!p1@DMRT2!1.69!47.55!DMRT2;;chr22:19748231..19748317,+!p1@TBX1!1.68!46.39!TBX1;;chr19:2867325..2867348,+!p1@ZNF556!1.68!46.39!ZNF556;;chr11:125034640..125034655,+!p1@PKNOX2!1.65!44.07!PKNOX2;;chr8:10588010..10588030,-!p1@SOX7!1.64!42.91!SOX7;;chr7:15726296..15726315,-!p1@MEOX2!1.62!40.59!MEOX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.59!96.26!ZFPM2;;chr12:81101404..81101421,+!p1@MYF6!1.59!38.27!MYF6;;chr14:61116183..61116208,-!p1@SIX1!1.55!125.26!SIX1;;chr5:158526917..158526932,-!p1@EBF1!1.51!75.39!EBF1;;chr20:50179368..50179392,-!p2@NFATC2!1.50!39.43!NFATC2;;chr17:1959369..1959388,+!p2@HIC1!1.49!76.55!HIC1;;chr1:165414227..165414242,-!p2@RXRG!1.48!29.00!RXRG;;chr21:39870339..39870443,-!p1@ERG!1.46!27.84!ERG;;chr16:1031762..1031781,+!p1@SOX8!1.46!27.84!SOX8;;chr20:30433396..30433414,-!p1@FOXS1!1.44!26.68!FOXS1;;chr8:55370487..55370503,+!p1@SOX17!1.44!26.68!SOX17;;chr2:19558373..19558392,-!p1@OSR1!1.43!69.59!OSR1;;chr1:170699295..170699343,+!p35@PRRX1!1.42!25.52!PRRX1;;chr1:214161272..214161322,+!p1@PROX1!1.40!33.63!PROX1;;chr12:54779511..54779577,-!p5@ZNF385A!1.40!24.36!ZNF385A;;chr6:126070769..126070801,+!p1@HEY2!1.38!26.68!HEY2;;chr13:72441315..72441454,-!p1@DACH1!1.36!42.91!DACH1;;chr11:17741254..17741282,+!p2@MYOD1!1.36!22.04!MYOD1;;chr17:6926362..6926377,+!p1@BCL6B!1.36!22.04!BCL6B;;chr7:15726243..15726293,-!p2@MEOX2!1.36!22.04!MEOX2;;chr7:27205136..27205164,-!p1@HOXA9!1.36!22.04!HOXA9;;chr15:57511609..57511651,+!p2@TCF12!1.34!34.79!TCF12;;chr16:30389131..30389144,+!p16@ZNF48!1.34!20.88!ZNF48;;chr11:16629261..16629284,-!p1@SOX6!1.34!20.88!SOX6;;chr12:81101472..81101483,+!p2@MYF6!1.34!20.88!MYF6;;chr1:10856639..10856662,-!p2@CASZ1!1.29!18.56!CASZ1;;chr16:79634624..79634642,-!p1@MAF!1.28!69.59!MAF;;chr19:46843663..46843674,+!p8@HIF3A!1.26!17.40!HIF3A;;chr12:125003087..125003141,-!p4@NCOR2!1.24!20.88!NCOR2;;chr8:106330696..106330719,+!p2@ZFPM2!1.24!20.88!ZFPM2;;chr1:170632285..170632309,+!p1@PRRX1!1.24!18.56!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!1.21!15.08!KDM5D;;chr2:119605214..119605230,-!p1@EN1!1.21!15.08!EN1;;chr18:22932080..22932170,-!p1@ZNF521!1.19!60.31!ZNF521;;chr16:79634595..79634620,-!p2@MAF!1.18!25.52!MAF;;chr2:145277882..145277967,-!p3@ZEB2!1.18!24.36!ZEB2;;chr1:23696308..23696339,-!p2@ZNF436!1.17!29.00!ZNF436;;chr16:30389152..30389161,+!p23@ZNF48!1.17!13.92!ZNF48;;chr7:15726176..15726191,-!p3@MEOX2!1.17!13.92!MEOX2;;chr12:52437488..52437507,+!p2@NR4A1!1.17!13.92!NR4A1;;chr13:72441074..72441172,-!p2@DACH1!1.17!13.92!DACH1;;chr6:144329384..144329405,-!p1@PLAGL1!1.16!154.26!PLAGL1;;chr17:53342311..53342400,+!p1@HLF!1.15!15.08!HLF;;chr15:96873984..96873999,+!p3@NR2F2!1.14!92.79!NR2F2;;chr12:3069037..3069119,+!p2@TEAD4!1.14!44.07!TEAD4;;chr7:150945865..150945896,-!p4@SMARCD3!1.14!12.76!SMARCD3;;chr7:27196217..27196246,-!p2@HOXA7!1.14!12.76!HOXA7;;chr3:25470156..25470227,+!p2@RARB!1.14!12.76!RARB;;chr16:85932760..85932775,+!p1@IRF8!1.14!12.76!IRF8;;chr7:150945754..150945789,-!p2@SMARCD3!1.13!38.27!SMARCD3;;chr16:54320675..54320715,-!p1@IRX3!1.13!26.68!IRX3;;chr7:150946015..150946070,-!p3@SMARCD3!1.12!26.68!SMARCD3;;chr6:85474299..85474324,-!p1@TBX18!1.12!22.04!TBX18;;chrX:131623044..131623089,-!p1@MBNL3!1.11!49.87!MBNL3;;chr10:104001289..104001310,-!p2@PITX3!1.10!11.60!PITX3;;chr12:54378923..54378966,+!p1@HOXC10!1.10!11.60!HOXC10;;chr1:18957333..18957375,+!p1@PAX7!1.10!11.60!PAX7;;chr1:18957605..18957623,+!p3@PAX7!1.10!11.60!PAX7;;chr5:158527104..158527135,-!p4@EBF1!1.10!11.60!EBF1;;chr7:27192185..27192209,-!p1@HOXA3!1.10!11.60!HOXA3;;chr8:144512897..144512903,-!p1@MAFA!1.10!11.60!MAFA;;chr8:77593474..77593612,+!p1@ZFHX4!1.09!47.55!ZFHX4;;chr3:12330560..12330579,+!p1@PPARG!1.08!12.76!PPARG;;chr2:145277640..145277771,-!p1@ZEB2!1.07!143.82!ZEB2;;chr10:114709999..114710031,+!p1@TCF7L2!1.06!247.04!TCF7L2;;chr11:125034605..125034636,+!p2@PKNOX2!1.06!10.44!PKNOX2;;chr11:16629205..16629216,-!p16@SOX6!1.06!10.44!SOX6;;chr12:3068668..3068689,+!p7@TEAD4!1.06!10.44!TEAD4;;chr9:124991204..124991246,-!p1@LHX6!1.06!10.44!LHX6;;chr5:88119715..88119757,-!p11@MEF2C!1.06!10.44!MEF2C;;chr7:100065686..100065701,-!p2@TSC22D4!1.06!10.44!TSC22D4;;chr1:151804244..151804310,-!p1@RORC!1.06!10.44!RORC;;chr1:18958008..18958023,+!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|expression_enrichment_score=chr19:46801639..46801699,+!p1@HIF3A!2.48!301.55!HIF3A;;chr19:46800289..46800327,+!p2@HIF3A!2.36!229.64!HIF3A;;chr1:203055129..203055147,-!p1@MYOG!2.25!175.13!MYOG;;chr15:42749722..42749739,-!p2@ZFP106!2.23!294.59!ZFP106;;chr1:40105299..40105326,-!p1@HEYL!2.09!120.62!HEYL;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.04!109.02!PEG3;;chr9:20382446..20382493,-!p4@MLLT3!1.91!81.19!MLLT3;;chr10:131762504..131762555,-!p1@EBF3!1.86!71.91!EBF3;;chr8:25902876..25902936,-!p1@EBF2!1.86!70.75!EBF2;;chr12:81110684..81110700,+!p1@MYF5!1.80!61.47!MYF5;;chr2:24714729..24714761,+!p1@NCOA1!1.78!59.15!NCOA1;;chr20:62680984..62680999,-!p1@SOX18!1.72!67.27!SOX18;;chr1:119530493..119530572,-!p1@TBX15!1.72!51.03!TBX15;;chr2:5832508..5832524,+!p1@SOX11!1.70!48.71!SOX11;;chr9:1050331..1050363,+!p1@DMRT2!1.69!47.55!DMRT2;;chr22:19748231..19748317,+!p1@TBX1!1.68!46.39!TBX1;;chr19:2867325..2867348,+!p1@ZNF556!1.68!46.39!ZNF556;;chr11:125034640..125034655,+!p1@PKNOX2!1.65!44.07!PKNOX2;;chr8:10588010..10588030,-!p1@SOX7!1.64!42.91!SOX7;;chr7:15726296..15726315,-!p1@MEOX2!1.62!40.59!MEOX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.59!96.26!ZFPM2;;chr12:81101404..81101421,+!p1@MYF6!1.59!38.27!MYF6;;chr14:61116183..61116208,-!p1@SIX1!1.55!125.26!SIX1;;chr5:158526917..158526932,-!p1@EBF1!1.51!75.39!EBF1;;chr20:50179368..50179392,-!p2@NFATC2!1.50!39.43!NFATC2;;chr17:1959369..1959388,+!p2@HIC1!1.49!76.55!HIC1;;chr1:165414227..165414242,-!p2@RXRG!1.48!29.00!RXRG;;chr21:39870339..39870443,-!p1@ERG!1.46!27.84!ERG;;chr16:1031762..1031781,+!p1@SOX8!1.46!27.84!SOX8;;chr20:30433396..30433414,-!p1@FOXS1!1.44!26.68!FOXS1;;chr8:55370487..55370503,+!p1@SOX17!1.44!26.68!SOX17;;chr2:19558373..19558392,-!p1@OSR1!1.43!69.59!OSR1;;chr1:170699295..170699343,+!p35@PRRX1!1.42!25.52!PRRX1;;chr1:214161272..214161322,+!p1@PROX1!1.40!33.63!PROX1;;chr12:54779511..54779577,-!p5@ZNF385A!1.40!24.36!ZNF385A;;chr6:126070769..126070801,+!p1@HEY2!1.38!26.68!HEY2;;chr13:72441315..72441454,-!p1@DACH1!1.36!42.91!DACH1;;chr11:17741254..17741282,+!p2@MYOD1!1.36!22.04!MYOD1;;chr17:6926362..6926377,+!p1@BCL6B!1.36!22.04!BCL6B;;chr7:15726243..15726293,-!p2@MEOX2!1.36!22.04!MEOX2;;chr7:27205136..27205164,-!p1@HOXA9!1.36!22.04!HOXA9;;chr15:57511609..57511651,+!p2@TCF12!1.34!34.79!TCF12;;chr16:30389131..30389144,+!p16@ZNF48!1.34!20.88!ZNF48;;chr11:16629261..16629284,-!p1@SOX6!1.34!20.88!SOX6;;chr12:81101472..81101483,+!p2@MYF6!1.34!20.88!MYF6;;chr1:10856639..10856662,-!p2@CASZ1!1.29!18.56!CASZ1;;chr16:79634624..79634642,-!p1@MAF!1.28!69.59!MAF;;chr19:46843663..46843674,+!p8@HIF3A!1.26!17.40!HIF3A;;chr12:125003087..125003141,-!p4@NCOR2!1.24!20.88!NCOR2;;chr8:106330696..106330719,+!p2@ZFPM2!1.24!20.88!ZFPM2;;chr1:170632285..170632309,+!p1@PRRX1!1.24!18.56!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!1.21!15.08!KDM5D;;chr2:119605214..119605230,-!p1@EN1!1.21!15.08!EN1;;chr18:22932080..22932170,-!p1@ZNF521!1.19!60.31!ZNF521;;chr16:79634595..79634620,-!p2@MAF!1.18!25.52!MAF;;chr2:145277882..145277967,-!p3@ZEB2!1.18!24.36!ZEB2;;chr1:23696308..23696339,-!p2@ZNF436!1.17!29.00!ZNF436;;chr16:30389152..30389161,+!p23@ZNF48!1.17!13.92!ZNF48;;chr7:15726176..15726191,-!p3@MEOX2!1.17!13.92!MEOX2;;chr12:52437488..52437507,+!p2@NR4A1!1.17!13.92!NR4A1;;chr13:72441074..72441172,-!p2@DACH1!1.17!13.92!DACH1;;chr6:144329384..144329405,-!p1@PLAGL1!1.16!154.26!PLAGL1;;chr17:53342311..53342400,+!p1@HLF!1.15!15.08!HLF;;chr15:96873984..96873999,+!p3@NR2F2!1.14!92.79!NR2F2;;chr12:3069037..3069119,+!p2@TEAD4!1.14!44.07!TEAD4;;chr7:150945865..150945896,-!p4@SMARCD3!1.14!12.76!SMARCD3;;chr7:27196217..27196246,-!p2@HOXA7!1.14!12.76!HOXA7;;chr3:25470156..25470227,+!p2@RARB!1.14!12.76!RARB;;chr16:85932760..85932775,+!p1@IRF8!1.14!12.76!IRF8;;chr7:150945754..150945789,-!p2@SMARCD3!1.13!38.27!SMARCD3;;chr16:54320675..54320715,-!p1@IRX3!1.13!26.68!IRX3;;chr7:150946015..150946070,-!p3@SMARCD3!1.12!26.68!SMARCD3;;chr6:85474299..85474324,-!p1@TBX18!1.12!22.04!TBX18;;chrX:131623044..131623089,-!p1@MBNL3!1.11!49.87!MBNL3;;chr10:104001289..104001310,-!p2@PITX3!1.10!11.60!PITX3;;chr12:54378923..54378966,+!p1@HOXC10!1.10!11.60!HOXC10;;chr1:18957333..18957375,+!p1@PAX7!1.10!11.60!PAX7;;chr1:18957605..18957623,+!p3@PAX7!1.10!11.60!PAX7;;chr5:158527104..158527135,-!p4@EBF1!1.10!11.60!EBF1;;chr7:27192185..27192209,-!p1@HOXA3!1.10!11.60!HOXA3;;chr8:144512897..144512903,-!p1@MAFA!1.10!11.60!MAFA;;chr8:77593474..77593612,+!p1@ZFHX4!1.09!47.55!ZFHX4;;chr3:12330560..12330579,+!p1@PPARG!1.08!12.76!PPARG;;chr2:145277640..145277771,-!p1@ZEB2!1.07!143.82!ZEB2;;chr10:114709999..114710031,+!p1@TCF7L2!1.06!247.04!TCF7L2;;chr11:125034605..125034636,+!p2@PKNOX2!1.06!10.44!PKNOX2;;chr11:16629205..16629216,-!p16@SOX6!1.06!10.44!SOX6;;chr12:3068668..3068689,+!p7@TEAD4!1.06!10.44!TEAD4;;chr9:124991204..124991246,-!p1@LHX6!1.06!10.44!LHX6;;chr5:88119715..88119757,-!p11@MEF2C!1.06!10.44!MEF2C;;chr7:100065686..100065701,-!p2@TSC22D4!1.06!10.44!TSC22D4;;chr1:151804244..151804310,-!p1@RORC!1.06!10.44!RORC;;chr1:18958008..18958023,+!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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0003104,UBERON:0010316
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0003104,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520fetal%252c%2520donor1.CNhs11776.10066-101I3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520fetal%252c%2520donor1.CNhs11776.10066-101I3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520fetal%252c%2520donor1.CNhs11776.10066-101I3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520fetal%252c%2520donor1.CNhs11776.10066-101I3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520fetal%252c%2520donor1.CNhs11776.10066-101I3.hg38.nobarcode.ctss.bed.gz
|id=FF:10066-101I3
|id=FF:10066-101I3
|is_a=EFO:0002091;;FF:0010066
|is_a=EFO:0002091;;FF:0010066
|is_obsolete=
|is_obsolete=
|library_id=CNhs11776
|library_id_phase_based=2:CNhs11776
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10066
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10066
|name=skeletal muscle, fetal, donor1
|name=skeletal muscle, fetal, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11776,LSID820,release009,COMPLETED
|profile_hcage=CNhs11776,LSID820,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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|rna_box=101
|rna_box=101
|rna_catalog_number=Cat:RtHFN: Skeletal musc
|rna_catalog_number=Cat:RtHFN: Skeletal musc
Line 61: Line 79:
|rna_weight_ug=50
|rna_weight_ug=50
|sample_age=
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_line=
Line 82: Line 101:
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|top_motifs=MEF2{A,B,C,D}:5.31938076627;NR5A1,2:4.02092255441;TAL1_TCF{3,4,12}:3.95243441826;SPZ1:3.52453105331;NR6A1:3.38879902437;GLI1..3:3.29189226393;ESR1:3.11798671485;NR1H4:3.11727426544;GCM1,2:2.69136655759;SRF:2.60738184913;TFAP4:2.48619882124;NHLH1,2:2.4359030741;IKZF2:2.37240049663;NANOG{mouse}:2.34999070815;SOX5:2.29875083303;TOPORS:2.27781991346;HOX{A4,D4}:2.27769478223;KLF4:2.21461329182;TBP:2.20080245294;MYBL2:2.17540875864;ZIC1..3:2.16692402212;SMAD1..7,9:2.06842014619;POU3F1..4:2.03947069085;FOXL1:1.95616717403;LHX3,4:1.85442970941;ZNF384:1.84028835932;TGIF1:1.81063479524;LMO2:1.7657816441;TLX2:1.64201888381;MYOD1:1.64136453613;GTF2A1,2:1.6284038638;HIC1:1.60758001326;PATZ1:1.52679825661;STAT5{A,B}:1.44560932157;MED-1{core}:1.43914297675;RXRA_VDR{dimer}:1.43432036249;TFAP2{A,C}:1.41309015246;GFI1B:1.39966424195;IKZF1:1.39420706568;MZF1:1.39042805924;YY1:1.36702727671;MAZ:1.33734755968;POU1F1:1.32419359051;MAFB:1.32312788859;UFEwm:1.23808375897;PRDM1:1.23501794642;CUX2:1.16127130984;ZNF423:1.15671947096;TLX1..3_NFIC{dimer}:1.14680867497;NFATC1..3:1.10319688357;TFAP2B:1.07066412711;ZNF238:1.06618183429;FOXP3:1.06436312169;EGR1..3:1.06365822474;HOX{A5,B5}:1.06016788024;ALX1:1.03712377726;TEAD1:1.02453647829;BPTF:1.00294897528;NFE2L1:0.994877985214;EVI1:0.968874242559;NKX3-1:0.966016546682;RXR{A,B,G}:0.965143544278;PAX5:0.964603037439;MYFfamily:0.951157664693;GATA4:0.919592707054;RREB1:0.919178764962;MTF1:0.91665196584;GFI1:0.91169814477;SOX17:0.888281922475;PAX6:0.880369867591;GTF2I:0.879994636559;POU6F1:0.86024636047;XBP1:0.850600268629;REST:0.817636760751;NKX2-3_NKX2-5:0.813908550268;POU5F1:0.772961982316;HES1:0.722763607062;ATF2:0.708756930522;PBX1:0.671838038755;SOX{8,9,10}:0.601102226016;TFCP2:0.585894865427;HAND1,2:0.553041887285;ESRRA:0.520264596618;PAX3,7:0.495690528195;TBX4,5:0.464790455145;HMX1:0.440939703994;SP1:0.425128877705;NKX6-1,2:0.398390205961;NFIX:0.385164419633;MTE{core}:0.379599963778;AR:0.379224652221;RFX2..5_RFXANK_RFXAP:0.360120616441;ZNF148:0.348992761941;ALX4:0.344698585455;RORA:0.310738427398;RBPJ:0.282164361015;LEF1_TCF7_TCF7L1,2:0.280727794999;HOX{A6,A7,B6,B7}:0.256039036175;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.221448133636;HOXA9_MEIS1:0.191352632776;FOXP1:0.187763730914;NKX2-1,4:0.174682656028;SNAI1..3:0.172758480172;BREu{core}:0.1668989287;GATA6:0.120033247164;ZFP161:0.10272322036;ARID5B:0.057266360771;STAT2,4,6:0.0129386503241;EP300:0.0106046534334;FOXO1,3,4:-0.0187993064682;SOX2:-0.0627091626157;ZNF143:-0.0631483170548;IRF7:-0.0741405882519;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.075186667638;PAX2:-0.0903038272677;TEF:-0.123886645525;EN1,2:-0.126985680287;CDX1,2,4:-0.151411562945;HNF4A_NR2F1,2:-0.157909451336;NANOG:-0.168009403846;HMGA1,2:-0.180318941473;NR3C1:-0.189031060002;AIRE:-0.199892971072;SPIB:-0.258041601594;E2F1..5:-0.26196526837;XCPE1{core}:-0.266721354638;PITX1..3:-0.284454703695;ZBTB6:-0.287683066406;SPI1:-0.338556961555;HNF1A:-0.398668820543;FOXQ1:-0.405178777736;FOXA2:-0.417962287328;FOXM1:-0.422181950342;EBF1:-0.425162244267;PDX1:-0.438591390864;ETS1,2:-0.480285775016;JUN:-0.513736497602;TP53:-0.531699941699;NFKB1_REL_RELA:-0.547187723226;NKX2-2,8:-0.560251522071;PAX1,9:-0.566434073362;CRX:-0.576150383745;HSF1,2:-0.585628527854;ATF6:-0.587927504276;OCT4_SOX2{dimer}:-0.588256130734;NFIL3:-0.596425977687;SREBF1,2:-0.597335937755;AHR_ARNT_ARNT2:-0.627908440224;FOX{F1,F2,J1}:-0.628945962425;ATF4:-0.64752168744;PAX8:-0.672572390598;GZF1:-0.67417018711;HLF:-0.679115459064;ONECUT1,2:-0.691079297649;DMAP1_NCOR{1,2}_SMARC:-0.693327452635;ZBTB16:-0.695207417327;ZEB1:-0.700780826896;NFY{A,B,C}:-0.738519225252;RFX1:-0.749322844053;FOSL2:-0.750165130923;VSX1,2:-0.756859671225;FOXD3:-0.769698416828;RUNX1..3:-0.78601889381;TFDP1:-0.805421632448;IRF1,2:-0.83606966053;FOX{D1,D2}:-0.870561181259;NKX3-2:-0.87489455495;PPARG:-0.876815253934;NRF1:-0.905187496696;FOS_FOS{B,L1}_JUN{B,D}:-0.933127915369;NFE2L2:-0.936696544006;POU2F1..3:-0.974529706166;ELF1,2,4:-0.981505598033;PAX4:-0.984944216812;BACH2:-0.995994472426;DBP:-1.03880559826;STAT1,3:-1.04786296583;HBP1_HMGB_SSRP1_UBTF:-1.07992401039;NFE2:-1.14714774342;HIF1A:-1.23289287884;ATF5_CREB3:-1.24989263898;CREB1:-1.25191417831;bHLH_family:-1.26153618038;FOX{I1,J2}:-1.26501385789;CEBPA,B_DDIT3:-1.28691184265;FOXN1:-1.29006572795;CDC5L:-1.33238180374;MYB:-1.40505182967;T:-1.40598628193;PRRX1,2:-1.53953258831;ELK1,4_GABP{A,B1}:-1.56917564086;ADNP_IRX_SIX_ZHX:-1.94872909244
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10066-101I3;search_select_hide=table117:FF:10066-101I3
}}
}}

Latest revision as of 12:19, 3 June 2020

Name:skeletal muscle, fetal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11776
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskeletal muscle
dev stage22 weeks fetus
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberA503105
catalog numberCat:RtHFN: Skeletal musc
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005384
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11776 CAGE DRX008721 DRR009593
Accession ID Hg19

Library idBAMCTSS
CNhs11776 DRZ001018 DRZ002403
Accession ID Hg38

Library idBAMCTSS
CNhs11776 DRZ012368 DRZ013753
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0408
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.136
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis1.387
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.334
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes1.619
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0705
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.381
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.334
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.288
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.22
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.901
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0584
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.5
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.334
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0865
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.621
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.334
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal1.035
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.751
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0.901
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.96
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0.334
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11776

Jaspar motifP-value
MA0002.20.0132
MA0003.10.161
MA0004.10.106
MA0006.10.679
MA0007.10.266
MA0009.10.0876
MA0014.10.157
MA0017.10.625
MA0018.20.00649
MA0019.10.987
MA0024.10.177
MA0025.10.0151
MA0027.10.815
MA0028.17.18225e-8
MA0029.10.838
MA0030.10.0461
MA0031.10.00421
MA0035.20.492
MA0038.10.57
MA0039.20.00708
MA0040.10.8
MA0041.10.206
MA0042.10.806
MA0043.11.41417e-4
MA0046.10.0415
MA0047.20.0522
MA0048.10.0504
MA0050.11.16836e-4
MA0051.10.0013
MA0052.11.0344e-23
MA0055.14.9035e-4
MA0057.10.917
MA0058.10.0155
MA0059.10.0835
MA0060.10.00836
MA0061.11.1361e-4
MA0062.24.03688e-15
MA0065.20.972
MA0066.10.51
MA0067.10.0575
MA0068.10.0406
MA0069.10.458
MA0070.10.792
MA0071.10.159
MA0072.10.534
MA0073.10.408
MA0074.10.541
MA0076.11.03972e-9
MA0077.10.75
MA0078.10.534
MA0079.20.46
MA0080.25.96609e-8
MA0081.10.015
MA0083.10.00296
MA0084.10.596
MA0087.10.351
MA0088.10.393
MA0090.10.225
MA0091.14.34533e-5
MA0092.10.661
MA0093.10.0653
MA0099.21.08586e-18
MA0100.10.0944
MA0101.11.32945e-4
MA0102.29.56537e-4
MA0103.10.2
MA0104.20.00342
MA0105.10.00233
MA0106.10.00293
MA0107.12.16835e-4
MA0108.21.84918e-13
MA0111.10.581
MA0112.20.0119
MA0113.10.362
MA0114.10.797
MA0115.10.876
MA0116.10.0263
MA0117.10.0797
MA0119.10.258
MA0122.10.294
MA0124.10.347
MA0125.10.374
MA0131.10.173
MA0135.10.402
MA0136.12.289e-14
MA0137.20.0741
MA0138.20.147
MA0139.10.0873
MA0140.10.607
MA0141.10.408
MA0142.10.0182
MA0143.10.796
MA0144.10.285
MA0145.10.187
MA0146.10.802
MA0147.10.00755
MA0148.10.0399
MA0149.10.0559
MA0150.12.46564e-7
MA0152.10.0285
MA0153.10.799
MA0154.10.137
MA0155.10.0038
MA0156.11.57604e-16
MA0157.10.0116
MA0159.10.915
MA0160.10.117
MA0162.10.348
MA0163.10.752
MA0164.10.796
MA0258.10.00511
MA0259.10.275



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11776

Novel motifP-value
10.895
100.19
1000.583
1010.375
1020.565
1030.271
1040.953
1050.883
1060.272
1070.0389
1080.073
1090.0451
110.637
1100.492
1110.698
1120.738
1131.02994e-5
1140.188
1150.0739
1160.0541
1170.0206
1180.0248
1190.214
120.981
1200.746
1210.152
1220.0153
1230.422
1240.0699
1250.389
1260.743
1270.39
1280.0819
1290.997
130.641
1300.662
1310.841
1320.0627
1330.476
1340.331
1350.237
1360.136
1370.86
1380.8
1390.148
140.512
1400.907
1410.434
1420.821
1430.00692
1440.166
1450.753
1460.405
1470.0449
1480.986
1490.128
150.178
1500.917
1510.568
1520.456
1530.189
1540.987
1550.352
1560.435
1570.41
1580.498
1590.795
160.473
1600.244
1610.478
1620.0718
1630.0175
1640.465
1650.416
1660.0337
1670.107
1680.766
1690.066
170.962
180.264
190.00693
20.138
200.0181
210.226
220.564
230.629
240.0562
250.533
260.602
270.958
280.219
290.215
30.439
300.175
310.355
324.31629e-9
330.255
340.121
350.823
360.124
370.224
380.854
390.401
40.358
400.634
410.549
420.225
430.899
440.0523
450.314
460.799
470.929
480.825
490.781
50.379
500.646
510.809
520.244
530.823
540.451
550.359
560.734
570.703
580.902
590.891
60.735
600.546
610.356
620.68
630.588
640.956
650.511
660.0718
670.388
680.0844
690.256
70.911
700.996
710.267
720.317
730.485
740.296
750.0545
760.174
770.343
780.509
790.047
80.425
800.68
810.632
820.306
830.371
840.495
850.107
860.444
870.00564
880.512
890.265
90.816
900.52
910.0664
920.911
930.717
940.195
950.0015
960.762
970.829
980.792
990.0154



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11776


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010066 (human skeletal muscle - fetal sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0003104 (mesenchyme)
UBERON:0010316 (germ layer / neural crest)

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