FF:10427-106D4: Difference between revisions

Latest revision as of 14:01, 3 June 2020

Name:	b cell line:RPMI1788
Species:	Human (Homo sapiens)
Library ID:	CNhs10744
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	33 year old adult
sex	male
age	33
cell type	b cell
cell line	RPMI1788
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005039

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10744		CAGE		DRX007831		DRR008703

Accession ID Hg19

Library id		BAM		CTSS
CNhs10744		DRZ000128		DRZ001513

Accession ID Hg38

Library id		BAM		CTSS
CNhs10744		DRZ011478		DRZ012863

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0698
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.518
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0504
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0504
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0956
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.0504
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0878
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.124
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.0504
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0162
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.208
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0.911
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.19
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.19
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.0504
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.446
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.189
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0417
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0552
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.0956
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0504
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.0504
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0776
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.42
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0.0252
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0915
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.0489
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0504
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0.116
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.0956
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.348
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0.0504
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.0504
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10744

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0483
MA0003.1	MA0003.1	0.763
MA0004.1	MA0004.1	0.0144
MA0006.1	MA0006.1	0.128
MA0007.1	MA0007.1	0.282
MA0009.1	MA0009.1	0.433
MA0014.1	MA0014.1	0.723
MA0017.1	MA0017.1	0.224
MA0018.2	MA0018.2	0.198
MA0019.1	MA0019.1	0.244
MA0024.1	MA0024.1	1.83346e-5
MA0025.1	MA0025.1	0.62
MA0027.1	MA0027.1	0.677
MA0028.1	MA0028.1	1.12908e-4
MA0029.1	MA0029.1	0.439
MA0030.1	MA0030.1	0.0456
MA0031.1	MA0031.1	0.217
MA0035.2	MA0035.2	0.958
MA0038.1	MA0038.1	0.486
MA0039.2	MA0039.2	0.982
MA0040.1	MA0040.1	0.107
MA0041.1	MA0041.1	0.126
MA0042.1	MA0042.1	0.191
MA0043.1	MA0043.1	0.253
MA0046.1	MA0046.1	0.451
MA0047.2	MA0047.2	0.715
MA0048.1	MA0048.1	0.727
MA0050.1	MA0050.1	3.54772e-17
MA0051.1	MA0051.1	1.3389e-12
MA0052.1	MA0052.1	0.774
MA0055.1	MA0055.1	0.0213
MA0057.1	MA0057.1	0.662
MA0058.1	MA0058.1	0.00577
MA0059.1	MA0059.1	7.23737e-4
MA0060.1	MA0060.1	1.74675e-6
MA0061.1	MA0061.1	2.47067e-14
MA0062.2	MA0062.2	7.17017e-9
MA0065.2	MA0065.2	0.0658
MA0066.1	MA0066.1	0.707
MA0067.1	MA0067.1	0.271
MA0068.1	MA0068.1	0.192
MA0069.1	MA0069.1	0.462
MA0070.1	MA0070.1	0.847
MA0071.1	MA0071.1	0.95
MA0072.1	MA0072.1	0.588
MA0073.1	MA0073.1	0.598
MA0074.1	MA0074.1	0.817
MA0076.1	MA0076.1	2.04537e-6
MA0077.1	MA0077.1	0.244
MA0078.1	MA0078.1	0.0532
MA0079.2	MA0079.2	0.449
MA0080.2	MA0080.2	1.54975e-5
MA0081.1	MA0081.1	0.0189
MA0083.1	MA0083.1	0.28
MA0084.1	MA0084.1	0.211
MA0087.1	MA0087.1	0.244
MA0088.1	MA0088.1	0.0132
MA0090.1	MA0090.1	6.04225e-6
MA0091.1	MA0091.1	0.456
MA0092.1	MA0092.1	0.515
MA0093.1	MA0093.1	0.0148
MA0099.2	MA0099.2	0.15
MA0100.1	MA0100.1	0.122
MA0101.1	MA0101.1	5.05901e-12
MA0102.2	MA0102.2	0.315
MA0103.1	MA0103.1	0.00387
MA0104.2	MA0104.2	3.0351e-4
MA0105.1	MA0105.1	8.42049e-12
MA0106.1	MA0106.1	0.111
MA0107.1	MA0107.1	4.79905e-13
MA0108.2	MA0108.2	0.014
MA0111.1	MA0111.1	0.902
MA0112.2	MA0112.2	0.592
MA0113.1	MA0113.1	0.912
MA0114.1	MA0114.1	0.0692
MA0115.1	MA0115.1	0.828
MA0116.1	MA0116.1	0.00141
MA0117.1	MA0117.1	0.529
MA0119.1	MA0119.1	0.891
MA0122.1	MA0122.1	0.912
MA0124.1	MA0124.1	0.18
MA0125.1	MA0125.1	0.463
MA0131.1	MA0131.1	0.0702
MA0135.1	MA0135.1	0.102
MA0136.1	MA0136.1	4.92883e-9
MA0137.2	MA0137.2	0.688
MA0138.2	MA0138.2	0.229
MA0139.1	MA0139.1	0.465
MA0140.1	MA0140.1	0.572
MA0141.1	MA0141.1	0.531
MA0142.1	MA0142.1	0.317
MA0143.1	MA0143.1	0.524
MA0144.1	MA0144.1	0.246
MA0145.1	MA0145.1	0.451
MA0146.1	MA0146.1	0.333
MA0147.1	MA0147.1	1.34952e-4
MA0148.1	MA0148.1	0.415
MA0149.1	MA0149.1	0.525
MA0150.1	MA0150.1	0.358
MA0152.1	MA0152.1	0.101
MA0153.1	MA0153.1	0.194
MA0154.1	MA0154.1	2.81547e-4
MA0155.1	MA0155.1	0.616
MA0156.1	MA0156.1	6.60216e-8
MA0157.1	MA0157.1	0.152
MA0159.1	MA0159.1	0.166
MA0160.1	MA0160.1	0.129
MA0162.1	MA0162.1	0.806
MA0163.1	MA0163.1	3.64874e-11
MA0164.1	MA0164.1	0.394
MA0258.1	MA0258.1	0.408
MA0259.1	MA0259.1	0.00859

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10744

Novel motif	Logo	P-value
1	1	0.0136
10	10	0.0218
100	100	0.333
101	101	0.296
102	102	0.765
103	103	0.528
104	104	0.501
105	105	0.735
106	106	0.857
107	107	0.698
108	108	0.458
109	109	0.076
11	11	0.234
110	110	0.204
111	111	0.171
112	112	0.501
113	113	0.56
114	114	0.687
115	115	0.956
116	116	0.854
117	117	0.0263
118	118	0.0605
119	119	0.0908
12	12	0.996
120	120	0.929
121	121	0.407
122	122	0.599
123	123	2.36055e-4
124	124	0.152
125	125	0.529
126	126	0.176
127	127	0.316
128	128	0.613
129	129	0.809
13	13	0.0389
130	130	0.88
131	131	0.793
132	132	0.301
133	133	0.759
134	134	0.789
135	135	0.748
136	136	0.536
137	137	0.604
138	138	0.433
139	139	0.898
14	14	0.57
140	140	0.444
141	141	0.449
142	142	0.837
143	143	0.501
144	144	0.289
145	145	0.309
146	146	0.851
147	147	0.104
148	148	0.0547
149	149	0.26
15	15	0.132
150	150	0.731
151	151	0.451
152	152	0.146
153	153	0.534
154	154	0.991
155	155	0.0672
156	156	0.956
157	157	0.162
158	158	0.144
159	159	0.748
16	16	0.633
160	160	0.387
161	161	0.118
162	162	0.274
163	163	0.887
164	164	0.146
165	165	0.428
166	166	0.518
167	167	0.308
168	168	0.674
169	169	0.815
17	17	0.886
18	18	0.71
19	19	0.492
2	2	0.283
20	20	0.127
21	21	0.28
22	22	0.867
23	23	0.209
24	24	0.134
25	25	0.133
26	26	0.128
27	27	0.904
28	28	0.419
29	29	0.00662
3	3	0.124
30	30	0.0712
31	31	0.63
32	32	0.188
33	33	0.275
34	34	0.647
35	35	0.161
36	36	0.0351
37	37	0.236
38	38	0.643
39	39	0.386
4	4	0.615
40	40	0.347
41	41	0.656
42	42	0.083
43	43	0.49
44	44	0.485
45	45	0.355
46	46	0.283
47	47	0.0623
48	48	0.0921
49	49	0.194
5	5	0.864
50	50	0.817
51	51	0.735
52	52	0.606
53	53	0.381
54	54	0.764
55	55	0.208
56	56	0.867
57	57	0.352
58	58	0.128
59	59	0.452
6	6	0.811
60	60	0.672
61	61	0.0914
62	62	0.189
63	63	0.836
64	64	0.428
65	65	0.843
66	66	0.044
67	67	0.854
68	68	0.3
69	69	0.74
7	7	0.127
70	70	0.796
71	71	0.0648
72	72	0.269
73	73	0.978
74	74	0.843
75	75	0.00834
76	76	0.204
77	77	0.419
78	78	0.0993
79	79	0.64
8	8	0.697
80	80	0.249
81	81	0.183
82	82	0.602
83	83	0.953
84	84	0.26
85	85	0.434
86	86	0.115
87	87	0.142
88	88	0.784
89	89	0.556
9	9	0.472
90	90	0.0514
91	91	0.746
92	92	0.994
93	93	0.76
94	94	0.402
95	95	0.039
96	96	0.378
97	97	0.252
98	98	0.398
99	99	0.185

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10744

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101522 B-lymphocyte cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101522 (B-lymphocyte cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005039
+|accession_numbers=CAGE;DRX007831;DRR008703;DRZ000128;DRZ001513;DRZ011478;DRZ012863
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.62!415.29!IRF4;;chr11:111249993..111250006,-!p1@POU2AF1!2.58!381.19!POU2AF1;;chr16:85932760..85932775,+!p1@IRF8!2.33!210.60!IRF8;;chr2:68592406..68592424,+!p1@PLEK!2.26!181.92!PLEK;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!2.25!175.89!MEF2B;;chr19:50922187..50922204,+!p1@SPIB!2.21!161.73!SPIB;;chr19:36204309..36204335,+!p1@ZBTB32!2.08!119.27!ZBTB32;;chr3:101546827..101546847,+!p2@NFKBIZ!1.89!105.24!NFKBIZ;;chr17:38020392..38020477,-!p1@IKZF3!1.88!74.59!IKZF3;;chr2:231090433..231090469,+!p1@SP140!1.82!64.87!SP140;;chr2:231090471..231090504,+!p2@SP140!1.77!58.47!SP140;;chr14:75988831..75988847,+!p2@BATF!1.76!56.00!BATF;;chr15:57511609..57511651,+!p2@TCF12!1.73!86.04!TCF12;;chr14:75988771..75988826,+!p1@BATF!1.73!68.68!BATF;;chr12:101869096..101869118,+!p1@SPIC!1.69!48.37!SPIC;;chr8:135577829..135577861,-!p6@ZFAT!1.59!38.16!ZFAT;;chr3:189349162..189349207,+!p2@TP63!1.56!35.08!TP63;;chr1:25256756..25256774,-!p1@RUNX3!1.51!58.22!RUNX3;;chr19:42636586..42636607,-!p1@POU2F2!1.48!79.51!POU2F2;;chr6:144385698..144385742,-!p2@PLAGL1!1.46!33.97!PLAGL1;;chr4:185395590..185395627,-!p3@IRF2!1.44!32.74!IRF2;;chr1:25291475..25291511,-!p2@RUNX3!1.43!26.22!RUNX3;;chr1:3569072..3569093,+!p1@TP73!1.42!25.23!TP73;;chr2:185463247..185463263,+!p1@ZNF804A!1.41!43.20!ZNF804A;;chr1:170632115..170632136,+!p9@PRRX1!1.38!22.89!PRRX1;;chr2:68592394..68592405,+!p2@PLEK!1.37!22.40!PLEK;;chr19:42627037..42627084,-!p3@POU2F2!1.34!21.05!POU2F2;;chrY:21906594..21906622,-!p1@KDM5D!1.34!21.05!KDM5D;;chr11:47400078..47400106,-!p1@SPI1!1.33!20.19!SPI1;;chr5:88178983..88179012,-!p1@MEF2C!1.28!135.02!MEF2C;;chr14:29235961..29236008,+!p1@FOXG1!1.28!18.22!FOXG1;;chr18:52989031..52989079,-!p2@TCF4!1.27!40.86!TCF4;;chr2:231090344..231090361,-!p3@SP110!1.25!16.74!SP110;;chr7:128577972..128578047,+!p1@IRF5!1.24!25.48!IRF5;;chr7:50348268..50348366,+!p4@IKZF1!1.24!16.49!IKZF1;;chr8:76319876..76319926,+!p1@HNF4G!1.24!16.49!HNF4G;;chr7:28610099..28610113,+!p5@CREB5!1.24!16.25!CREB5;;chr9:37034469..37034474,-!p1@PAX5!1.23!15.88!PAX5;;chr14:29236269..29236285,+!p3@FOXG1!1.22!15.63!FOXG1;;chr1:201979703..201979721,+!p2@ELF3!1.19!14.52!ELF3;;chr15:60884706..60884743,-!p1@RORA!1.17!71.02!RORA;;chr7:50343634..50343717,+!p2@IKZF1!1.17!13.91!IKZF1;;chr1:170632137..170632172,+!p10@PRRX1!1.17!13.79!PRRX1;;chr8:72756667..72756736,-!p2@MSC!1.16!20.80!MSC;;chr15:57511589..57511608,+!p4@TCF12!1.16!13.29!TCF12;;chr11:61520075..61520136,+!p1@C11orf9!1.15!28.06!C11orf9;;chr1:27023752..27023799,+!p4@ARID1A!1.15!17.23!ARID1A;;chr5:142780237..142780261,-!p7@NR3C1!1.15!13.05!NR3C1;;chr6:44233252..44233296,-!p1@NFKBIE!1.12!118.90!NFKBIE;;chr8:72756637..72756664,-!p3@MSC!1.12!13.79!MSC;;chr6:41700616..41700664,-!p8@TFEB!1.12!12.19!TFEB;;chr17:36105042..36105060,-!p1@HNF1B!1.12!12.06!HNF1B;;chr13:41593425..41593480,-!p1@ELF1!1.11!74.84!ELF1;;chr20:50159198..50159299,-!p1@NFATC2!1.10!16.86!NFATC2;;chr5:142782823..142782854,-!p3@NR3C1!1.08!15.88!NR3C1;;chr8:22550982..22550999,-!p1@EGR3!1.07!30.77!EGR3;;chr4:146859626..146859669,-!p2@ZNF827!1.07!15.63!ZNF827;;chr13:28494130..28494168,+!p1@PDX1!1.06!10.46!PDX1;;chr19:50432453..50432468,+!p1@ATF5!1.05!574.44!ATF5;;chr11:615570..615721,-!p2@IRF7!1.05!20.43!IRF7;;chr1:170632051..170632081,+!p16@PRRX1!1.05!10.34!PRRX1;;chr19:45252008..45252024,+!p2@BCL3!1.04!33.36!BCL3;;chr3:141121847..141121868,+!p5@ZBTB38!1.04!15.14!ZBTB38;;chr5:88179017..88179046,-!p2@MEF2C!1.03!39.88!MEF2C;;chr17:40440359..40440386,+!p4@STAT5A!1.03!9.72!STAT5A;;chr1:25291620..25291635,-!p4@RUNX3!1.03!9.60!RUNX3;;chr17:45810594..45810608,+!p1@TBX21!1.02!9.48!TBX21;;chr8:86099884..86099918,+!p4@E2F5!1.02!9.48!E2F5;;chr10:104155480..104155534,+!p2@NFKB2!1.01!61.05!NFKB2;;chr6:106534192..106534224,+!p1@PRDM1!1.01!26.71!PRDM1;;chr8:72756063..72756125,-!p1@MSC!1.01!18.83!MSC;;chr19:36391434..36391450,-!p1@NFKBID!1.01!18.22!NFKBID;;chr1:25291648..25291665,-!p7@RUNX3!1.00!9.11!RUNX3;;chr1:151319654..151319698,-!p2@RFX5!0.99!19.32!RFX5;;chr1:38512457..38512474,-!p1@POU3F1!0.99!9.72!POU3F1;;chr5:142780189..142780223,-!p6@NR3C1!0.99!8.86!NR3C1;;chr5:142780280..142780294,-!p16@NR3C1!0.99!8.74!NR3C1;;chr5:158526917..158526932,-!p1@EBF1!0.98!21.91!EBF1;;chr4:185395633..185395651,-!p2@IRF2!0.98!13.79!IRF2;;chr14:75988851..75988862,+!p3@BATF!0.98!8.62!BATF;;chr1:158979686..158979745,+!p1@IFI16!0.97!279.40!IFI16;;chr6:34204973..34204990,+!p4@HMGA1!0.97!115.08!HMGA1;;chr19:926001..926046,+!p1@ARID3A!0.97!29.42!ARID3A;;chr1:201979743..201979762,+!p1@ELF3!0.97!8.37!ELF3;;chr7:50344289..50344323,+!p1@IKZF1!0.97!8.37!IKZF1;;chr4:106068026..106068084,+!p1@TET2!0.96!76.07!TET2;;chr15:74833584..74833626,+!p1@ARID3B!0.96!19.45!ARID3B;;chr8:135577784..135577795,-!p15@ZFAT!0.96!8.12!ZFAT;;chr3:141747459..141747475,-!p1@TFDP2!0.95!67.57!TFDP2;;chr8:135577814..135577826,-!p12@ZFAT!0.95!7.88!ZFAT;;chr7:97840743..97840786,+!p1@BHLHA15!0.94!7.75!BHLHA15;;chr8:76319850..76319870,+!p4@HNF4G!0.94!7.75!HNF4G;;chr1:167298300..1672983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@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
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@@ Line 46: / Line 60: @@
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 |sample_cell_line=RPMI1788
@@ Line 83: / Line 100: @@
 |top_motifs=POU2F1..3:2.758278419;POU5F1:2.43290289398;HIF1A:2.38003687229;PAX6:1.61957834197;NFKB1_REL_RELA:1.60813867479;HOXA9_MEIS1:1.59914055545;NFY{A,B,C}:1.51508607029;IRF1,2:1.50826051587;VSX1,2:1.42891680921;ELF1,2,4:1.41661606178;EVI1:1.41464408118;AHR_ARNT_ARNT2:1.37646179247;CDX1,2,4:1.32308481494;MYB:1.27969215398;PITX1..3:1.27855159924;NKX6-1,2:1.23596464115;PAX8:1.20012814038;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.1775021433;IRF7:1.1761609463;ZBTB16:1.17109770714;DMAP1_NCOR{1,2}_SMARC:1.15652799866;TOPORS:1.09526762692;E2F1..5:1.08685415961;YY1:1.06102512226;MYOD1:1.0221771558;HES1:1.0133245455;ELK1,4_GABP{A,B1}:0.984789709165;FOXP1:0.950042757711;FOXA2:0.932984288937;HBP1_HMGB_SSRP1_UBTF:0.91559085024;BREu{core}:0.812453281506;PBX1:0.811463513658;NANOG{mouse}:0.801712287524;AIRE:0.755745581009;PAX3,7:0.75143888973;FOXP3:0.73715151091;PDX1:0.726908420661;SPI1:0.721525054693;TLX2:0.704558115146;LMO2:0.70107023242;FOXN1:0.693580226367;POU3F1..4:0.666765436112;RUNX1..3:0.652432171734;GATA6:0.642432950952;ATF5_CREB3:0.615352191023;OCT4_SOX2{dimer}:0.613082574369;TGIF1:0.595231254962;CREB1:0.587915996436;HSF1,2:0.578367036882;ZNF143:0.536175857712;ZEB1:0.494744059932;CUX2:0.487700931469;SPIB:0.47509033502;RXRA_VDR{dimer}:0.465809476613;NRF1:0.439151602253;NKX2-2,8:0.427734330503;PAX2:0.420778805303;ATF4:0.400943212443;POU1F1:0.38729789693;SNAI1..3:0.346937044632;ETS1,2:0.322081704814;HMGA1,2:0.267175238677;BPTF:0.223286421922;TP53:0.154821204042;NR5A1,2:0.154338396113;CDC5L:0.1502282087;SOX{8,9,10}:0.111479714564;STAT5{A,B}:0.0923130355427;MEF2{A,B,C,D}:0.0895582847903;CRX:0.0655788293082;HNF1A:0.0596602216813;GFI1:0.0550385889778;SREBF1,2:0.0209128562482;GCM1,2:-0.000724393792006;RFX2..5_RFXANK_RFXAP:-0.0173290415999;HNF4A_NR2F1,2:-0.0225229329906;bHLH_family:-0.0403136314252;HAND1,2:-0.0404599162844;PAX4:-0.0718319452478;HOX{A6,A7,B6,B7}:-0.0747910273551;PPARG:-0.0789207327933;EP300:-0.0812475787993;PRRX1,2:-0.0999198091184;ALX4:-0.100488260999;FOSL2:-0.108003601647;NFE2:-0.110913260722;FOX{F1,F2,J1}:-0.135256675518;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.152491982493;ATF6:-0.241035685048;SOX5:-0.247142466061;TEF:-0.247487585679;IKZF2:-0.257564199128;ZFP161:-0.266447824231;FOXQ1:-0.268918088997;NFATC1..3:-0.26945379572;HLF:-0.274386295654;NKX2-1,4:-0.27845008227;STAT1,3:-0.298357537755;PRDM1:-0.308355801442;ATF2:-0.309477694379;TBP:-0.313514281777;EBF1:-0.317396619775;SPZ1:-0.332918749183;RBPJ:-0.341079223535;ESR1:-0.35060962011;LEF1_TCF7_TCF7L1,2:-0.385672836381;RXR{A,B,G}:-0.388276280419;ARID5B:-0.401722369953;STAT2,4,6:-0.404128394761;SOX17:-0.412342598321;NKX3-2:-0.415993836536;NFIL3:-0.422268603771;SMAD1..7,9:-0.431924896795;RFX1:-0.43758087998;BACH2:-0.44824164199;NR6A1:-0.456492434745;ONECUT1,2:-0.465341750916;ZNF384:-0.475801850555;HOX{A4,D4}:-0.481598416143;FOX{I1,J2}:-0.489999120846;SRF:-0.490083045179;FOS_FOS{B,L1}_JUN{B,D}:-0.492040089099;FOXO1,3,4:-0.507844181563;NHLH1,2:-0.512705373309;CEBPA,B_DDIT3:-0.538036881488;EN1,2:-0.546553276415;NKX3-1:-0.556200091961;RORA:-0.58676177274;NANOG:-0.608385578316;AR:-0.611978460729;ZNF148:-0.631799697399;TFAP4:-0.650685085499;DBP:-0.654127093757;MAFB:-0.656629525861;GATA4:-0.660498012213;TFDP1:-0.675402526248;MYFfamily:-0.677563648713;JUN:-0.689962001908;RREB1:-0.704120655245;HOX{A5,B5}:-0.721961970144;GFI1B:-0.723135040086;ADNP_IRX_SIX_ZHX:-0.759615202593;POU6F1:-0.769193301935;TBX4,5:-0.78676127954;ESRRA:-0.803174948504;NR1H4:-0.82154938956;EGR1..3:-0.823713710387;ALX1:-0.868072873535;GLI1..3:-0.87805789328;SOX2:-0.884004215135;PATZ1:-0.896792650852;LHX3,4:-0.900718626094;NKX2-3_NKX2-5:-0.923484000901;MZF1:-0.932279701323;GTF2A1,2:-0.94648465595;MTE{core}:-0.952151934329;MYBL2:-0.955253372267;HIC1:-0.979726502839;UFEwm:-0.990995435503;PAX5:-1.01093617366;NFIX:-1.02738257208;REST:-1.04075286149;NFE2L2:-1.04528949865;MED-1{core}:-1.10685821386;MTF1:-1.12833974982;XCPE1{core}:-1.12846810645;GTF2I:-1.12977878151;FOX{D1,D2}:-1.13644305953;XBP1:-1.1644549462;ZNF423:-1.18860928799;IKZF1:-1.21119606221;ZIC1..3:-1.23928704785;KLF4:-1.23998918984;SP1:-1.24337503361;ZNF238:-1.26018956125;GZF1:-1.26485642119;NR3C1:-1.31249955219;TFCP2:-1.33341793236;ZBTB6:-1.36198834076;NFE2L1:-1.36958499756;PAX1,9:-1.37047349926;TEAD1:-1.37827844181;FOXD3:-1.40056943854;MAZ:-1.40263829222;TLX1..3_NFIC{dimer}:-1.42469152425;TFAP2{A,C}:-1.44691919081;HMX1:-1.45113544601;TAL1_TCF{3,4,12}:-1.46552536902;TFAP2B:-1.58535386231;FOXL1:-1.6915514992;FOXM1:-1.71699376185;T:-1.79748575043
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10427-106D4;search_select_hide=table117:FF:10427-106D4
 }}

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FF:10427-106D4: Difference between revisions

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Latest revision as of 14:01, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0