FF:10476-106I8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005827 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007780;DRR008652;DRZ000077;DRZ001462;DRZ011427;DRZ012812 | ||
| | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:0060058,DOID:14566,DOID:0060083 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100104,FF:0100889,FF:0101154 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100104 | |fonse_cell_line=FF:0100104 | ||
|fonse_cell_line_closure=FF:0100104 | |fonse_cell_line_closure=FF:0100104 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Burkitt%2527s%2520lymphoma%2520cell%2520line%253aRAJI.CNhs11268.10476-106I8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Burkitt%2527s%2520lymphoma%2520cell%2520line%253aRAJI.CNhs11268.10476-106I8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Burkitt%2527s%2520lymphoma%2520cell%2520line%253aRAJI.CNhs11268.10476-106I8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Burkitt%2527s%2520lymphoma%2520cell%2520line%253aRAJI.CNhs11268.10476-106I8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Burkitt%2527s%2520lymphoma%2520cell%2520line%253aRAJI.CNhs11268.10476-106I8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10476-106I8 | |id=FF:10476-106I8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0101154 | ||
|is_obsolete= | |||
|library_id=CNhs11268 | |||
|library_id_phase_based=2:CNhs11268 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10476 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10476 | |||
|name=Burkitt's lymphoma cell line:RAJI | |name=Burkitt's lymphoma cell line:RAJI | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11268,LSID758,release008,COMPLETED | |profile_hcage=CNhs11268,LSID758,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,1.1485893724972,0,0,0,0,0,-0.0060439106258062,0.15427411946058,-0.166153808662969,-0.282403560576942,0,0,0,0,0,0,0,0,0,0.108679489543122,0,0,0,0.000951109112152265,0,0,0,0,1.02223607501687,-0.0402274392143935,0,0,-0.132956589778862,0,0,0,0,0,0.0273963989062099,0.227285242753939,0,0,0,0.057730457053664,0,-0.154958291085194,0,0,0,0,0,0,0,0,0.276029321337059,0,0,0,0.057730457053664,0,-0.0460961659993049,0.057730457053664,-0.0969923612426051,0,0,0.357226858294781,0,0,0,0,0,0,0,0,0.057730457053664,0,0.454570485507878,0.054339744771561,0,0,0,0,0,0.057730457053664,0,0,0,0,0,-0.0364210165103085,-0.552571649267773,0,0,0,-0.0584468268118252,0.033834192727743,0,0,0.126631983307125,0,0.169843676231757,-0.109611972274063,0,0,0,0.108679489543122,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400701999910824,0.057730457053664,0,0,-0.117483206123011,-0.192016994456169,0,0,0,0,0,0 | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=46.92175 | |rna_weight_ug=46.92175 | ||
|sample_age=11 | |sample_age=11 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1647 | |sample_cell_catalog=RCB1647 | ||
|sample_cell_line=RAJI | |sample_cell_line=RAJI | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.57406182463008e-245!GO:0043227;membrane-bound organelle;4.4744124711929e-220!GO:0043231;intracellular membrane-bound organelle;7.91186605809665e-220!GO:0043226;organelle;8.44447459229426e-210!GO:0043229;intracellular organelle;2.21132714549061e-209!GO:0044422;organelle part;3.55143929740612e-172!GO:0044446;intracellular organelle part;2.18044406445003e-170!GO:0005737;cytoplasm;2.02125226492261e-154!GO:0032991;macromolecular complex;4.25077903493191e-134!GO:0044444;cytoplasmic part;7.24424029008895e-118!GO:0044237;cellular metabolic process;9.37471079611413e-114!GO:0044238;primary metabolic process;1.185302019056e-108!GO:0030529;ribonucleoprotein complex;1.51112394175888e-107!GO:0005634;nucleus;5.36876295963569e-107!GO:0044428;nuclear part;4.87439912187646e-106!GO:0003723;RNA binding;7.81081289762617e-99!GO:0043170;macromolecule metabolic process;4.39387956003108e-98!GO:0043233;organelle lumen;4.54363168349932e-97!GO:0031974;membrane-enclosed lumen;4.54363168349932e-97!GO:0005739;mitochondrion;5.04716903816895e-86!GO:0006396;RNA processing;2.85050297194622e-72!GO:0043234;protein complex;4.81133412335571e-70!GO:0006412;translation;9.11393596112115e-68!GO:0005840;ribosome;1.58063767845735e-62!GO:0031981;nuclear lumen;2.29212413888141e-62!GO:0043283;biopolymer metabolic process;2.45950187619874e-61!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.97692474280041e-60!GO:0044429;mitochondrial part;1.01239412035236e-58!GO:0010467;gene expression;7.66690603319955e-55!GO:0006259;DNA metabolic process;1.1498687692993e-54!GO:0016071;mRNA metabolic process;3.61828390720876e-54!GO:0003735;structural constituent of ribosome;4.62102944512019e-54!GO:0005515;protein binding;1.3267989858704e-53!GO:0044249;cellular biosynthetic process;8.24555415840313e-52!GO:0031967;organelle envelope;1.54235053716376e-51!GO:0031975;envelope;3.7257138278351e-51!GO:0019538;protein metabolic process;3.7257138278351e-51!GO:0009058;biosynthetic process;1.41819854250703e-50!GO:0009059;macromolecule biosynthetic process;5.10466236102839e-48!GO:0031090;organelle membrane;1.65347084792318e-47!GO:0033279;ribosomal subunit;3.42578188493598e-47!GO:0044260;cellular macromolecule metabolic process;3.9468556731721e-47!GO:0044267;cellular protein metabolic process;4.26901931805471e-47!GO:0006397;mRNA processing;1.91332962146717e-46!GO:0008380;RNA splicing;2.23179851445798e-46!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.3085146408833e-41!GO:0003676;nucleic acid binding;1.76666517927724e-40!GO:0033036;macromolecule localization;6.68001337794619e-40!GO:0015031;protein transport;3.52960041965428e-39!GO:0006996;organelle organization and biogenesis;2.22505962449525e-38!GO:0005654;nucleoplasm;2.24084237622991e-38!GO:0005829;cytosol;2.79584673585058e-38!GO:0043228;non-membrane-bound organelle;1.70591418425978e-36!GO:0043232;intracellular non-membrane-bound organelle;1.70591418425978e-36!GO:0016043;cellular component organization and biogenesis;1.73107286023034e-36!GO:0046907;intracellular transport;1.8446682033939e-36!GO:0006974;response to DNA damage stimulus;3.47337250580419e-36!GO:0045184;establishment of protein localization;4.28205608057575e-36!GO:0007049;cell cycle;3.13199522422409e-35!GO:0008104;protein localization;3.40406115284079e-35!GO:0065003;macromolecular complex assembly;6.92185656046501e-35!GO:0005740;mitochondrial envelope;1.11101739317702e-34!GO:0005681;spliceosome;8.69436921472871e-34!GO:0000166;nucleotide binding;1.73630770579716e-33!GO:0006886;intracellular protein transport;6.9277874298426e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.01492605507313e-33!GO:0006281;DNA repair;5.42140015108787e-32!GO:0031966;mitochondrial membrane;6.30076472015168e-32!GO:0019866;organelle inner membrane;1.80272943542636e-31!GO:0022607;cellular component assembly;1.14244616095246e-30!GO:0022402;cell cycle process;5.49252905476163e-30!GO:0044445;cytosolic part;7.78931011729158e-30!GO:0005694;chromosome;9.52534835529864e-30!GO:0005743;mitochondrial inner membrane;1.54203728871353e-29!GO:0031980;mitochondrial lumen;7.19581402735151e-29!GO:0005759;mitochondrial matrix;7.19581402735151e-29!GO:0000278;mitotic cell cycle;1.55435736378986e-28!GO:0044451;nucleoplasm part;2.31139992733737e-28!GO:0022403;cell cycle phase;1.3093617015329e-26!GO:0005730;nucleolus;1.67551666714729e-26!GO:0051649;establishment of cellular localization;3.36937032508221e-26!GO:0005524;ATP binding;7.01806249089127e-26!GO:0051641;cellular localization;1.1067281442773e-25!GO:0044427;chromosomal part;1.17475910764541e-25!GO:0015935;small ribosomal subunit;2.94579754986083e-25!GO:0032559;adenyl ribonucleotide binding;3.28822623149677e-25!GO:0030554;adenyl nucleotide binding;5.30365502207466e-25!GO:0016874;ligase activity;1.5507864264838e-24!GO:0000087;M phase of mitotic cell cycle;1.84552076221988e-24!GO:0044265;cellular macromolecule catabolic process;2.0108775382235e-24!GO:0016070;RNA metabolic process;2.07407356779373e-24!GO:0051276;chromosome organization and biogenesis;4.28009704421073e-24!GO:0006119;oxidative phosphorylation;5.74143855248067e-24!GO:0007067;mitosis;6.22792376567905e-24!GO:0017076;purine nucleotide binding;7.58553533130185e-24!GO:0032553;ribonucleotide binding;8.75145914816835e-24!GO:0032555;purine ribonucleotide binding;8.75145914816835e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.20642991501014e-23!GO:0017111;nucleoside-triphosphatase activity;1.20642991501014e-23!GO:0016462;pyrophosphatase activity;1.35584039200809e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;1.591050360626e-23!GO:0044455;mitochondrial membrane part;1.68245641636589e-23!GO:0009719;response to endogenous stimulus;1.83735024138481e-23!GO:0000279;M phase;3.08276486207914e-23!GO:0015934;large ribosomal subunit;3.7442306032898e-23!GO:0016887;ATPase activity;1.62015271508281e-22!GO:0006512;ubiquitin cycle;4.87316614457823e-22!GO:0042623;ATPase activity, coupled;4.95870333088456e-22!GO:0042254;ribosome biogenesis and assembly;8.23262502042905e-21!GO:0022618;protein-RNA complex assembly;8.43626045768078e-21!GO:0043285;biopolymer catabolic process;1.8310998529592e-20!GO:0008135;translation factor activity, nucleic acid binding;2.39044300126916e-20!GO:0019941;modification-dependent protein catabolic process;3.42504302735583e-20!GO:0043632;modification-dependent macromolecule catabolic process;3.42504302735583e-20!GO:0006511;ubiquitin-dependent protein catabolic process;4.17765603150984e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;4.59520330862602e-20!GO:0006260;DNA replication;7.32676849537665e-20!GO:0009057;macromolecule catabolic process;1.05674995891289e-19!GO:0044248;cellular catabolic process;1.18144273497249e-19!GO:0044257;cellular protein catabolic process;1.43321277662509e-19!GO:0006457;protein folding;1.90373573060341e-19!GO:0051301;cell division;2.16737909822908e-19!GO:0004386;helicase activity;3.80749625527577e-19!GO:0005746;mitochondrial respiratory chain;1.27913732417922e-18!GO:0005761;mitochondrial ribosome;2.985526630628e-18!GO:0000313;organellar ribosome;2.985526630628e-18!GO:0012505;endomembrane system;4.07475958088086e-18!GO:0031965;nuclear membrane;4.12888870652305e-18!GO:0006399;tRNA metabolic process;9.25234114308521e-18!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.31074454784308e-17!GO:0005635;nuclear envelope;3.71036550917773e-17!GO:0000502;proteasome complex (sensu Eukaryota);3.73265768074168e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;4.26035690819097e-17!GO:0044453;nuclear membrane part;5.39442534964945e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;1.47864642375139e-16!GO:0000375;RNA splicing, via transesterification reactions;1.47864642375139e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.47864642375139e-16!GO:0006605;protein targeting;1.47864642375139e-16!GO:0006323;DNA packaging;1.65356003036883e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.90798784737652e-16!GO:0050136;NADH dehydrogenase (quinone) activity;2.81188283261979e-16!GO:0003954;NADH dehydrogenase activity;2.81188283261979e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.81188283261979e-16!GO:0008026;ATP-dependent helicase activity;3.69171032443403e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.23041677046117e-16!GO:0016604;nuclear body;6.63594958103118e-16!GO:0005643;nuclear pore;1.10955168985117e-15!GO:0043412;biopolymer modification;1.48707879027328e-15!GO:0003743;translation initiation factor activity;7.93309468685314e-15!GO:0042775;organelle ATP synthesis coupled electron transport;7.94176017729968e-15!GO:0042773;ATP synthesis coupled electron transport;7.94176017729968e-15!GO:0030163;protein catabolic process;7.96841907759472e-15!GO:0051186;cofactor metabolic process;8.43987333779815e-15!GO:0006403;RNA localization;8.54953177861744e-15!GO:0050657;nucleic acid transport;9.46884487536712e-15!GO:0051236;establishment of RNA localization;9.46884487536712e-15!GO:0050658;RNA transport;9.46884487536712e-15!GO:0008134;transcription factor binding;9.60740912585631e-15!GO:0051082;unfolded protein binding;1.30493060633759e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.8626609161321e-14!GO:0045271;respiratory chain complex I;2.8626609161321e-14!GO:0005747;mitochondrial respiratory chain complex I;2.8626609161321e-14!GO:0006364;rRNA processing;3.4326373540958e-14!GO:0065002;intracellular protein transport across a membrane;5.03512337324774e-14!GO:0006913;nucleocytoplasmic transport;7.49644868690834e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.66036339368515e-14!GO:0016072;rRNA metabolic process;7.71653360824777e-14!GO:0046930;pore complex;1.55801217682338e-13!GO:0016779;nucleotidyltransferase activity;1.84946355997426e-13!GO:0051169;nuclear transport;1.94450642830977e-13!GO:0016568;chromatin modification;3.59025871980453e-13!GO:0051726;regulation of cell cycle;3.88191601263772e-13!GO:0016607;nuclear speck;4.97274904343304e-13!GO:0000074;regulation of progression through cell cycle;5.02535802763602e-13!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.26259448958351e-13!GO:0009259;ribonucleotide metabolic process;7.50537935107979e-13!GO:0006413;translational initiation;7.83271063243368e-13!GO:0006163;purine nucleotide metabolic process;8.30758656812542e-13!GO:0006732;coenzyme metabolic process;1.0622876637267e-12!GO:0051028;mRNA transport;1.58861632813598e-12!GO:0044432;endoplasmic reticulum part;2.11648422368561e-12!GO:0006464;protein modification process;2.61153671990754e-12!GO:0006164;purine nucleotide biosynthetic process;2.64012178605813e-12!GO:0000785;chromatin;6.4590396938282e-12!GO:0009260;ribonucleotide biosynthetic process;6.64965475019957e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.79405065050349e-12!GO:0043687;post-translational protein modification;8.3056513803603e-12!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.23419720046038e-12!GO:0004812;aminoacyl-tRNA ligase activity;9.23419720046038e-12!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.23419720046038e-12!GO:0005783;endoplasmic reticulum;1.01112393255152e-11!GO:0008639;small protein conjugating enzyme activity;1.22524730777046e-11!GO:0043038;amino acid activation;1.96911076091323e-11!GO:0006418;tRNA aminoacylation for protein translation;1.96911076091323e-11!GO:0043039;tRNA aminoacylation;1.96911076091323e-11!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.28288497004477e-11!GO:0009150;purine ribonucleotide metabolic process;2.39782400043258e-11!GO:0009056;catabolic process;2.39782400043258e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.42251811464885e-11!GO:0004842;ubiquitin-protein ligase activity;2.42251811464885e-11!GO:0048770;pigment granule;2.95796805894614e-11!GO:0042470;melanosome;2.95796805894614e-11!GO:0012501;programmed cell death;3.13440066690776e-11!GO:0006261;DNA-dependent DNA replication;3.31870677494276e-11!GO:0006915;apoptosis;3.57745310527129e-11!GO:0003712;transcription cofactor activity;5.28073938546184e-11!GO:0043566;structure-specific DNA binding;5.50616452923903e-11!GO:0017038;protein import;5.63190980839599e-11!GO:0006446;regulation of translational initiation;5.67463017626281e-11!GO:0048193;Golgi vesicle transport;5.76998734459245e-11!GO:0016787;hydrolase activity;6.06616214964188e-11!GO:0009152;purine ribonucleotide biosynthetic process;7.35196293393096e-11!GO:0019787;small conjugating protein ligase activity;8.06141282511168e-11!GO:0006333;chromatin assembly or disassembly;1.0007157269785e-10!GO:0009055;electron carrier activity;1.02119751875225e-10!GO:0003697;single-stranded DNA binding;1.22623522973687e-10!GO:0065004;protein-DNA complex assembly;1.33604845657071e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.46560115724599e-10!GO:0016740;transferase activity;1.71064111093819e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.20403223487847e-10!GO:0005789;endoplasmic reticulum membrane;3.37392382842819e-10!GO:0000775;chromosome, pericentric region;3.90828949359638e-10!GO:0006310;DNA recombination;4.88557641174544e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.11570662662245e-10!GO:0015078;hydrogen ion transmembrane transporter activity;8.94117296511176e-10!GO:0008219;cell death;8.99715786070468e-10!GO:0016265;death;8.99715786070468e-10!GO:0019829;cation-transporting ATPase activity;1.31699595721093e-09!GO:0007005;mitochondrion organization and biogenesis;2.02579218650191e-09!GO:0005819;spindle;2.15780506896106e-09!GO:0030532;small nuclear ribonucleoprotein complex;2.25467473913493e-09!GO:0008565;protein transporter activity;2.48626061223689e-09!GO:0006461;protein complex assembly;2.72008690714094e-09!GO:0051188;cofactor biosynthetic process;2.76381007143657e-09!GO:0016881;acid-amino acid ligase activity;3.12942508465562e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.08752252408495e-09!GO:0009141;nucleoside triphosphate metabolic process;4.99573167626396e-09!GO:0009199;ribonucleoside triphosphate metabolic process;5.285461910765e-09!GO:0045333;cellular respiration;5.35116764091371e-09!GO:0009117;nucleotide metabolic process;6.43550165513521e-09!GO:0009060;aerobic respiration;7.50736792861661e-09!GO:0009142;nucleoside triphosphate biosynthetic process;7.86050756770954e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.86050756770954e-09!GO:0000075;cell cycle checkpoint;9.55359523295264e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.30001203897094e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.30001203897094e-08!GO:0015986;ATP synthesis coupled proton transport;1.70390212334354e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.70390212334354e-08!GO:0003899;DNA-directed RNA polymerase activity;1.80585500103804e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.01727783364161e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.01727783364161e-08!GO:0005657;replication fork;3.32850656316315e-08!GO:0006366;transcription from RNA polymerase II promoter;4.75333383382185e-08!GO:0032446;protein modification by small protein conjugation;5.74359099718872e-08!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.9696343624091e-08!GO:0008094;DNA-dependent ATPase activity;6.37977499147235e-08!GO:0005839;proteasome core complex (sensu Eukaryota);6.40159308817086e-08!GO:0005813;centrosome;7.01078105057227e-08!GO:0016741;transferase activity, transferring one-carbon groups;7.89608648775894e-08!GO:0046034;ATP metabolic process;8.21054472540521e-08!GO:0006752;group transfer coenzyme metabolic process;8.52717530853704e-08!GO:0015630;microtubule cytoskeleton;9.15013559460262e-08!GO:0016567;protein ubiquitination;9.42414576043191e-08!GO:0006754;ATP biosynthetic process;9.70199758608602e-08!GO:0006753;nucleoside phosphate metabolic process;9.70199758608602e-08!GO:0005815;microtubule organizing center;9.85589682525881e-08!GO:0016469;proton-transporting two-sector ATPase complex;9.93379123728623e-08!GO:0006084;acetyl-CoA metabolic process;1.04302823977154e-07!GO:0008168;methyltransferase activity;1.04323490970721e-07!GO:0009108;coenzyme biosynthetic process;1.08812020707587e-07!GO:0008033;tRNA processing;1.12076251760305e-07!GO:0007051;spindle organization and biogenesis;1.23612585942102e-07!GO:0003713;transcription coactivator activity;1.2414398166427e-07!GO:0006793;phosphorus metabolic process;1.30111307216544e-07!GO:0006796;phosphate metabolic process;1.30111307216544e-07!GO:0006099;tricarboxylic acid cycle;1.3321333640841e-07!GO:0046356;acetyl-CoA catabolic process;1.3321333640841e-07!GO:0045259;proton-transporting ATP synthase complex;1.36394596335217e-07!GO:0000245;spliceosome assembly;1.54573188128952e-07!GO:0051325;interphase;1.62455569643879e-07!GO:0004298;threonine endopeptidase activity;1.64569173481347e-07!GO:0051329;interphase of mitotic cell cycle;1.8665185393888e-07!GO:0000151;ubiquitin ligase complex;2.10145723689207e-07!GO:0006302;double-strand break repair;2.29401950529443e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.43539062898518e-07!GO:0051170;nuclear import;2.49825809780786e-07!GO:0016310;phosphorylation;3.30187423444045e-07!GO:0003724;RNA helicase activity;3.67943360823215e-07!GO:0006606;protein import into nucleus;6.28933685362745e-07!GO:0051246;regulation of protein metabolic process;6.71248956022784e-07!GO:0006888;ER to Golgi vesicle-mediated transport;7.76972343028111e-07!GO:0044452;nucleolar part;8.32830720789311e-07!GO:0007059;chromosome segregation;1.04321705982078e-06!GO:0009109;coenzyme catabolic process;1.30351604659402e-06!GO:0006091;generation of precursor metabolites and energy;1.33508146046922e-06!GO:0042981;regulation of apoptosis;1.39023067459025e-06!GO:0006401;RNA catabolic process;1.55797632597503e-06!GO:0043067;regulation of programmed cell death;1.80071901111333e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.84841575986158e-06!GO:0015399;primary active transmembrane transporter activity;1.84841575986158e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.89153648721242e-06!GO:0051168;nuclear export;1.90287326864731e-06!GO:0003690;double-stranded DNA binding;1.97382510169736e-06!GO:0004518;nuclease activity;2.15108242585477e-06!GO:0005762;mitochondrial large ribosomal subunit;2.31750036673305e-06!GO:0000315;organellar large ribosomal subunit;2.31750036673305e-06!GO:0048475;coated membrane;2.32896498272472e-06!GO:0030117;membrane coat;2.32896498272472e-06!GO:0030120;vesicle coat;2.40251339079019e-06!GO:0030662;coated vesicle membrane;2.40251339079019e-06!GO:0031497;chromatin assembly;2.62044366832991e-06!GO:0000314;organellar small ribosomal subunit;2.67335883646128e-06!GO:0005763;mitochondrial small ribosomal subunit;2.67335883646128e-06!GO:0006334;nucleosome assembly;3.40489449375783e-06!GO:0007088;regulation of mitosis;3.47665389797645e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.75477066161289e-06!GO:0009165;nucleotide biosynthetic process;4.24965098934795e-06!GO:0051052;regulation of DNA metabolic process;4.41445911366132e-06!GO:0004527;exonuclease activity;4.69221687034456e-06!GO:0003684;damaged DNA binding;4.6978162012283e-06!GO:0031072;heat shock protein binding;4.73857896347017e-06!GO:0003678;DNA helicase activity;5.45973751025413e-06!GO:0006613;cotranslational protein targeting to membrane;7.06806880902246e-06!GO:0003682;chromatin binding;7.54876192880348e-06!GO:0000776;kinetochore;7.66233846389313e-06!GO:0016192;vesicle-mediated transport;8.04956814219101e-06!GO:0016563;transcription activator activity;9.03411516795505e-06!GO:0006402;mRNA catabolic process;9.87890545010242e-06!GO:0005667;transcription factor complex;1.0031744673129e-05!GO:0030880;RNA polymerase complex;1.01293950242939e-05!GO:0051187;cofactor catabolic process;1.15967574537146e-05!GO:0005794;Golgi apparatus;1.16505210539475e-05!GO:0005793;ER-Golgi intermediate compartment;1.21462082702687e-05!GO:0006520;amino acid metabolic process;2.2996769196066e-05!GO:0006352;transcription initiation;2.65430275417715e-05!GO:0055029;nuclear DNA-directed RNA polymerase complex;2.68723992809706e-05!GO:0000428;DNA-directed RNA polymerase complex;2.68723992809706e-05!GO:0006612;protein targeting to membrane;2.69460434974928e-05!GO:0006626;protein targeting to mitochondrion;2.7180820360328e-05!GO:0043681;protein import into mitochondrion;2.72473243357493e-05!GO:0043623;cellular protein complex assembly;2.80345357406217e-05!GO:0043492;ATPase activity, coupled to movement of substances;3.00641948934443e-05!GO:0019752;carboxylic acid metabolic process;3.03136521541162e-05!GO:0008186;RNA-dependent ATPase activity;3.14909288038009e-05!GO:0019899;enzyme binding;3.27768962927973e-05!GO:0006383;transcription from RNA polymerase III promoter;3.28666688617681e-05!GO:0006082;organic acid metabolic process;3.33308192421387e-05!GO:0016251;general RNA polymerase II transcription factor activity;3.50956573596118e-05!GO:0006839;mitochondrial transport;4.06083242305123e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;4.33980247678484e-05!GO:0007093;mitotic cell cycle checkpoint;4.61441769680857e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;4.77052461668535e-05!GO:0016363;nuclear matrix;5.23806201213703e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;5.71870860698817e-05!GO:0045786;negative regulation of progression through cell cycle;6.77817919387007e-05!GO:0003729;mRNA binding;7.07762363648764e-05!GO:0043021;ribonucleoprotein binding;7.36713897948487e-05!GO:0016853;isomerase activity;7.79052001125416e-05!GO:0009451;RNA modification;9.2908460274592e-05!GO:0032508;DNA duplex unwinding;9.9144444592702e-05!GO:0032392;DNA geometric change;9.9144444592702e-05!GO:0005753;mitochondrial proton-transporting ATP synthase complex;9.9144444592702e-05!GO:0006414;translational elongation;0.000101243153343526!GO:0004004;ATP-dependent RNA helicase activity;0.000101243153343526!GO:0007052;mitotic spindle organization and biogenesis;0.000116238878585796!GO:0006417;regulation of translation;0.000127225298767117!GO:0065009;regulation of a molecular function;0.000135661182654129!GO:0006818;hydrogen transport;0.000146634486740469!GO:0000049;tRNA binding;0.00015556467789191!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000159203039221424!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.000163626865839844!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000171363600730378!GO:0005768;endosome;0.000175484822248086!GO:0031324;negative regulation of cellular metabolic process;0.000190077837307582!GO:0015992;proton transport;0.000193869551693964!GO:0006268;DNA unwinding during replication;0.00019445351661893!GO:0015980;energy derivation by oxidation of organic compounds;0.000197177414939473!GO:0000287;magnesium ion binding;0.000210871356633695!GO:0004674;protein serine/threonine kinase activity;0.000240361407897271!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000250503570505632!GO:0022890;inorganic cation transmembrane transporter activity;0.000280948843124005!GO:0005048;signal sequence binding;0.000285352277605981!GO:0006405;RNA export from nucleus;0.000295946578202422!GO:0016564;transcription repressor activity;0.000343719729416529!GO:0007006;mitochondrial membrane organization and biogenesis;0.000351856213274144!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000351856213274144!GO:0016491;oxidoreductase activity;0.000364202060839979!GO:0003711;transcription elongation regulator activity;0.000381606158076365!GO:0019843;rRNA binding;0.000386249008323763!GO:0005885;Arp2/3 protein complex;0.00038865690813032!GO:0000228;nuclear chromosome;0.000397771381661147!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000442390420272917!GO:0006289;nucleotide-excision repair;0.000466934172393671!GO:0019222;regulation of metabolic process;0.000481631334875928!GO:0032200;telomere organization and biogenesis;0.000514455624175722!GO:0000723;telomere maintenance;0.000514455624175722!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000522198017682172!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000522198017682172!GO:0000059;protein import into nucleus, docking;0.000526689301005927!GO:0031326;regulation of cellular biosynthetic process;0.00053260917712749!GO:0009112;nucleobase metabolic process;0.00053260917712749!GO:0005770;late endosome;0.000571023712268167!GO:0006284;base-excision repair;0.000579834051895804!GO:0050794;regulation of cellular process;0.000590762975873469!GO:0045454;cell redox homeostasis;0.000609318405512061!GO:0043069;negative regulation of programmed cell death;0.000625040353722133!GO:0008276;protein methyltransferase activity;0.000643415878731227!GO:0008408;3'-5' exonuclease activity;0.000653043677399716!GO:0031968;organelle outer membrane;0.000653043677399716!GO:0051539;4 iron, 4 sulfur cluster binding;0.000653627236654608!GO:0051427;hormone receptor binding;0.000668567177580916!GO:0008632;apoptotic program;0.000697462731603752!GO:0046483;heterocycle metabolic process;0.000765160353319616!GO:0043066;negative regulation of apoptosis;0.000770899188597275!GO:0009124;nucleoside monophosphate biosynthetic process;0.000803936005380054!GO:0009123;nucleoside monophosphate metabolic process;0.000803936005380054!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000807605399165271!GO:0019867;outer membrane;0.000820702120446882!GO:0006519;amino acid and derivative metabolic process;0.000824782091529782!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000833898073333251!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000833898073333251!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000833898073333251!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.000864281532679645!GO:0000786;nucleosome;0.0009006597189625!GO:0005876;spindle microtubule;0.00095045352723562!GO:0005684;U2-dependent spliceosome;0.000986055513117526!GO:0031124;mRNA 3'-end processing;0.00105787142511726!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00107223202533584!GO:0006270;DNA replication initiation;0.00107916574203564!GO:0051920;peroxiredoxin activity;0.0011580682847671!GO:0032259;methylation;0.00118600170516!GO:0051252;regulation of RNA metabolic process;0.00120383352124622!GO:0000082;G1/S transition of mitotic cell cycle;0.00120383352124622!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00121726579865734!GO:0035257;nuclear hormone receptor binding;0.00121897071710139!GO:0016859;cis-trans isomerase activity;0.00125562323481108!GO:0004532;exoribonuclease activity;0.00129179626193948!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00129179626193948!GO:0004003;ATP-dependent DNA helicase activity;0.00131058784104699!GO:0043596;nuclear replication fork;0.0013133918909298!GO:0005758;mitochondrial intermembrane space;0.00135691392042691!GO:0043065;positive regulation of apoptosis;0.00135691392042691!GO:0043414;biopolymer methylation;0.00135691392042691!GO:0003746;translation elongation factor activity;0.00138757142789359!GO:0006144;purine base metabolic process;0.00143041342515815!GO:0005669;transcription factor TFIID complex;0.00154807495243044!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.001563746401062!GO:0015002;heme-copper terminal oxidase activity;0.001563746401062!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.001563746401062!GO:0004129;cytochrome-c oxidase activity;0.001563746401062!GO:0009116;nucleoside metabolic process;0.00157301934830122!GO:0030384;phosphoinositide metabolic process;0.00158020466109516!GO:0005741;mitochondrial outer membrane;0.00164072851803494!GO:0009161;ribonucleoside monophosphate metabolic process;0.00164344777481332!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.00164344777481332!GO:0051540;metal cluster binding;0.00164370646183718!GO:0051536;iron-sulfur cluster binding;0.00164370646183718!GO:0008139;nuclear localization sequence binding;0.00165679204189379!GO:0051087;chaperone binding;0.00165902140676339!GO:0016481;negative regulation of transcription;0.00168111172031023!GO:0043068;positive regulation of programmed cell death;0.00168788269932378!GO:0006338;chromatin remodeling;0.00175128125628947!GO:0003714;transcription corepressor activity;0.00180565789722603!GO:0044440;endosomal part;0.00180565789722603!GO:0010008;endosome membrane;0.00180565789722603!GO:0006950;response to stress;0.00181235932120682!GO:0044431;Golgi apparatus part;0.00181843098481112!GO:0006400;tRNA modification;0.00183529647417305!GO:0048523;negative regulation of cellular process;0.00186702835938534!GO:0048500;signal recognition particle;0.00187234918175595!GO:0008654;phospholipid biosynthetic process;0.00187234918175595!GO:0000922;spindle pole;0.00187571230819016!GO:0050662;coenzyme binding;0.00194900448796105!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.001953244239107!GO:0006275;regulation of DNA replication;0.001953244239107!GO:0005773;vacuole;0.001953244239107!GO:0005798;Golgi-associated vesicle;0.0019851753808835!GO:0009889;regulation of biosynthetic process;0.0019851753808835!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00201062689328305!GO:0031570;DNA integrity checkpoint;0.00201062689328305!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0020767771785219!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00220780648995029!GO:0015631;tubulin binding;0.00225720307094548!GO:0008312;7S RNA binding;0.00231434110326718!GO:0031123;RNA 3'-end processing;0.00234593148173077!GO:0008234;cysteine-type peptidase activity;0.00248955968469403!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00250990876616274!GO:0000725;recombinational repair;0.00253640400589104!GO:0000724;double-strand break repair via homologous recombination;0.00253640400589104!GO:0016272;prefoldin complex;0.00254980349511482!GO:0030658;transport vesicle membrane;0.00255915948459684!GO:0006611;protein export from nucleus;0.00259693509735048!GO:0003887;DNA-directed DNA polymerase activity;0.00262780326586741!GO:0006916;anti-apoptosis;0.00266812585012665!GO:0019783;small conjugating protein-specific protease activity;0.00276139974710798!GO:0047485;protein N-terminus binding;0.0028097074241243!GO:0000781;chromosome, telomeric region;0.00283153743878929!GO:0000819;sister chromatid segregation;0.00283303843070312!GO:0006891;intra-Golgi vesicle-mediated transport;0.00289203230015926!GO:0006007;glucose catabolic process;0.00298880128634163!GO:0000726;non-recombinational repair;0.00308696554773341!GO:0042393;histone binding;0.00310960614774606!GO:0000070;mitotic sister chromatid segregation;0.00324239874405956!GO:0000096;sulfur amino acid metabolic process;0.00325840037093242!GO:0006650;glycerophospholipid metabolic process;0.00337064933421688!GO:0016126;sterol biosynthetic process;0.00339346515591511!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00358584702758467!GO:0043284;biopolymer biosynthetic process;0.00358584702758467!GO:0000178;exosome (RNase complex);0.00362527416819974!GO:0004843;ubiquitin-specific protease activity;0.00370558718923892!GO:0000323;lytic vacuole;0.0037917014498343!GO:0005764;lysosome;0.0037917014498343!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00381636212283829!GO:0045047;protein targeting to ER;0.00381636212283829!GO:0031323;regulation of cellular metabolic process;0.00390732878755322!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00395486579167419!GO:0031970;organelle envelope lumen;0.00413746769300101!GO:0006730;one-carbon compound metabolic process;0.00424949486071387!GO:0050790;regulation of catalytic activity;0.00427028651021482!GO:0030660;Golgi-associated vesicle membrane;0.0044451206970971!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00453695368037211!GO:0044454;nuclear chromosome part;0.004606953770063!GO:0046112;nucleobase biosynthetic process;0.00469233782163809!GO:0006595;polyamine metabolic process;0.00473417680470836!GO:0031647;regulation of protein stability;0.00477843786796115!GO:0000152;nuclear ubiquitin ligase complex;0.0049121352187399!GO:0000339;RNA cap binding;0.0049824838904042!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00513169324287556!GO:0000793;condensed chromosome;0.00515305174094775!GO:0005769;early endosome;0.00521230547983809!GO:0016197;endosome transport;0.00558532671270872!GO:0043022;ribosome binding;0.005628108771614!GO:0044450;microtubule organizing center part;0.005628108771614!GO:0006220;pyrimidine nucleotide metabolic process;0.00565782386201774!GO:0009892;negative regulation of metabolic process;0.00610211803507006!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00612011021167697!GO:0005788;endoplasmic reticulum lumen;0.00619049021434944!GO:0004221;ubiquitin thiolesterase activity;0.00625534094209458!GO:0006740;NADPH regeneration;0.00638682794324843!GO:0006098;pentose-phosphate shunt;0.00638682794324843!GO:0009081;branched chain family amino acid metabolic process;0.00648355270242116!GO:0006378;mRNA polyadenylation;0.00663249083125078!GO:0046474;glycerophospholipid biosynthetic process;0.0066885231349692!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00692887935137253!GO:0000077;DNA damage checkpoint;0.0069500877961719!GO:0046489;phosphoinositide biosynthetic process;0.00706537506440382!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.00706537506440382!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.00706537506440382!GO:0009126;purine nucleoside monophosphate metabolic process;0.00706537506440382!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.00706537506440382!GO:0048471;perinuclear region of cytoplasm;0.00714823099986384!GO:0030663;COPI coated vesicle membrane;0.00715840554720504!GO:0030126;COPI vesicle coat;0.00715840554720504!GO:0043488;regulation of mRNA stability;0.0071861890750962!GO:0043487;regulation of RNA stability;0.0071861890750962!GO:0006917;induction of apoptosis;0.00745062009438!GO:0005637;nuclear inner membrane;0.00753131328643348!GO:0043601;nuclear replisome;0.00755710199981038!GO:0030894;replisome;0.00755710199981038!GO:0006118;electron transport;0.00756143135883858!GO:0006695;cholesterol biosynthetic process;0.00765329375840113!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00770455659035004!GO:0000175;3'-5'-exoribonuclease activity;0.00770455659035004!GO:0031577;spindle checkpoint;0.00786360404729496!GO:0042770;DNA damage response, signal transduction;0.00798063929008801!GO:0008180;signalosome;0.00798280175243845!GO:0016584;nucleosome positioning;0.00807659850936688!GO:0005832;chaperonin-containing T-complex;0.00811290796151683!GO:0048037;cofactor binding;0.00822606052362523!GO:0003725;double-stranded RNA binding;0.00847127992502279!GO:0030118;clathrin coat;0.00855704165961629!GO:0007050;cell cycle arrest;0.00859908190042138!GO:0008652;amino acid biosynthetic process;0.00875973834975341!GO:0004536;deoxyribonuclease activity;0.00891242457094832!GO:0042054;histone methyltransferase activity;0.00894452405706656!GO:0009308;amine metabolic process;0.0090040300816395!GO:0016790;thiolester hydrolase activity;0.00929500956943756!GO:0012502;induction of programmed cell death;0.00937847680111868!GO:0030867;rough endoplasmic reticulum membrane;0.00958484723784741!GO:0030134;ER to Golgi transport vesicle;0.00970993285190313!GO:0009067;aspartate family amino acid biosynthetic process;0.00970993285190313!GO:0009303;rRNA transcription;0.00983145123551165!GO:0048519;negative regulation of biological process;0.0104236461456086!GO:0000097;sulfur amino acid biosynthetic process;0.0105422891704321!GO:0033116;ER-Golgi intermediate compartment membrane;0.0105422891704321!GO:0043189;H4/H2A histone acetyltransferase complex;0.0105607720332891!GO:0022406;membrane docking;0.0110483547319436!GO:0048278;vesicle docking;0.0110483547319436!GO:0008097;5S rRNA binding;0.0111469111848855!GO:0030137;COPI-coated vesicle;0.0112121370223892!GO:0006350;transcription;0.0112813304433437!GO:0030433;ER-associated protein catabolic process;0.0113315746275153!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0113315746275153!GO:0042113;B cell activation;0.0115644794968806!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0121269787673633!GO:0035258;steroid hormone receptor binding;0.0122556005241256!GO:0051053;negative regulation of DNA metabolic process;0.0123035188690565!GO:0035267;NuA4 histone acetyltransferase complex;0.0123444039981421!GO:0006807;nitrogen compound metabolic process;0.012373162229927!GO:0006607;NLS-bearing substrate import into nucleus;0.0125864723986328!GO:0000018;regulation of DNA recombination;0.0127129366239658!GO:0000119;mediator complex;0.0127129366239658!GO:0022415;viral reproductive process;0.012877526859651!GO:0030518;steroid hormone receptor signaling pathway;0.0129692240951453!GO:0016408;C-acyltransferase activity;0.0130213439502566!GO:0007004;telomere maintenance via telomerase;0.0133595989095387!GO:0042613;MHC class II protein complex;0.0133595989095387!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0134864371930286!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0135196822984511!GO:0030521;androgen receptor signaling pathway;0.0135466848786165!GO:0007021;tubulin folding;0.0135486358940255!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0135646759204797!GO:0048487;beta-tubulin binding;0.0135646759204797!GO:0030127;COPII vesicle coat;0.0135646759204797!GO:0012507;ER to Golgi transport vesicle membrane;0.0135646759204797!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0136397755877632!GO:0000209;protein polyubiquitination;0.0136397755877632!GO:0000792;heterochromatin;0.013703952433899!GO:0000139;Golgi membrane;0.0138976905129345!GO:0016407;acetyltransferase activity;0.0140127766557691!GO:0016279;protein-lysine N-methyltransferase activity;0.0141453953276072!GO:0018024;histone-lysine N-methyltransferase activity;0.0141453953276072!GO:0016278;lysine N-methyltransferase activity;0.0141453953276072!GO:0004576;oligosaccharyl transferase activity;0.014401481126513!GO:0046365;monosaccharide catabolic process;0.0147473596386716!GO:0007243;protein kinase cascade;0.0156897956314122!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0163228082256576!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0163228082256576!GO:0006904;vesicle docking during exocytosis;0.0167378716142127!GO:0004540;ribonuclease activity;0.0168823025381822!GO:0043624;cellular protein complex disassembly;0.0169481336184906!GO:0007017;microtubule-based process;0.0172737337585256!GO:0006406;mRNA export from nucleus;0.0172737337585256!GO:0008017;microtubule binding;0.0173516764581094!GO:0046164;alcohol catabolic process;0.0174845186185249!GO:0008610;lipid biosynthetic process;0.017751151449927!GO:0016788;hydrolase activity, acting on ester bonds;0.0185638326511708!GO:0031625;ubiquitin protein ligase binding;0.0185757983563434!GO:0051320;S phase;0.018721741509476!GO:0030145;manganese ion binding;0.0188165820912049!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0189547361415995!GO:0045039;protein import into mitochondrial inner membrane;0.0189547361415995!GO:0008538;proteasome activator activity;0.0196149223120831!GO:0022411;cellular component disassembly;0.0198531626412407!GO:0006096;glycolysis;0.020500917558242!GO:0006376;mRNA splice site selection;0.0206077371674121!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0206077371674121!GO:0045045;secretory pathway;0.0207670706803946!GO:0006278;RNA-dependent DNA replication;0.0212619784869779!GO:0003756;protein disulfide isomerase activity;0.0212619784869779!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0212619784869779!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0217438773539024!GO:0000123;histone acetyltransferase complex;0.0219591592561642!GO:0005680;anaphase-promoting complex;0.0221492546993952!GO:0051235;maintenance of localization;0.0222421684905217!GO:0000738;DNA catabolic process, exonucleolytic;0.0225540062950495!GO:0006303;double-strand break repair via nonhomologous end joining;0.022663771187484!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.022687314786265!GO:0045120;pronucleus;0.0231484446618139!GO:0044262;cellular carbohydrate metabolic process;0.0231587496250708!GO:0008250;oligosaccharyl transferase complex;0.0236170465438545!GO:0005874;microtubule;0.0236176977986687!GO:0009615;response to virus;0.0236575899417201!GO:0005663;DNA replication factor C complex;0.0236575899417201!GO:0019320;hexose catabolic process;0.0238619627544354!GO:0030176;integral to endoplasmic reticulum membrane;0.0238981998954317!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0241301937429835!GO:0018193;peptidyl-amino acid modification;0.024351055774915!GO:0008287;protein serine/threonine phosphatase complex;0.0245546899507537!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0246005761570727!GO:0000910;cytokinesis;0.0250446033414002!GO:0040029;regulation of gene expression, epigenetic;0.0251936820013042!GO:0006266;DNA ligation;0.0254585256027645!GO:0006301;postreplication repair;0.0256441243948735!GO:0045792;negative regulation of cell size;0.0259274391184982!GO:0043631;RNA polyadenylation;0.0262735775224153!GO:0000118;histone deacetylase complex;0.0262997436071327!GO:0051789;response to protein stimulus;0.0265652034373882!GO:0006986;response to unfolded protein;0.0265652034373882!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.026855890639689!GO:0009262;deoxyribonucleotide metabolic process;0.0269411099003694!GO:0001522;pseudouridine synthesis;0.0285386836848347!GO:0008022;protein C-terminus binding;0.0285386836848347!GO:0009396;folic acid and derivative biosynthetic process;0.0285864354337395!GO:0046822;regulation of nucleocytoplasmic transport;0.028719343948651!GO:0008320;protein transmembrane transporter activity;0.0288555016880723!GO:0008173;RNA methyltransferase activity;0.0289122955100099!GO:0009083;branched chain family amino acid catabolic process;0.028956102556587!GO:0043130;ubiquitin binding;0.0291029503918261!GO:0032182;small conjugating protein binding;0.0291029503918261!GO:0032404;mismatch repair complex binding;0.0292880287499174!GO:0006733;oxidoreduction coenzyme metabolic process;0.0294460373573865!GO:0008159;positive transcription elongation factor activity;0.0294460373573865!GO:0005774;vacuolar membrane;0.0298204712576901!GO:0009066;aspartate family amino acid metabolic process;0.0300901029413443!GO:0051287;NAD binding;0.0303729702529806!GO:0009113;purine base biosynthetic process;0.0306588575056394!GO:0006415;translational termination;0.0306588575056394!GO:0003924;GTPase activity;0.0306735145750889!GO:0032984;macromolecular complex disassembly;0.0308074020230596!GO:0008213;protein amino acid alkylation;0.0310790637376823!GO:0006479;protein amino acid methylation;0.0310790637376823!GO:0004520;endodeoxyribonuclease activity;0.0316276682128333!GO:0008170;N-methyltransferase activity;0.0317797523074646!GO:0051656;establishment of organelle localization;0.0317802113701971!GO:0042802;identical protein binding;0.0319872447498971!GO:0030125;clathrin vesicle coat;0.0319872447498971!GO:0030665;clathrin coated vesicle membrane;0.0319872447498971!GO:0032039;integrator complex;0.0323739818771746!GO:0030308;negative regulation of cell growth;0.0323739818771746!GO:0005784;translocon complex;0.0323739818771746!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0323739818771746!GO:0010257;NADH dehydrogenase complex assembly;0.0323739818771746!GO:0033108;mitochondrial respiratory chain complex assembly;0.0323739818771746!GO:0005732;small nucleolar ribonucleoprotein complex;0.0324380634726116!GO:0008299;isoprenoid biosynthetic process;0.0328650368101888!GO:0016569;covalent chromatin modification;0.0343692558249024!GO:0045892;negative regulation of transcription, DNA-dependent;0.0345278111892284!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0349361926263351!GO:0019079;viral genome replication;0.0349473558210857!GO:0045815;positive regulation of gene expression, epigenetic;0.0350564780454874!GO:0051059;NF-kappaB binding;0.0351008983074174!GO:0006596;polyamine biosynthetic process;0.0354246251487362!GO:0030119;AP-type membrane coat adaptor complex;0.0356750658192405!GO:0030508;thiol-disulfide exchange intermediate activity;0.0358945237974893!GO:0030496;midbody;0.0359344364373417!GO:0015036;disulfide oxidoreductase activity;0.0366466723286287!GO:0043241;protein complex disassembly;0.0371235970819188!GO:0032507;maintenance of cellular protein localization;0.0374551860668984!GO:0005666;DNA-directed RNA polymerase III complex;0.0374747140853251!GO:0022884;macromolecule transmembrane transporter activity;0.0376929498155906!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0376929498155906!GO:0042769;DNA damage response, detection of DNA damage;0.037731247791461!GO:0008537;proteasome activator complex;0.0377702013501353!GO:0006379;mRNA cleavage;0.0378280359679374!GO:0004722;protein serine/threonine phosphatase activity;0.0379329755780442!GO:0016585;chromatin remodeling complex;0.038168539998847!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0383616661577819!GO:0000930;gamma-tubulin complex;0.0387039241385193!GO:0043549;regulation of kinase activity;0.0391624030547171!GO:0001832;blastocyst growth;0.039223356489222!GO:0019058;viral infectious cycle;0.0394257303736983!GO:0043087;regulation of GTPase activity;0.0395222470966158!GO:0006308;DNA catabolic process;0.0396343660213092!GO:0004239;methionyl aminopeptidase activity;0.0397775612116219!GO:0005869;dynactin complex;0.0400198714265191!GO:0005092;GDP-dissociation inhibitor activity;0.0402771029813145!GO:0003677;DNA binding;0.0403146903878446!GO:0016417;S-acyltransferase activity;0.0406517547183415!GO:0004523;ribonuclease H activity;0.0407305048827195!GO:0004177;aminopeptidase activity;0.0409876303221501!GO:0019318;hexose metabolic process;0.0413792391047256!GO:0051338;regulation of transferase activity;0.0416977553981916!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0417008540337255!GO:0004448;isocitrate dehydrogenase activity;0.0417008540337255!GO:0051297;centrosome organization and biogenesis;0.0417008540337255!GO:0031023;microtubule organizing center organization and biogenesis;0.0417008540337255!GO:0006518;peptide metabolic process;0.0418535320954568!GO:0004815;aspartate-tRNA ligase activity;0.0421968374847333!GO:0006422;aspartyl-tRNA aminoacylation;0.0421968374847333!GO:0051640;organelle localization;0.0425650256175068!GO:0008156;negative regulation of DNA replication;0.0427192018098725!GO:0010468;regulation of gene expression;0.042828443021217!GO:0030041;actin filament polymerization;0.0436267270508606!GO:0006779;porphyrin biosynthetic process;0.0442855319581195!GO:0033014;tetrapyrrole biosynthetic process;0.0442855319581195!GO:0030258;lipid modification;0.0443925058515493!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0443925058515493!GO:0046128;purine ribonucleoside metabolic process;0.0443925058515493!GO:0042278;purine nucleoside metabolic process;0.0443925058515493!GO:0019238;cyclohydrolase activity;0.0447352533202717!GO:0008637;apoptotic mitochondrial changes;0.044828602978769!GO:0030522;intracellular receptor-mediated signaling pathway;0.0454289627839617!GO:0001891;phagocytic cup;0.0460638239047271!GO:0008536;Ran GTPase binding;0.0461401235032977!GO:0006541;glutamine metabolic process;0.0461720636667223!GO:0031371;ubiquitin conjugating enzyme complex;0.0467962842140567!GO:0032395;MHC class II receptor activity;0.0471649240398129!GO:0051223;regulation of protein transport;0.0472039963269773!GO:0044437;vacuolar part;0.0473405134948401!GO:0005525;GTP binding;0.0478485648898297!GO:0050851;antigen receptor-mediated signaling pathway;0.0481488817593851!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0489407652986524!GO:0050789;regulation of biological process;0.0497014761582911!GO:0042809;vitamin D receptor binding;0.0499336338021652 | |||
|sample_id=10476 | |sample_id=10476 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=PDX1:2.46618115465;ZBTB16:2.39935586908;PITX1..3:2.38251549641;POU5F1:2.29138366219;FOXA2:2.1426932976;POU1F1:2.02565289504;POU2F1..3:2.00139918827;MYB:1.94372338078;AIRE:1.89590336802;CDX1,2,4:1.8848233308;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.87527777017;YY1:1.8198953726;FOXP1:1.76151220439;NKX6-1,2:1.73712597937;TOPORS:1.67863391725;E2F1..5:1.67853822441;BREu{core}:1.56008914089;FOXP3:1.53188376277;NFY{A,B,C}:1.53045952677;PBX1:1.40031300447;NRF1:1.26580678466;FOX{I1,J2}:1.26176906128;HOXA9_MEIS1:1.21342870758;ZNF143:1.21326944542;VSX1,2:1.20026432152;ELK1,4_GABP{A,B1}:1.07246908021;ELF1,2,4:1.04447050019;PAX6:1.00714123081;NKX2-1,4:1.00669831198;NR5A1,2:0.973314628875;DMAP1_NCOR{1,2}_SMARC:0.791098910492;OCT4_SOX2{dimer}:0.779017077593;PAX3,7:0.759333829052;FOX{F1,F2,J1}:0.744771413137;bHLH_family:0.698625406634;NFKB1_REL_RELA:0.690203745421;RUNX1..3:0.687467013944;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.68255360303;FOXQ1:0.674702377343;AHR_ARNT_ARNT2:0.633628605529;TEF:0.626760027502;IKZF2:0.612206478738;POU3F1..4:0.542460759812;ZEB1:0.459658679826;PAX4:0.457581690812;NKX2-2,8:0.452420995792;SPIB:0.451852811478;HIF1A:0.447201760856;TLX2:0.428895995246;CDC5L:0.422426365764;CUX2:0.420352882231;EVI1:0.420325336762;HOX{A6,A7,B6,B7}:0.395676260076;ALX1:0.381381705225;BPTF:0.376335002739;GFI1:0.373224159194;DBP:0.3610029997;GATA6:0.355250472195;HMGA1,2:0.344277838148;SPI1:0.339449395385;ATF4:0.295579093757;IRF1,2:0.28306583555;LMO2:0.281155593777;RFX2..5_RFXANK_RFXAP:0.275802334096;ATF5_CREB3:0.267383335709;SNAI1..3:0.267332083801;NKX3-2:0.255187661787;PPARG:0.242887895332;ZNF384:0.240867975291;TFDP1:0.217023273253;HOX{A4,D4}:0.216888353456;CRX:0.190670632864;NFIX:0.152860766409;RORA:0.106541524664;SOX17:0.097446215247;ARID5B:0.0885566321555;ESRRA:0.0698973694858;CREB1:0.0569137433013;ESR1:0.0521787722649;MYOD1:0.0475957886891;HOX{A5,B5}:0.0457942779039;HAND1,2:0.0247872724362;PRRX1,2:0.016778815517;RBPJ:0.0103678175903;ADNP_IRX_SIX_ZHX:0.00249256562163;TGIF1:-0.00185863996614;ETS1,2:-0.00398173240581;RXRA_VDR{dimer}:-0.00584707143131;T:-0.0205384653418;NKX3-1:-0.0339642074351;FOXO1,3,4:-0.0418252867489;FOXM1:-0.0606400976627;HES1:-0.0705327140253;RFX1:-0.0961509714431;EN1,2:-0.146048127393;IRF7:-0.149547744895;SOX5:-0.173364943878;HNF4A_NR2F1,2:-0.176700678049;HBP1_HMGB_SSRP1_UBTF:-0.188629425844;FOXN1:-0.205041306599;PAX8:-0.210321642047;AR:-0.223153778526;LEF1_TCF7_TCF7L1,2:-0.239870562588;GATA4:-0.244072414914;NANOG:-0.285562825831;SOX{8,9,10}:-0.295881077912;HNF1A:-0.30515005838;TP53:-0.310635362304;CEBPA,B_DDIT3:-0.319104678789;MYBL2:-0.358141338058;PAX2:-0.364294742475;NR1H4:-0.381619338801;NR6A1:-0.391429066712;ZFP161:-0.406081212244;MEF2{A,B,C,D}:-0.428508169053;RXR{A,B,G}:-0.428619392201;STAT5{A,B}:-0.431011943812;ONECUT1,2:-0.445428815844;HSF1,2:-0.45163560167;ALX4:-0.46221049682;FOXD3:-0.473730312674;NFIL3:-0.523722994957;FOSL2:-0.579000473374;NKX2-3_NKX2-5:-0.579180264327;UFEwm:-0.588526740273;NFE2:-0.612632204845;SREBF1,2:-0.613914226939;FOX{D1,D2}:-0.614148305756;MYFfamily:-0.627679574461;POU6F1:-0.63379616411;LHX3,4:-0.674211330101;FOS_FOS{B,L1}_JUN{B,D}:-0.679204856698;BACH2:-0.679990510842;SPZ1:-0.69239898491;SMAD1..7,9:-0.699981994874;KLF4:-0.724287482099;NFATC1..3:-0.739817005445;PRDM1:-0.744057119307;NANOG{mouse}:-0.758294256517;ZNF148:-0.761731416956;GZF1:-0.762033010278;PAX1,9:-0.844109741218;NHLH1,2:-0.853398475758;HLF:-0.900871737622;SOX2:-0.90173917865;JUN:-0.916978036132;TAL1_TCF{3,4,12}:-1.000179307;EBF1:-1.0185209938;IKZF1:-1.02771485768;NFE2L2:-1.02976113439;ATF2:-1.08669862901;RREB1:-1.09956465956;HMX1:-1.10815599615;ZIC1..3:-1.11848704798;GCM1,2:-1.15962036287;STAT2,4,6:-1.17884045425;REST:-1.18716045988;TBX4,5:-1.23431513607;MZF1:-1.28711144286;FOXL1:-1.30372826322;SRF:-1.30480889535;TBP:-1.30918804265;GFI1B:-1.3372115873;NFE2L1:-1.37952147276;HIC1:-1.4069522828;ZBTB6:-1.42145702594;ATF6:-1.42321267646;MED-1{core}:-1.42492315645;GTF2A1,2:-1.4317599986;MAFB:-1.45580315508;STAT1,3:-1.46431135472;EP300:-1.49459700134;ZNF238:-1.50186631656;PAX5:-1.51522619858;XBP1:-1.524312373;NR3C1:-1.58021835687;TEAD1:-1.59641576657;TFAP4:-1.63241825745;PATZ1:-1.65297589944;GTF2I:-1.67132326996;MTF1:-1.69378098304;MAZ:-1.71330416538;SP1:-1.78871164001;MTE{core}:-1.81584481288;ZNF423:-1.82070000212;XCPE1{core}:-1.86411014935;GLI1..3:-1.98624078256;EGR1..3:-1.98728386399;TLX1..3_NFIC{dimer}:-2.02348333702;TFAP2B:-2.05855256751;TFCP2:-2.12923428182;TFAP2{A,C}:-2.19102136801 | |top_motifs=PDX1:2.46618115465;ZBTB16:2.39935586908;PITX1..3:2.38251549641;POU5F1:2.29138366219;FOXA2:2.1426932976;POU1F1:2.02565289504;POU2F1..3:2.00139918827;MYB:1.94372338078;AIRE:1.89590336802;CDX1,2,4:1.8848233308;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.87527777017;YY1:1.8198953726;FOXP1:1.76151220439;NKX6-1,2:1.73712597937;TOPORS:1.67863391725;E2F1..5:1.67853822441;BREu{core}:1.56008914089;FOXP3:1.53188376277;NFY{A,B,C}:1.53045952677;PBX1:1.40031300447;NRF1:1.26580678466;FOX{I1,J2}:1.26176906128;HOXA9_MEIS1:1.21342870758;ZNF143:1.21326944542;VSX1,2:1.20026432152;ELK1,4_GABP{A,B1}:1.07246908021;ELF1,2,4:1.04447050019;PAX6:1.00714123081;NKX2-1,4:1.00669831198;NR5A1,2:0.973314628875;DMAP1_NCOR{1,2}_SMARC:0.791098910492;OCT4_SOX2{dimer}:0.779017077593;PAX3,7:0.759333829052;FOX{F1,F2,J1}:0.744771413137;bHLH_family:0.698625406634;NFKB1_REL_RELA:0.690203745421;RUNX1..3:0.687467013944;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.68255360303;FOXQ1:0.674702377343;AHR_ARNT_ARNT2:0.633628605529;TEF:0.626760027502;IKZF2:0.612206478738;POU3F1..4:0.542460759812;ZEB1:0.459658679826;PAX4:0.457581690812;NKX2-2,8:0.452420995792;SPIB:0.451852811478;HIF1A:0.447201760856;TLX2:0.428895995246;CDC5L:0.422426365764;CUX2:0.420352882231;EVI1:0.420325336762;HOX{A6,A7,B6,B7}:0.395676260076;ALX1:0.381381705225;BPTF:0.376335002739;GFI1:0.373224159194;DBP:0.3610029997;GATA6:0.355250472195;HMGA1,2:0.344277838148;SPI1:0.339449395385;ATF4:0.295579093757;IRF1,2:0.28306583555;LMO2:0.281155593777;RFX2..5_RFXANK_RFXAP:0.275802334096;ATF5_CREB3:0.267383335709;SNAI1..3:0.267332083801;NKX3-2:0.255187661787;PPARG:0.242887895332;ZNF384:0.240867975291;TFDP1:0.217023273253;HOX{A4,D4}:0.216888353456;CRX:0.190670632864;NFIX:0.152860766409;RORA:0.106541524664;SOX17:0.097446215247;ARID5B:0.0885566321555;ESRRA:0.0698973694858;CREB1:0.0569137433013;ESR1:0.0521787722649;MYOD1:0.0475957886891;HOX{A5,B5}:0.0457942779039;HAND1,2:0.0247872724362;PRRX1,2:0.016778815517;RBPJ:0.0103678175903;ADNP_IRX_SIX_ZHX:0.00249256562163;TGIF1:-0.00185863996614;ETS1,2:-0.00398173240581;RXRA_VDR{dimer}:-0.00584707143131;T:-0.0205384653418;NKX3-1:-0.0339642074351;FOXO1,3,4:-0.0418252867489;FOXM1:-0.0606400976627;HES1:-0.0705327140253;RFX1:-0.0961509714431;EN1,2:-0.146048127393;IRF7:-0.149547744895;SOX5:-0.173364943878;HNF4A_NR2F1,2:-0.176700678049;HBP1_HMGB_SSRP1_UBTF:-0.188629425844;FOXN1:-0.205041306599;PAX8:-0.210321642047;AR:-0.223153778526;LEF1_TCF7_TCF7L1,2:-0.239870562588;GATA4:-0.244072414914;NANOG:-0.285562825831;SOX{8,9,10}:-0.295881077912;HNF1A:-0.30515005838;TP53:-0.310635362304;CEBPA,B_DDIT3:-0.319104678789;MYBL2:-0.358141338058;PAX2:-0.364294742475;NR1H4:-0.381619338801;NR6A1:-0.391429066712;ZFP161:-0.406081212244;MEF2{A,B,C,D}:-0.428508169053;RXR{A,B,G}:-0.428619392201;STAT5{A,B}:-0.431011943812;ONECUT1,2:-0.445428815844;HSF1,2:-0.45163560167;ALX4:-0.46221049682;FOXD3:-0.473730312674;NFIL3:-0.523722994957;FOSL2:-0.579000473374;NKX2-3_NKX2-5:-0.579180264327;UFEwm:-0.588526740273;NFE2:-0.612632204845;SREBF1,2:-0.613914226939;FOX{D1,D2}:-0.614148305756;MYFfamily:-0.627679574461;POU6F1:-0.63379616411;LHX3,4:-0.674211330101;FOS_FOS{B,L1}_JUN{B,D}:-0.679204856698;BACH2:-0.679990510842;SPZ1:-0.69239898491;SMAD1..7,9:-0.699981994874;KLF4:-0.724287482099;NFATC1..3:-0.739817005445;PRDM1:-0.744057119307;NANOG{mouse}:-0.758294256517;ZNF148:-0.761731416956;GZF1:-0.762033010278;PAX1,9:-0.844109741218;NHLH1,2:-0.853398475758;HLF:-0.900871737622;SOX2:-0.90173917865;JUN:-0.916978036132;TAL1_TCF{3,4,12}:-1.000179307;EBF1:-1.0185209938;IKZF1:-1.02771485768;NFE2L2:-1.02976113439;ATF2:-1.08669862901;RREB1:-1.09956465956;HMX1:-1.10815599615;ZIC1..3:-1.11848704798;GCM1,2:-1.15962036287;STAT2,4,6:-1.17884045425;REST:-1.18716045988;TBX4,5:-1.23431513607;MZF1:-1.28711144286;FOXL1:-1.30372826322;SRF:-1.30480889535;TBP:-1.30918804265;GFI1B:-1.3372115873;NFE2L1:-1.37952147276;HIC1:-1.4069522828;ZBTB6:-1.42145702594;ATF6:-1.42321267646;MED-1{core}:-1.42492315645;GTF2A1,2:-1.4317599986;MAFB:-1.45580315508;STAT1,3:-1.46431135472;EP300:-1.49459700134;ZNF238:-1.50186631656;PAX5:-1.51522619858;XBP1:-1.524312373;NR3C1:-1.58021835687;TEAD1:-1.59641576657;TFAP4:-1.63241825745;PATZ1:-1.65297589944;GTF2I:-1.67132326996;MTF1:-1.69378098304;MAZ:-1.71330416538;SP1:-1.78871164001;MTE{core}:-1.81584481288;ZNF423:-1.82070000212;XCPE1{core}:-1.86411014935;GLI1..3:-1.98624078256;EGR1..3:-1.98728386399;TLX1..3_NFIC{dimer}:-2.02348333702;TFAP2B:-2.05855256751;TFCP2:-2.12923428182;TFAP2{A,C}:-2.19102136801 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10476-106I8;search_select_hide=table117:FF:10476-106I8 | |||
}} | }} | ||
Latest revision as of 14:26, 3 June 2020
| Name: | Burkitt's lymphoma cell line:RAJI |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11268 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11268
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11268
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0119 |
| 10 | 10 | 0.013 |
| 100 | 100 | 0.123 |
| 101 | 101 | 0.0699 |
| 102 | 102 | 0.434 |
| 103 | 103 | 0.515 |
| 104 | 104 | 0.81 |
| 105 | 105 | 0.876 |
| 106 | 106 | 0.427 |
| 107 | 107 | 0.351 |
| 108 | 108 | 0.984 |
| 109 | 109 | 0.244 |
| 11 | 11 | 0.0847 |
| 110 | 110 | 0.179 |
| 111 | 111 | 0.02 |
| 112 | 112 | 0.512 |
| 113 | 113 | 0.715 |
| 114 | 114 | 0.383 |
| 115 | 115 | 0.857 |
| 116 | 116 | 0.786 |
| 117 | 117 | 0.0117 |
| 118 | 118 | 0.216 |
| 119 | 119 | 0.101 |
| 12 | 12 | 0.957 |
| 120 | 120 | 0.691 |
| 121 | 121 | 0.683 |
| 122 | 122 | 0.817 |
| 123 | 123 | 1.0331e-4 |
| 124 | 124 | 0.189 |
| 125 | 125 | 0.032 |
| 126 | 126 | 0.339 |
| 127 | 127 | 0.765 |
| 128 | 128 | 0.201 |
| 129 | 129 | 0.901 |
| 13 | 13 | 0.0917 |
| 130 | 130 | 0.774 |
| 131 | 131 | 0.159 |
| 132 | 132 | 0.41 |
| 133 | 133 | 0.524 |
| 134 | 134 | 0.708 |
| 135 | 135 | 0.966 |
| 136 | 136 | 0.493 |
| 137 | 137 | 0.345 |
| 138 | 138 | 0.744 |
| 139 | 139 | 0.342 |
| 14 | 14 | 0.7 |
| 140 | 140 | 0.402 |
| 141 | 141 | 0.301 |
| 142 | 142 | 0.171 |
| 143 | 143 | 0.411 |
| 144 | 144 | 0.729 |
| 145 | 145 | 0.116 |
| 146 | 146 | 0.961 |
| 147 | 147 | 0.499 |
| 148 | 148 | 0.38 |
| 149 | 149 | 0.36 |
| 15 | 15 | 0.239 |
| 150 | 150 | 0.844 |
| 151 | 151 | 0.78 |
| 152 | 152 | 0.0148 |
| 153 | 153 | 0.713 |
| 154 | 154 | 0.703 |
| 155 | 155 | 0.0245 |
| 156 | 156 | 0.735 |
| 157 | 157 | 0.155 |
| 158 | 158 | 0.3 |
| 159 | 159 | 0.676 |
| 16 | 16 | 0.904 |
| 160 | 160 | 0.483 |
| 161 | 161 | 0.0588 |
| 162 | 162 | 0.798 |
| 163 | 163 | 0.499 |
| 164 | 164 | 0.226 |
| 165 | 165 | 0.755 |
| 166 | 166 | 0.583 |
| 167 | 167 | 0.0458 |
| 168 | 168 | 0.461 |
| 169 | 169 | 0.786 |
| 17 | 17 | 0.718 |
| 18 | 18 | 0.572 |
| 19 | 19 | 0.819 |
| 2 | 2 | 0.38 |
| 20 | 20 | 0.295 |
| 21 | 21 | 0.137 |
| 22 | 22 | 0.594 |
| 23 | 23 | 0.158 |
| 24 | 24 | 0.815 |
| 25 | 25 | 0.158 |
| 26 | 26 | 0.0405 |
| 27 | 27 | 0.983 |
| 28 | 28 | 0.443 |
| 29 | 29 | 0.0202 |
| 3 | 3 | 0.148 |
| 30 | 30 | 0.0625 |
| 31 | 31 | 0.874 |
| 32 | 32 | 0.57 |
| 33 | 33 | 0.987 |
| 34 | 34 | 0.39 |
| 35 | 35 | 0.174 |
| 36 | 36 | 0.048 |
| 37 | 37 | 0.554 |
| 38 | 38 | 0.729 |
| 39 | 39 | 0.52 |
| 4 | 4 | 0.426 |
| 40 | 40 | 0.284 |
| 41 | 41 | 0.743 |
| 42 | 42 | 0.146 |
| 43 | 43 | 0.456 |
| 44 | 44 | 0.473 |
| 45 | 45 | 0.236 |
| 46 | 46 | 0.126 |
| 47 | 47 | 0.0733 |
| 48 | 48 | 0.16 |
| 49 | 49 | 0.0579 |
| 5 | 5 | 0.999 |
| 50 | 50 | 0.962 |
| 51 | 51 | 0.837 |
| 52 | 52 | 0.219 |
| 53 | 53 | 0.357 |
| 54 | 54 | 0.705 |
| 55 | 55 | 0.812 |
| 56 | 56 | 0.991 |
| 57 | 57 | 0.0487 |
| 58 | 58 | 0.285 |
| 59 | 59 | 0.74 |
| 6 | 6 | 0.575 |
| 60 | 60 | 0.699 |
| 61 | 61 | 0.137 |
| 62 | 62 | 0.277 |
| 63 | 63 | 0.56 |
| 64 | 64 | 0.286 |
| 65 | 65 | 0.573 |
| 66 | 66 | 0.0852 |
| 67 | 67 | 0.835 |
| 68 | 68 | 0.18 |
| 69 | 69 | 0.943 |
| 7 | 7 | 0.18 |
| 70 | 70 | 0.911 |
| 71 | 71 | 0.0118 |
| 72 | 72 | 0.879 |
| 73 | 73 | 0.449 |
| 74 | 74 | 0.328 |
| 75 | 75 | 0.00865 |
| 76 | 76 | 0.103 |
| 77 | 77 | 0.503 |
| 78 | 78 | 0.408 |
| 79 | 79 | 0.396 |
| 8 | 8 | 0.225 |
| 80 | 80 | 0.932 |
| 81 | 81 | 0.0481 |
| 82 | 82 | 0.725 |
| 83 | 83 | 0.774 |
| 84 | 84 | 0.446 |
| 85 | 85 | 0.453 |
| 86 | 86 | 0.518 |
| 87 | 87 | 0.521 |
| 88 | 88 | 0.923 |
| 89 | 89 | 0.29 |
| 9 | 9 | 0.409 |
| 90 | 90 | 0.00191 |
| 91 | 91 | 0.725 |
| 92 | 92 | 0.902 |
| 93 | 93 | 0.877 |
| 94 | 94 | 0.235 |
| 95 | 95 | 0.259 |
| 96 | 96 | 0.624 |
| 97 | 97 | 0.069 |
| 98 | 98 | 0.516 |
| 99 | 99 | 0.318 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11268
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101154 RAJI cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
0060058 (lymphoma)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100104 (lymphoma cell line sample)
0100889 (Burkitt lymphoma cell line sample)
0101154 (RAJI cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
