FF:10618-108G6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005016 | |||
|accession_numbers=CAGE;DRX007851;DRR008723;DRZ000148;DRZ001533;DRZ011498;DRZ012883 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000255,CL:0000039,CL:0000586 | ||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:2994 | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:2994 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101575 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr20:55204351..55204377,+!p1@TFAP2C!2.36!289.13!TFAP2C;;chr10:8096631..8096660,+!p1@GATA3!2.33!252.24!GATA3;;chr2:16080659..16080685,+!p1@MYCN!2.33!214.42!MYCN;;chr17:45928521..45928539,-!p1@SP6!2.31!202.90!SP6;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.25!176.84!PEG3;;chrX:131547625..131547644,-!p4@MBNL3!2.22!165.78!MBNL3;;chr17:48072574..48072597,-!p1@DLX3!2.22!163.93!DLX3;;chr10:8096772..8096787,+!p2@GATA3!2.19!178.46!GATA3;;chr3:128212033..128212051,-!p1@GATA2!2.16!144.10!GATA2;;chr21:45681774..45681821,-!p1@DNMT3L!2.08!120.58!DNMT3L;;chr9:127358120..127358170,-!p3@NR6A1!2.02!102.60!NR6A1;;chr15:96869511..96869525,+!p16@NR2F2!1.97!101.45!NR2F2;;chr6:53013620..53013644,-!p1@GCM1!1.95!88.77!GCM1;;chr7:96654133..96654150,-!p1@DLX5!1.93!84.16!DLX5;;chr5:174151553..174151610,+!p1@MSX2!1.86!115.51!MSX2;;chr21:45681737..45681760,-!p2@DNMT3L!1.86!71.47!DNMT3L;;chr5:174151612..174151633,+!p2@MSX2!1.83!66.63!MSX2;;chr4:188916918..188916942,+!p1@ZFP42!1.82!64.33!ZFP42;;chr19:33793430..33793447,-!p1@CEBPA!1.78!237.48!CEBPA;;chr1:41827095..41827155,+!p1@FOXO6!1.77!77.70!FOXO6;;chr10:8095593..8095625,+!p3@GATA3!1.75!64.33!GATA3;;chr19:929027..929051,+!p4@ARID3A!1.74!53.72!ARID3A;;chr1:201979743..201979762,+!p1@ELF3!1.70!49.11!ELF3;;chr17:80797886..80797906,-!p1@ZNF750!1.66!44.73!ZNF750;;chr8:135708787..135708805,-!p2@ZFAT!1.65!43.81!ZFAT;;chr3:128206762..128206781,-!p2@GATA2!1.60!228.72!GATA2;;chr11:65554528..65554546,+!p1@OVOL1!1.60!38.50!OVOL1;;chr2:74229812..74229867,+!p1@TET3!1.58!90.38!TET3;;chr2:10091815..10091864,+!p1@GRHL1!1.58!48.88!GRHL1;;chr20:31350184..31350200,+!p1@DNMT3B!1.56!71.24!DNMT3B;;chr2:122042770..122042785,-!p1@TFCP2L1!1.54!33.43!TFCP2L1;;chr5:2751762..2751784,-!p1@IRX2!1.52!31.82!IRX2;;chr1:24645832..24645853,+!p1@GRHL3!1.45!26.98!GRHL3;;chr2:88752207..88752218,-!p1@FOXI3!1.44!26.75!FOXI3;;chr7:26191809..26191890,+!p1@NFE2L3!1.42!120.12!NFE2L3;;chrX:131547596..131547609,-!p10@MBNL3!1.42!25.13!MBNL3;;chr1:935398..935465,-!p2@HES4!1.41!50.26!HES4;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.41!24.90!SOHLH2;;chr12:19556998..19557013,+!p6@AEBP2!1.40!24.21!AEBP2;;chr6:10419884..10419898,-!p11@TFAP2A!1.39!23.52!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!1.36!227.34!KLF5;;chr11:12696102..12696113,+!p5@TEAD1!1.34!20.75!TEAD1;;chr17:48046543..48046575,+!p2@DLX4!1.32!19.83!DLX4;;chr11:65554563..65554576,+!p2@OVOL1!1.31!19.37!OVOL1;;chr2:16081912..16081931,+!p2@MYCN!1.29!18.45!MYCN;;chr1:216896752..216896778,-!p1@ESRRG!1.28!17.98!ESRRG;;chr20:50418972..50419029,-!p1@SALL4!1.28!17.98!SALL4;;chr20:50159198..50159299,-!p1@NFATC2!1.26!25.13!NFATC2;;chr1:42801540..42801562,-!p4@FOXJ3!1.26!17.06!FOXJ3;;chr19:926001..926046,+!p1@ARID3A!1.20!51.65!ARID3A;;chr6:10415484..10415508,-!p3@TFAP2A!1.20!14.76!TFAP2A;;chr6:10419768..10419819,-!p6@TFAP2A!1.20!14.76!TFAP2A;;chr6:10419824..10419840,-!p9@TFAP2A!1.20!14.76!TFAP2A;;chr10:70320041..70320065,+!p2@TET1!1.18!14.29!TET1;;chr5:2751785..2751808,-!p2@IRX2!1.18!14.06!IRX2;;chr10:114710098..114710130,+!p2@TCF7L2!1.17!103.52!TCF7L2;;chr11:2292226..2292270,-!p1@ASCL2!1.17!13.83!ASCL2;;chr12:3068634..3068656,+!p5@TEAD4!1.16!13.60!TEAD4;;chr1:216896780..216896800,-!p2@ESRRG!1.16!13.60!ESRRG;;chr2:16082155..16082169,+!p3@MYCN!1.16!13.37!MYCN;;chr11:12696071..12696086,+!p3@TEAD1!1.15!17.52!TEAD1;;chr10:70320074..70320106,+!p1@TET1!1.14!25.59!TET1;;chr1:201979703..201979721,+!p2@ELF3!1.14!12.68!ELF3;;chr18:19749386..19749404,+!p2@GATA6!1.13!17.98!GATA6;;chr17:48045917..48045977,+!p1@DLX4!1.13!12.45!DLX4;;chr12:3068544..3068597,+!p1@TEAD4!1.11!71.71!TEAD4;;chr19:50431973..50431998,+!p5@ATF5!1.10!14.76!ATF5;;chr19:926055..926068,+!p2@ARID3A!1.09!24.90!ARID3A;;chr1:247171347..247171366,-!p2@ZNF695!1.08!20.29!ZNF695;;chr7:96634878..96634900,+!p2@DLX6!1.08!11.07!DLX6;;chr3:141719209..141719215,-!p10@TFDP2!1.07!10.84!TFDP2;;chr10:114709999..114710031,+!p1@TCF7L2!1.06!247.16!TCF7L2;;chr2:46524897..46524911,+!p2@EPAS1!1.06!29.74!EPAS1;;chr3:189507432..189507459,+!p1@TP63!1.06!10.61!TP63;;chr5:174151648..174151659,+!p3@MSX2!1.06!10.61!MSX2;;chr12:19556960..19556982,+!p10@AEBP2!1.06!10.61!AEBP2;;chr17:45928443..45928473,-!p2@SP6!1.04!9.91!SP6;;chr6:53013605..53013616,-!p2@GCM1!1.04!9.91!GCM1;;chr18:19749541..19749557,+!p1@GATA6!1.03!30.66!GATA6;;chr7:27135591..27135658,-!p1@HOXA1!1.03!18.68!HOXA1;;chr19:57352109..57352153,-!p2@ZIM2!1.03!9.68!ZIM2;;chr20:55205825..55205847,+!p2@TFAP2C!1.03!9.68!TFAP2C;;chr1:209979467..209979494,-!p1@IRF6!1.02!10.61!IRF6;;chr10:8097321..8097348,+!p4@GATA3!1.02!9.45!GATA3;;chr3:141747441..141747452,-!p4@TFDP2!1.01!12.91!TFDP2;;chr12:6798731..6798751,-!p4@ZNF384!1.00!14.06!ZNF384;;chrX:56258844..56258882,+!p1@KLF8!1.00!12.45!KLF8;;chr21:45681768..45681773,-!p4@DNMT3L!1.00!8.99!DNMT3L;;chr19:45908292..45908374,-!p1@PPP1R13L!0.99!79.78!PPP1R13L;;chr3:128207349..128207386,-!p3@GATA2!0.99!8.76!GATA2;;chr9:137217986..137218049,+!p3@RXRA!0.98!24.90!RXRA;;chr10:114710244..114710257,+!p3@TCF7L2!0.98!23.75!TCF7L2;;chr15: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| |expression_enrichment_score=chr20:55204351..55204377,+!p1@TFAP2C!2.36!289.13!TFAP2C;;chr10:8096631..8096660,+!p1@GATA3!2.33!252.24!GATA3;;chr2:16080659..16080685,+!p1@MYCN!2.33!214.42!MYCN;;chr17:45928521..45928539,-!p1@SP6!2.31!202.90!SP6;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.25!176.84!PEG3;;chrX:131547625..131547644,-!p4@MBNL3!2.22!165.78!MBNL3;;chr17:48072574..48072597,-!p1@DLX3!2.22!163.93!DLX3;;chr10:8096772..8096787,+!p2@GATA3!2.19!178.46!GATA3;;chr3:128212033..128212051,-!p1@GATA2!2.16!144.10!GATA2;;chr21:45681774..45681821,-!p1@DNMT3L!2.08!120.58!DNMT3L;;chr9:127358120..127358170,-!p3@NR6A1!2.02!102.60!NR6A1;;chr15:96869511..96869525,+!p16@NR2F2!1.97!101.45!NR2F2;;chr6:53013620..53013644,-!p1@GCM1!1.95!88.77!GCM1;;chr7:96654133..96654150,-!p1@DLX5!1.93!84.16!DLX5;;chr5:174151553..174151610,+!p1@MSX2!1.86!115.51!MSX2;;chr21:45681737..45681760,-!p2@DNMT3L!1.86!71.47!DNMT3L;;chr5:174151612..174151633,+!p2@MSX2!1.83!66.63!MSX2;;chr4:188916918..188916942,+!p1@ZFP42!1.82!64.33!ZFP42;;chr19:33793430..33793447,-!p1@CEBPA!1.78!237.48!CEBPA;;chr1:41827095..41827155,+!p1@FOXO6!1.77!77.70!FOXO6;;chr10:8095593..8095625,+!p3@GATA3!1.75!64.33!GATA3;;chr19:929027..929051,+!p4@ARID3A!1.74!53.72!ARID3A;;chr1:201979743..201979762,+!p1@ELF3!1.70!49.11!ELF3;;chr17:80797886..80797906,-!p1@ZNF750!1.66!44.73!ZNF750;;chr8:135708787..135708805,-!p2@ZFAT!1.65!43.81!ZFAT;;chr3:128206762..128206781,-!p2@GATA2!1.60!228.72!GATA2;;chr11:65554528..65554546,+!p1@OVOL1!1.60!38.50!OVOL1;;chr2:74229812..74229867,+!p1@TET3!1.58!90.38!TET3;;chr2:10091815..10091864,+!p1@GRHL1!1.58!48.88!GRHL1;;chr20:31350184..31350200,+!p1@DNMT3B!1.56!71.24!DNMT3B;;chr2:122042770..122042785,-!p1@TFCP2L1!1.54!33.43!TFCP2L1;;chr5:2751762..2751784,-!p1@IRX2!1.52!31.82!IRX2;;chr1:24645832..24645853,+!p1@GRHL3!1.45!26.98!GRHL3;;chr2:88752207..88752218,-!p1@FOXI3!1.44!26.75!FOXI3;;chr7:26191809..26191890,+!p1@NFE2L3!1.42!120.12!NFE2L3;;chrX:131547596..131547609,-!p10@MBNL3!1.42!25.13!MBNL3;;chr1:935398..935465,-!p2@HES4!1.41!50.26!HES4;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.41!24.90!SOHLH2;;chr12:19556998..19557013,+!p6@AEBP2!1.40!24.21!AEBP2;;chr6:10419884..10419898,-!p11@TFAP2A!1.39!23.52!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!1.36!227.34!KLF5;;chr11:12696102..12696113,+!p5@TEAD1!1.34!20.75!TEAD1;;chr17:48046543..48046575,+!p2@DLX4!1.32!19.83!DLX4;;chr11:65554563..65554576,+!p2@OVOL1!1.31!19.37!OVOL1;;chr2:16081912..16081931,+!p2@MYCN!1.29!18.45!MYCN;;chr1:216896752..216896778,-!p1@ESRRG!1.28!17.98!ESRRG;;chr20:50418972..50419029,-!p1@SALL4!1.28!17.98!SALL4;;chr20:50159198..50159299,-!p1@NFATC2!1.26!25.13!NFATC2;;chr1:42801540..42801562,-!p4@FOXJ3!1.26!17.06!FOXJ3;;chr19:926001..926046,+!p1@ARID3A!1.20!51.65!ARID3A;;chr6:10415484..10415508,-!p3@TFAP2A!1.20!14.76!TFAP2A;;chr6:10419768..10419819,-!p6@TFAP2A!1.20!14.76!TFAP2A;;chr6:10419824..10419840,-!p9@TFAP2A!1.20!14.76!TFAP2A;;chr10:70320041..70320065,+!p2@TET1!1.18!14.29!TET1;;chr5:2751785..2751808,-!p2@IRX2!1.18!14.06!IRX2;;chr10:114710098..114710130,+!p2@TCF7L2!1.17!103.52!TCF7L2;;chr11:2292226..2292270,-!p1@ASCL2!1.17!13.83!ASCL2;;chr12:3068634..3068656,+!p5@TEAD4!1.16!13.60!TEAD4;;chr1:216896780..216896800,-!p2@ESRRG!1.16!13.60!ESRRG;;chr2:16082155..16082169,+!p3@MYCN!1.16!13.37!MYCN;;chr11:12696071..12696086,+!p3@TEAD1!1.15!17.52!TEAD1;;chr10:70320074..70320106,+!p1@TET1!1.14!25.59!TET1;;chr1:201979703..201979721,+!p2@ELF3!1.14!12.68!ELF3;;chr18:19749386..19749404,+!p2@GATA6!1.13!17.98!GATA6;;chr17:48045917..48045977,+!p1@DLX4!1.13!12.45!DLX4;;chr12:3068544..3068597,+!p1@TEAD4!1.11!71.71!TEAD4;;chr19:50431973..50431998,+!p5@ATF5!1.10!14.76!ATF5;;chr19:926055..926068,+!p2@ARID3A!1.09!24.90!ARID3A;;chr1:247171347..247171366,-!p2@ZNF695!1.08!20.29!ZNF695;;chr7:96634878..96634900,+!p2@DLX6!1.08!11.07!DLX6;;chr3:141719209..141719215,-!p10@TFDP2!1.07!10.84!TFDP2;;chr10:114709999..114710031,+!p1@TCF7L2!1.06!247.16!TCF7L2;;chr2:46524897..46524911,+!p2@EPAS1!1.06!29.74!EPAS1;;chr3:189507432..189507459,+!p1@TP63!1.06!10.61!TP63;;chr5:174151648..174151659,+!p3@MSX2!1.06!10.61!MSX2;;chr12:19556960..19556982,+!p10@AEBP2!1.06!10.61!AEBP2;;chr17:45928443..45928473,-!p2@SP6!1.04!9.91!SP6;;chr6:53013605..53013616,-!p2@GCM1!1.04!9.91!GCM1;;chr18:19749541..19749557,+!p1@GATA6!1.03!30.66!GATA6;;chr7:27135591..27135658,-!p1@HOXA1!1.03!18.68!HOXA1;;chr19:57352109..57352153,-!p2@ZIM2!1.03!9.68!ZIM2;;chr20:55205825..55205847,+!p2@TFAP2C!1.03!9.68!TFAP2C;;chr1:209979467..209979494,-!p1@IRF6!1.02!10.61!IRF6;;chr10:8097321..8097348,+!p4@GATA3!1.02!9.45!GATA3;;chr3:141747441..141747452,-!p4@TFDP2!1.01!12.91!TFDP2;;chr12:6798731..6798751,-!p4@ZNF384!1.00!14.06!ZNF384;;chrX:56258844..56258882,+!p1@KLF8!1.00!12.45!KLF8;;chr21:45681768..45681773,-!p4@DNMT3L!1.00!8.99!DNMT3L;;chr19:45908292..45908374,-!p1@PPP1R13L!0.99!79.78!PPP1R13L;;chr3:128207349..128207386,-!p3@GATA2!0.99!8.76!GATA2;;chr9:137217986..137218049,+!p3@RXRA!0.98!24.90!RXRA;;chr10:114710244..114710257,+!p3@TCF7L2!0.98!23.75!TCF7L2;;chr15:96873861..96873872,+!p9@NR2F2!0.98!17.98!NR2F2;;chr1:6479968..6479986,-!p1@HES2!0.98!8.53!HES2;;chr7:35293685..35293718,-!p1@TBX20!0.98!8.53!TBX20;;chr5:1887070..1887114,-!p1@IRX4!0.97!8.30!IRX4;;chr2:10091922..10091935,+!p3@GRHL1!0.97!8.30!GRHL1;;chr1:204042233..204042249,+!p1@SOX13!0.96!53.03!SOX13;;chr15:96874244..96874259,+!p5@NR2F2!0.96!20.29!NR2F2;;chr3:147111198..147111225,+!p4@ZIC1!0.96!8.07!ZIC1;;chr1:24645921..24645973,+!p2@GRHL3!0.95!7.84!GRHL3;;chr8:102504651..102504683,+!p1@GRHL2!0.95!7.84!GRHL2;;chr13:79177703..79177729,-!p2@POU4F1!0.95!7.84!POU4F1;;chr19:53289995..53290050,-!p1@ZNF600!0.94!33.20!ZNF600;;chr19:20188776..20188826,+!p1@ZNF90!0.93!20.75!ZNF90;;chr10:114710218..114710229,+!p4@TCF7L2!0.93!15.45!TCF7L2;;chr14:75894714..75894733,+!p1@JDP2!0.92!212.81!JDP2;;chr19:48773337..48773339,+!p2@ZNF114!0.92!7.38!ZNF114;;chr19:929006..929018,+!p14@ARID3A!0.92!7.38!ARID3A;;chr3:12330560..12330579,+!p1@PPARG!0.91!8.30!PPARG;;chr12:3068668..3068689,+!p7@TEAD4!0.90!6.92!TEAD4;;chr18:19749353..19749367,+!p4@GATA6!0.90!6.92!GATA6;;chr7:96635178..96635181,+!p1@DLX6!0.90!6.92!DLX6;;chr3:32023232..32023273,+!p1@ZNF860!0.89!9.91!ZNF860;;chr18:19750951..19750980,+!p10@GATA6!0.89!6.69!GATA6;;chr10:8097295..8097320,+!p6@GATA3!0.89!6.69!GATA3;;chr3:126076264..126076305,-!p2@KLF15!0.87!9.22!KLF15;;chr7:96654026..96654061,-!p2@DLX5!0.87!6.46!DLX5;;chr12:54694653..54694672,-!p2@NFE2!0.87!6.46!NFE2;;chr3:12329397..12329433,+!p2@PPARG!0.86!14.99!PPARG;;chr2:16080635..16080650,+!p4@MYCN!0.86!6.23!MYCN;;chr20:50419055..50419066,-!p3@SALL4!0.86!6.23!SALL4;;chr11:63684602..63684664,-!p1@RCOR2!0.85!12.45!RCOR2;;chr9:127533582..127533615,-!p1@NR6A1!0.84!8.99!NR6A1;;chr19:33865009..33865090,+!p3@CEBPG!0.84!8.07!CEBPG;;chr6:41703952..41703994,-!p4@TFEB!0.84!5.99!TFEB;;chr17:48049323..48049330,+!p6@DLX4!0.83!5.76!DLX4;;chr3:12329358..12329393,+!p3@PPARG!0.82!14.76!PPARG;;chr3:126076242..126076257,-!p1@KLF15!0.82!7.15!KLF15;;chr20:50792507..50792525,-!p12@ZFP64!0.82!5.53!ZFP64;;chr7:96634850..96634874,+!p3@DLX6!0.82!5.53!DLX6;;chrX:131540410..131540438,-!p13@MBNL3!0.82!5.53!MBNL3;;chr19:53030906..53030952,+!p1@ZNF808!0.80!21.21!ZNF808;;chr19:53496806..53496848,-!p2@ZNF702P!0.80!8.30!ZNF702P;;chr10:114710083..114710092,+!p8@TCF7L2!0.80!7.38!TCF7L2;;chr10:8100691..8100732,+!p5@GATA3!0.80!5.30!GATA3;;chr2:88752231..88752245,-!p2@FOXI3!0.80!5.30!FOXI3;;chr17:41277372..41277418,-!p1@BRCA1!0.79!20.29!BRCA1;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.78!53.03!ZNF595;;chr2:25475120..25475176,-!p2@DNMT3A!0.78!6.92!DNMT3A;;chr7:156803329..156803362,-!p1@MNX1!0.78!5.07!MNX1;;chr9:137218281..137218340,+!p1@RXRA!0.77!153.56!RXRA;;chr19:58326246..58326262,-!p2@ZNF552!0.77!12.45!ZNF552;;chr10:114710060..114710069,+!p5@TCF7L2!0.77!8.76!TCF7L2;;chr12:6798692..6798723,-!p5@ZNF384!0.77!8.30!ZNF384;;chr19:53324884..53324886,-!p1@ZNF28!0.77!7.15!ZNF28;;chr17:41614135..41614151,-!p20@ETV4!0.77!4.84!ETV4;;chr19:45909594..45909625,-!p2@PPP1R13L!0.76!23.98!PPP1R13L;;chr6:34204672..34204692,+!p1@HMGA1!0.75!574.57!HMGA1;;chr12:2986275..2986363,-!p1@FOXM1!0.75!51.42!FOXM1;;chr2:42795651..42795676,+!p3@MTA3!0.75!13.14!MTA3;;chr19:925727..925784,+!p3@ARID3A!0.75!10.61!ARID3A;;chr8:81398682..81398697,+!p6@ZBTB10!0.75!6.23!ZBTB10;;chr19:58341656..58341694,+!p5@ZNF587!0.75!5.76!ZNF587;;chr20:18038521..18038571,-!p1@OVOL2!0.75!4.61!OVOL2;;chr17:7493405..7493419,-!p1@SOX15!0.75!4.61!SOX15;;chr10:51565239..51565263,+!p2@NCOA4!0.74!116.90!NCOA4;;chr3:141747459..141747475,-!p1@TFDP2!0.74!41.96!TFDP2;;chr6:126102254..126102289,+!p5@NCOA7!0.74!13.60!NCOA7;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.73!10.14!SOHLH2;;chr1:204042275..204042286,+!p4@SOX13!0.73!7.15!SOX13;;chr1:247171316..247171336,-!p3@ZNF695!0.73!6.92!ZNF695;;chr7:28725715..28725727,+!p3@CREB5!0.73!5.30!CREB5;;chr5:134369643..134369675,-!p4@PITX1!0.73!4.38!PITX1;;chr5:174151686..174151697,+!p4@MSX2!0.73!4.38!MSX2;;chr7:96634908..96634923,+!p4@DLX6!0.73!4.38!DLX6;;chr7:96635448..96635470,+!p5@DLX6!0.73!4.38!DLX6;;chr12:19556947..19556956,+!p14@AEBP2!0.73!4.38!AEBP2;;chr4:106068026..106068084,+!p1@TET2!0.72!43.12!TET2;;chr15:85291544..85291598,+!p2@ZNF592!0.72!29.28!ZNF592;;chr14:73360799..73360817,-!p1@DPF3!0.72!16.37!DPF3;;chr12:51566562..51566584,-!p2@TFCP2!0.72!12.91!TFCP2;;chr20:42295745..42295765,+!p1@MYBL2!0.71!75.62!MYBL2;;chr3:141868357..141868393,-!p3@TFDP2!0.71!30.20!TFDP2;;chr19:53360870..53360873,-!p1@ZNF468!0.71!16.83!ZNF468;;chr10:51572339..51572376,+!p4@NCOA4!0.71!10.14!NCOA4;;chr19:53496768..53496799,-!p1@ZNF702P!0.71!6.69!ZNF702P;;chr18:55102598..55102623,+!p1@ONECUT2!0.71!4.15!ONECUT2;;chr9:129376201..129376225,+!p1@LMX1B!0.71!4.15!LMX1B;;chr10:8097228..8097239,+!p13@GATA3!0.71!4.15!GATA3;;chr2:10091783..10091811,+!p2@GRHL1!0.71!4.15!GRHL1;;chr2:63277948..63277974,+!p1@OTX1!0.71!4.15!OTX1;;chr6:10415276..10415341,-!p2@TFAP2A!0.70!5.07!TFAP2A;;chr10:51572408..51572454,+!p3@NCOA4!0.69!25.82!NCOA4;;chr19:48774586..48774670,+!p1@ZNF114!0.69!5.07!ZNF114;;chrX:129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| ||
Line 36: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aT3M-3.CNhs11820.10618-108G6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aT3M-3.CNhs11820.10618-108G6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aT3M-3.CNhs11820.10618-108G6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aT3M-3.CNhs11820.10618-108G6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aT3M-3.CNhs11820.10618-108G6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10618-108G6 | |id=FF:10618-108G6 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0101575 | |is_a=EFO:0002091;;FF:0000210;;FF:0101575 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11820 | |||
|library_id_phase_based=2:CNhs11820 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10618 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10618 | |||
|name=choriocarcinoma cell line:T3M-3 | |name=choriocarcinoma cell line:T3M-3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 44: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11820,LSID829,release010,COMPLETED | |profile_hcage=CNhs11820,LSID829,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.228321221900151,0.090104171961993,0.588975893007005,0,0,-0.160318030086386,0,0.0089778405431532,0.0531375963836935,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.00785372430606447,0,0,-0.0428524178168692,0,0,0,0,0,0,0,0,0,0,0,0,-0.0937043882408453,0,0,0,0,0,0,0,0,0.134997675818238,0,0,0,0,0,-0.0122741606684083,0,-0.0969923612426051,0,0,0.0673445792882629,0,0,0,0,0,0,0,0,0.090104171961993,0,0,0,0,0,0,0,0,0,0.0450520859809965,0,0,0.0450520859809965,0,0,0.090104171961993,0,0,0,0.0368054430155619,-0.128853299445189,0,0,0,0,0.130285870662445,0.00342836857372663,0,0,0,0,0,0,0,0,0,0,0.224249672625302,0,0,0,0,0,0,0.278157302235315,0,0,0,-0.0401021268971027,-0.249212834215073,0,0,0,0,0,0 | |||
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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 59: | Line 77: | ||
|rna_weight_ug=181.29 | |rna_weight_ug=181.29 | ||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1018 | |sample_cell_catalog=RCB1018 | ||
|sample_cell_line=T3M-3 | |sample_cell_line=T3M-3 | ||
Line 80: | Line 99: | ||
|top_motifs=VSX1,2:2.23307754789;SNAI1..3:1.56633807648;HOXA9_MEIS1:1.4061433732;RORA:1.39103643952;PITX1..3:1.27644048852;PAX1,9:1.22000757533;ESRRA:1.21921406967;ZEB1:1.19721557635;MYOD1:1.17391624087;HOX{A6,A7,B6,B7}:1.1626361047;bHLH_family:1.12117607961;FOXP1:1.05480939124;FOXD3:1.04986826276;ELK1,4_GABP{A,B1}:1.01691276425;HOX{A5,B5}:0.991283269922;TEAD1:0.945380708158;FOXQ1:0.846904527752;XCPE1{core}:0.815137264543;SP1:0.734982431243;LMO2:0.714978039976;NFY{A,B,C}:0.710707273501;CDC5L:0.659842806402;GATA6:0.619743470237;OCT4_SOX2{dimer}:0.611147501923;FOXN1:0.608183884622;TOPORS:0.593853851666;ZNF384:0.531194489597;RBPJ:0.512898947138;HLF:0.512648732815;ZNF143:0.495998119232;HIF1A:0.473482997057;E2F1..5:0.469193622588;NKX3-2:0.459150558942;NRF1:0.436142399324;POU1F1:0.433942465902;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.428494449728;PRRX1,2:0.421305851503;CUX2:0.406110578065;POU2F1..3:0.381747034497;FOX{F1,F2,J1}:0.370528032615;FOXA2:0.357673066999;BREu{core}:0.353517418122;ALX1:0.344272571074;AIRE:0.337100672604;LHX3,4:0.336167847868;GFI1:0.324296593296;SREBF1,2:0.317666045391;TEF:0.257471704476;CEBPA,B_DDIT3:0.252786315649;SOX17:0.217514096765;LEF1_TCF7_TCF7L1,2:0.189510261167;MYB:0.188694293108;PAX4:0.159036470206;STAT5{A,B}:0.137557331954;ADNP_IRX_SIX_ZHX:0.129129822223;HNF1A:0.112471154337;PBX1:0.107215398337;NFIX:0.0727034884098;ZFP161:0.0719397354401;HNF4A_NR2F1,2:0.0402222465827;TFDP1:0.0354004915336;MED-1{core}:0.024679020233;CRX:0.0137058893087;FOX{I1,J2}:0.00186775140456;EVI1:-0.0100560285006;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0115182627335;YY1:-0.0128849095417;TP53:-0.0147089097407;KLF4:-0.0190960789644;FOXL1:-0.0353646021572;PAX2:-0.036092693403;IKZF1:-0.0462838961689;MYBL2:-0.0474575083855;HOX{A4,D4}:-0.0521869549708;POU6F1:-0.0644032318247;PDX1:-0.0795948795333;ONECUT1,2:-0.079944171799;SOX5:-0.081727704697;NFE2L2:-0.125293664673;NANOG:-0.168832086023;PATZ1:-0.168988653588;ESR1:-0.171760025514;ELF1,2,4:-0.18468212615;PAX3,7:-0.188230214857;IKZF2:-0.193303703673;SOX{8,9,10}:-0.214453562008;TBX4,5:-0.220889493759;ZBTB16:-0.226609990225;ZNF423:-0.250272596867;TFAP2B:-0.259089766422;RFX2..5_RFXANK_RFXAP:-0.298189502713;ZIC1..3:-0.304355670421;ARID5B:-0.310537052761;CREB1:-0.31268283381;EN1,2:-0.314347707748;ALX4:-0.324323596005;GATA4:-0.343343644407;NR5A1,2:-0.343662141152;TFAP2{A,C}:-0.347266751297;FOS_FOS{B,L1}_JUN{B,D}:-0.35182623293;SOX2:-0.360130757254;CDX1,2,4:-0.370478927422;MTF1:-0.376331995192;STAT2,4,6:-0.385469185579;NFE2:-0.401191339534;ZNF238:-0.413252293677;XBP1:-0.418210400069;BACH2:-0.424920385528;EGR1..3:-0.427795874909;NKX2-3_NKX2-5:-0.435042781205;EBF1:-0.457085004207;ATF4:-0.472091271433;MEF2{A,B,C,D}:-0.479766882534;ATF2:-0.483337831345;NFKB1_REL_RELA:-0.501712454803;SPIB:-0.513832901274;AHR_ARNT_ARNT2:-0.536469161984;DMAP1_NCOR{1,2}_SMARC:-0.537356642518;RUNX1..3:-0.545664619454;FOSL2:-0.550032985257;RFX1:-0.566668814518;FOXO1,3,4:-0.56880281698;STAT1,3:-0.583632413149;GCM1,2:-0.588992650124;SPI1:-0.590924116669;ZNF148:-0.592484420862;ETS1,2:-0.600526156286;TAL1_TCF{3,4,12}:-0.60128056609;ATF5_CREB3:-0.603925179831;DBP:-0.613781996138;HMGA1,2:-0.617369402191;FOXP3:-0.618812603457;NKX2-1,4:-0.622953322014;NKX2-2,8:-0.628497377422;NR1H4:-0.650602654264;UFEwm:-0.65239663206;FOXM1:-0.670976397548;NFIL3:-0.672565942749;ZBTB6:-0.674433131678;TGIF1:-0.704790017588;HES1:-0.706934659302;GTF2I:-0.707571498749;SPZ1:-0.713571880208;PAX8:-0.714120856378;HIC1:-0.726879040025;GFI1B:-0.741352362366;BPTF:-0.756040500715;PAX6:-0.768505417932;FOX{D1,D2}:-0.76853058416;MAFB:-0.768598683742;NFE2L1:-0.774980633645;MYFfamily:-0.793519530897;GTF2A1,2:-0.793798478688;MAZ:-0.796013348502;POU5F1:-0.797468508066;PAX5:-0.835949033254;JUN:-0.847904985538;NKX6-1,2:-0.850814596657;TLX1..3_NFIC{dimer}:-0.857765794073;TFAP4:-0.864366464577;HAND1,2:-0.886363092492;NR3C1:-0.892767888309;GZF1:-0.91220078359;REST:-0.951416050006;POU3F1..4:-0.966639068891;HMX1:-0.970020838544;NHLH1,2:-0.971601842836;AR:-1.02546253325;RREB1:-1.03736462965;ATF6:-1.05855520736;T:-1.0633470261;TBP:-1.10131626602;MTE{core}:-1.12426169466;IRF7:-1.12833091923;PRDM1:-1.15357501854;HBP1_HMGB_SSRP1_UBTF:-1.17546522142;NKX3-1:-1.19084514848;SRF:-1.19319707634;NFATC1..3:-1.24200685134;TLX2:-1.24576720578;MZF1:-1.24576825868;TFCP2:-1.31471380291;HSF1,2:-1.33967612609;RXRA_VDR{dimer}:-1.34213215097;PPARG:-1.3546437829;NR6A1:-1.41206837723;NANOG{mouse}:-1.43452395806;GLI1..3:-1.52602417886;IRF1,2:-1.55080468711;EP300:-1.57292862467;RXR{A,B,G}:-1.61041433671;SMAD1..7,9:-2.01300367262 | |top_motifs=VSX1,2:2.23307754789;SNAI1..3:1.56633807648;HOXA9_MEIS1:1.4061433732;RORA:1.39103643952;PITX1..3:1.27644048852;PAX1,9:1.22000757533;ESRRA:1.21921406967;ZEB1:1.19721557635;MYOD1:1.17391624087;HOX{A6,A7,B6,B7}:1.1626361047;bHLH_family:1.12117607961;FOXP1:1.05480939124;FOXD3:1.04986826276;ELK1,4_GABP{A,B1}:1.01691276425;HOX{A5,B5}:0.991283269922;TEAD1:0.945380708158;FOXQ1:0.846904527752;XCPE1{core}:0.815137264543;SP1:0.734982431243;LMO2:0.714978039976;NFY{A,B,C}:0.710707273501;CDC5L:0.659842806402;GATA6:0.619743470237;OCT4_SOX2{dimer}:0.611147501923;FOXN1:0.608183884622;TOPORS:0.593853851666;ZNF384:0.531194489597;RBPJ:0.512898947138;HLF:0.512648732815;ZNF143:0.495998119232;HIF1A:0.473482997057;E2F1..5:0.469193622588;NKX3-2:0.459150558942;NRF1:0.436142399324;POU1F1:0.433942465902;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.428494449728;PRRX1,2:0.421305851503;CUX2:0.406110578065;POU2F1..3:0.381747034497;FOX{F1,F2,J1}:0.370528032615;FOXA2:0.357673066999;BREu{core}:0.353517418122;ALX1:0.344272571074;AIRE:0.337100672604;LHX3,4:0.336167847868;GFI1:0.324296593296;SREBF1,2:0.317666045391;TEF:0.257471704476;CEBPA,B_DDIT3:0.252786315649;SOX17:0.217514096765;LEF1_TCF7_TCF7L1,2:0.189510261167;MYB:0.188694293108;PAX4:0.159036470206;STAT5{A,B}:0.137557331954;ADNP_IRX_SIX_ZHX:0.129129822223;HNF1A:0.112471154337;PBX1:0.107215398337;NFIX:0.0727034884098;ZFP161:0.0719397354401;HNF4A_NR2F1,2:0.0402222465827;TFDP1:0.0354004915336;MED-1{core}:0.024679020233;CRX:0.0137058893087;FOX{I1,J2}:0.00186775140456;EVI1:-0.0100560285006;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0115182627335;YY1:-0.0128849095417;TP53:-0.0147089097407;KLF4:-0.0190960789644;FOXL1:-0.0353646021572;PAX2:-0.036092693403;IKZF1:-0.0462838961689;MYBL2:-0.0474575083855;HOX{A4,D4}:-0.0521869549708;POU6F1:-0.0644032318247;PDX1:-0.0795948795333;ONECUT1,2:-0.079944171799;SOX5:-0.081727704697;NFE2L2:-0.125293664673;NANOG:-0.168832086023;PATZ1:-0.168988653588;ESR1:-0.171760025514;ELF1,2,4:-0.18468212615;PAX3,7:-0.188230214857;IKZF2:-0.193303703673;SOX{8,9,10}:-0.214453562008;TBX4,5:-0.220889493759;ZBTB16:-0.226609990225;ZNF423:-0.250272596867;TFAP2B:-0.259089766422;RFX2..5_RFXANK_RFXAP:-0.298189502713;ZIC1..3:-0.304355670421;ARID5B:-0.310537052761;CREB1:-0.31268283381;EN1,2:-0.314347707748;ALX4:-0.324323596005;GATA4:-0.343343644407;NR5A1,2:-0.343662141152;TFAP2{A,C}:-0.347266751297;FOS_FOS{B,L1}_JUN{B,D}:-0.35182623293;SOX2:-0.360130757254;CDX1,2,4:-0.370478927422;MTF1:-0.376331995192;STAT2,4,6:-0.385469185579;NFE2:-0.401191339534;ZNF238:-0.413252293677;XBP1:-0.418210400069;BACH2:-0.424920385528;EGR1..3:-0.427795874909;NKX2-3_NKX2-5:-0.435042781205;EBF1:-0.457085004207;ATF4:-0.472091271433;MEF2{A,B,C,D}:-0.479766882534;ATF2:-0.483337831345;NFKB1_REL_RELA:-0.501712454803;SPIB:-0.513832901274;AHR_ARNT_ARNT2:-0.536469161984;DMAP1_NCOR{1,2}_SMARC:-0.537356642518;RUNX1..3:-0.545664619454;FOSL2:-0.550032985257;RFX1:-0.566668814518;FOXO1,3,4:-0.56880281698;STAT1,3:-0.583632413149;GCM1,2:-0.588992650124;SPI1:-0.590924116669;ZNF148:-0.592484420862;ETS1,2:-0.600526156286;TAL1_TCF{3,4,12}:-0.60128056609;ATF5_CREB3:-0.603925179831;DBP:-0.613781996138;HMGA1,2:-0.617369402191;FOXP3:-0.618812603457;NKX2-1,4:-0.622953322014;NKX2-2,8:-0.628497377422;NR1H4:-0.650602654264;UFEwm:-0.65239663206;FOXM1:-0.670976397548;NFIL3:-0.672565942749;ZBTB6:-0.674433131678;TGIF1:-0.704790017588;HES1:-0.706934659302;GTF2I:-0.707571498749;SPZ1:-0.713571880208;PAX8:-0.714120856378;HIC1:-0.726879040025;GFI1B:-0.741352362366;BPTF:-0.756040500715;PAX6:-0.768505417932;FOX{D1,D2}:-0.76853058416;MAFB:-0.768598683742;NFE2L1:-0.774980633645;MYFfamily:-0.793519530897;GTF2A1,2:-0.793798478688;MAZ:-0.796013348502;POU5F1:-0.797468508066;PAX5:-0.835949033254;JUN:-0.847904985538;NKX6-1,2:-0.850814596657;TLX1..3_NFIC{dimer}:-0.857765794073;TFAP4:-0.864366464577;HAND1,2:-0.886363092492;NR3C1:-0.892767888309;GZF1:-0.91220078359;REST:-0.951416050006;POU3F1..4:-0.966639068891;HMX1:-0.970020838544;NHLH1,2:-0.971601842836;AR:-1.02546253325;RREB1:-1.03736462965;ATF6:-1.05855520736;T:-1.0633470261;TBP:-1.10131626602;MTE{core}:-1.12426169466;IRF7:-1.12833091923;PRDM1:-1.15357501854;HBP1_HMGB_SSRP1_UBTF:-1.17546522142;NKX3-1:-1.19084514848;SRF:-1.19319707634;NFATC1..3:-1.24200685134;TLX2:-1.24576720578;MZF1:-1.24576825868;TFCP2:-1.31471380291;HSF1,2:-1.33967612609;RXRA_VDR{dimer}:-1.34213215097;PPARG:-1.3546437829;NR6A1:-1.41206837723;NANOG{mouse}:-1.43452395806;GLI1..3:-1.52602417886;IRF1,2:-1.55080468711;EP300:-1.57292862467;RXR{A,B,G}:-1.61041433671;SMAD1..7,9:-2.01300367262 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10618-108G6;search_select_hide=table117:FF:10618-108G6 | |||
}} | }} |
Latest revision as of 14:31, 3 June 2020
Name: | choriocarcinoma cell line:T3M-3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11820 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11820
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11820
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.803 |
10 | 10 | 0.937 |
100 | 100 | 0.0656 |
101 | 101 | 0.706 |
102 | 102 | 0.518 |
103 | 103 | 0.101 |
104 | 104 | 0.17 |
105 | 105 | 0.55 |
106 | 106 | 0.0194 |
107 | 107 | 0.672 |
108 | 108 | 0.716 |
109 | 109 | 0.0812 |
11 | 11 | 0.824 |
110 | 110 | 0.271 |
111 | 111 | 0.672 |
112 | 112 | 0.247 |
113 | 113 | 0.14 |
114 | 114 | 0.314 |
115 | 115 | 0.886 |
116 | 116 | 0.569 |
117 | 117 | 0.271 |
118 | 118 | 0.366 |
119 | 119 | 0.875 |
12 | 12 | 0.773 |
120 | 120 | 0.735 |
121 | 121 | 0.955 |
122 | 122 | 0.811 |
123 | 123 | 0.0186 |
124 | 124 | 0.956 |
125 | 125 | 0.649 |
126 | 126 | 0.991 |
127 | 127 | 0.621 |
128 | 128 | 0.168 |
129 | 129 | 0.643 |
13 | 13 | 0.00889 |
130 | 130 | 0.923 |
131 | 131 | 0.238 |
132 | 132 | 0.907 |
133 | 133 | 6.42448e-4 |
134 | 134 | 0.767 |
135 | 135 | 0.0195 |
136 | 136 | 0.0347 |
137 | 137 | 0.0302 |
138 | 138 | 0.92 |
139 | 139 | 0.565 |
14 | 14 | 0.861 |
140 | 140 | 0.569 |
141 | 141 | 0.123 |
142 | 142 | 0.25 |
143 | 143 | 0.0291 |
144 | 144 | 0.0419 |
145 | 145 | 0.891 |
146 | 146 | 0.937 |
147 | 147 | 0.312 |
148 | 148 | 0.109 |
149 | 149 | 0.528 |
15 | 15 | 0.743 |
150 | 150 | 0.258 |
151 | 151 | 0.198 |
152 | 152 | 0.899 |
153 | 153 | 0.439 |
154 | 154 | 0.856 |
155 | 155 | 0.307 |
156 | 156 | 0.625 |
157 | 157 | 0.802 |
158 | 158 | 0.597 |
159 | 159 | 0.914 |
16 | 16 | 0.65 |
160 | 160 | 0.752 |
161 | 161 | 0.529 |
162 | 162 | 0.394 |
163 | 163 | 0.359 |
164 | 164 | 0.796 |
165 | 165 | 0.181 |
166 | 166 | 0.0142 |
167 | 167 | 0.611 |
168 | 168 | 0.0341 |
169 | 169 | 0.913 |
17 | 17 | 0.445 |
18 | 18 | 0.77 |
19 | 19 | 0.384 |
2 | 2 | 0.34 |
20 | 20 | 0.356 |
21 | 21 | 0.6 |
22 | 22 | 0.692 |
23 | 23 | 0.127 |
24 | 24 | 0.85 |
25 | 25 | 0.478 |
26 | 26 | 0.976 |
27 | 27 | 0.473 |
28 | 28 | 0.918 |
29 | 29 | 0.606 |
3 | 3 | 0.987 |
30 | 30 | 0.722 |
31 | 31 | 0.417 |
32 | 32 | 0.142 |
33 | 33 | 0.936 |
34 | 34 | 0.59 |
35 | 35 | 0.214 |
36 | 36 | 0.0646 |
37 | 37 | 0.707 |
38 | 38 | 0.528 |
39 | 39 | 0.124 |
4 | 4 | 0.375 |
40 | 40 | 0.0359 |
41 | 41 | 0.0475 |
42 | 42 | 0.481 |
43 | 43 | 0.384 |
44 | 44 | 0.915 |
45 | 45 | 0.937 |
46 | 46 | 0.501 |
47 | 47 | 0.482 |
48 | 48 | 0.525 |
49 | 49 | 0.637 |
5 | 5 | 0.468 |
50 | 50 | 0.514 |
51 | 51 | 0.919 |
52 | 52 | 0.708 |
53 | 53 | 0.627 |
54 | 54 | 0.948 |
55 | 55 | 0.943 |
56 | 56 | 0.664 |
57 | 57 | 0.0418 |
58 | 58 | 0.994 |
59 | 59 | 0.0799 |
6 | 6 | 0.102 |
60 | 60 | 0.363 |
61 | 61 | 0.404 |
62 | 62 | 0.598 |
63 | 63 | 0.655 |
64 | 64 | 0.457 |
65 | 65 | 0.763 |
66 | 66 | 0.0519 |
67 | 67 | 0.611 |
68 | 68 | 0.1 |
69 | 69 | 0.604 |
7 | 7 | 0.205 |
70 | 70 | 0.142 |
71 | 71 | 0.147 |
72 | 72 | 0.119 |
73 | 73 | 0.974 |
74 | 74 | 0.225 |
75 | 75 | 0.976 |
76 | 76 | 0.468 |
77 | 77 | 0.781 |
78 | 78 | 0.274 |
79 | 79 | 0.151 |
8 | 8 | 0.526 |
80 | 80 | 0.0908 |
81 | 81 | 0.456 |
82 | 82 | 0.57 |
83 | 83 | 0.216 |
84 | 84 | 0.953 |
85 | 85 | 0.0814 |
86 | 86 | 0.246 |
87 | 87 | 0.561 |
88 | 88 | 0.641 |
89 | 89 | 0.0542 |
9 | 9 | 0.148 |
90 | 90 | 0.709 |
91 | 91 | 0.0684 |
92 | 92 | 0.285 |
93 | 93 | 0.815 |
94 | 94 | 0.825 |
95 | 95 | 0.068 |
96 | 96 | 0.366 |
97 | 97 | 0.444 |
98 | 98 | 0.66 |
99 | 99 | 0.662 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11820
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101575 choriocarcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000255 (eukaryotic cell)
0000039 (germ line cell)
0000586 (germ cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101575 (choriocarcinoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA