FF:10732-110B3: Difference between revisions

Latest revision as of 15:02, 3 June 2020

Name:	pagetoid sarcoma cell line:Hs 925.T
Species:	Human (Homo sapiens)
Library ID:	CNhs11856
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	NA
sex	male
age	58
cell type	unclassifiable
cell line	Hs 925.T
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005548

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11856		CAGE		DRX007979		DRR008851

Accession ID Hg19

Library id		BAM		CTSS
CNhs11856		DRZ000276		DRZ001661

Accession ID Hg38

Library id		BAM		CTSS
CNhs11856		DRZ011626		DRZ013011

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.398
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.318
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0927
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.262
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.417
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.213
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.303
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.0798
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0477
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0348
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0377
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.306
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.147
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0798
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.744
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.497
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.48
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.872
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11856

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.711
MA0003.1	MA0003.1	0.0633
MA0004.1	MA0004.1	0.464
MA0006.1	MA0006.1	0.379
MA0007.1	MA0007.1	0.657
MA0009.1	MA0009.1	0.247
MA0014.1	MA0014.1	0.712
MA0017.1	MA0017.1	0.00785
MA0018.2	MA0018.2	0.337
MA0019.1	MA0019.1	0.873
MA0024.1	MA0024.1	0.373
MA0025.1	MA0025.1	0.622
MA0027.1	MA0027.1	0.887
MA0028.1	MA0028.1	6.60868e-5
MA0029.1	MA0029.1	0.141
MA0030.1	MA0030.1	0.00653
MA0031.1	MA0031.1	0.109
MA0035.2	MA0035.2	0.134
MA0038.1	MA0038.1	0.00121
MA0039.2	MA0039.2	0.79
MA0040.1	MA0040.1	0.0925
MA0041.1	MA0041.1	0.229
MA0042.1	MA0042.1	0.273
MA0043.1	MA0043.1	0.516
MA0046.1	MA0046.1	0.00356
MA0047.2	MA0047.2	0.262
MA0048.1	MA0048.1	0.0157
MA0050.1	MA0050.1	0.0303
MA0051.1	MA0051.1	0.266
MA0052.1	MA0052.1	0.226
MA0055.1	MA0055.1	0.0682
MA0057.1	MA0057.1	0.508
MA0058.1	MA0058.1	0.803
MA0059.1	MA0059.1	0.173
MA0060.1	MA0060.1	2.02139e-12
MA0061.1	MA0061.1	0.475
MA0062.2	MA0062.2	8.90253e-4
MA0065.2	MA0065.2	0.0375
MA0066.1	MA0066.1	0.438
MA0067.1	MA0067.1	0.358
MA0068.1	MA0068.1	0.28
MA0069.1	MA0069.1	0.0323
MA0070.1	MA0070.1	0.856
MA0071.1	MA0071.1	0.975
MA0072.1	MA0072.1	0.621
MA0073.1	MA0073.1	0.354
MA0074.1	MA0074.1	0.669
MA0076.1	MA0076.1	3.94537e-6
MA0077.1	MA0077.1	0.821
MA0078.1	MA0078.1	0.368
MA0079.2	MA0079.2	0.427
MA0080.2	MA0080.2	2.00247e-9
MA0081.1	MA0081.1	0.0507
MA0083.1	MA0083.1	0.143
MA0084.1	MA0084.1	0.448
MA0087.1	MA0087.1	0.147
MA0088.1	MA0088.1	0.135
MA0090.1	MA0090.1	0.371
MA0091.1	MA0091.1	0.0167
MA0092.1	MA0092.1	0.654
MA0093.1	MA0093.1	0.425
MA0099.2	MA0099.2	0.00881
MA0100.1	MA0100.1	0.14
MA0101.1	MA0101.1	0.445
MA0102.2	MA0102.2	0.0155
MA0103.1	MA0103.1	0.00932
MA0104.2	MA0104.2	0.0887
MA0105.1	MA0105.1	0.224
MA0106.1	MA0106.1	0.986
MA0107.1	MA0107.1	0.995
MA0108.2	MA0108.2	0.946
MA0111.1	MA0111.1	0.464
MA0112.2	MA0112.2	0.0772
MA0113.1	MA0113.1	0.328
MA0114.1	MA0114.1	0.0212
MA0115.1	MA0115.1	0.522
MA0116.1	MA0116.1	0.0573
MA0117.1	MA0117.1	0.29
MA0119.1	MA0119.1	0.612
MA0122.1	MA0122.1	0.834
MA0124.1	MA0124.1	0.893
MA0125.1	MA0125.1	0.122
MA0131.1	MA0131.1	0.122
MA0135.1	MA0135.1	0.0215
MA0136.1	MA0136.1	5.16327e-8
MA0137.2	MA0137.2	0.703
MA0138.2	MA0138.2	0.0346
MA0139.1	MA0139.1	0.311
MA0140.1	MA0140.1	0.82
MA0141.1	MA0141.1	0.507
MA0142.1	MA0142.1	0.151
MA0143.1	MA0143.1	0.292
MA0144.1	MA0144.1	0.862
MA0145.1	MA0145.1	0.156
MA0146.1	MA0146.1	0.104
MA0147.1	MA0147.1	0.0211
MA0148.1	MA0148.1	0.6
MA0149.1	MA0149.1	0.302
MA0150.1	MA0150.1	0.498
MA0152.1	MA0152.1	0.333
MA0153.1	MA0153.1	0.319
MA0154.1	MA0154.1	0.00313
MA0155.1	MA0155.1	0.175
MA0156.1	MA0156.1	0.0437
MA0157.1	MA0157.1	0.289
MA0159.1	MA0159.1	0.552
MA0160.1	MA0160.1	0.171
MA0162.1	MA0162.1	0.483
MA0163.1	MA0163.1	0.559
MA0164.1	MA0164.1	0.236
MA0258.1	MA0258.1	0.263
MA0259.1	MA0259.1	9.03572e-4

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11856

Novel motif	Logo	P-value
1	1	0.39
10	10	0.805
100	100	0.298
101	101	0.4
102	102	0.649
103	103	0.671
104	104	0.725
105	105	0.0401
106	106	0.0959
107	107	0.665
108	108	0.221
109	109	0.442
11	11	0.822
110	110	0.963
111	111	0.204
112	112	0.468
113	113	0.105
114	114	0.997
115	115	0.669
116	116	0.542
117	117	0.988
118	118	0.418
119	119	0.761
12	12	0.258
120	120	0.989
121	121	0.607
122	122	0.383
123	123	0.34
124	124	0.272
125	125	0.348
126	126	0.621
127	127	0.619
128	128	0.282
129	129	0.398
13	13	0.801
130	130	0.276
131	131	0.0524
132	132	0.605
133	133	0.658
134	134	0.772
135	135	0.00784
136	136	0.0878
137	137	0.0969
138	138	0.691
139	139	0.945
14	14	0.0818
140	140	0.0665
141	141	0.135
142	142	0.757
143	143	0.296
144	144	0.698
145	145	0.964
146	146	0.286
147	147	0.446
148	148	0.14
149	149	0.228
15	15	0.983
150	150	0.238
151	151	0.93
152	152	0.182
153	153	0.908
154	154	0.249
155	155	0.427
156	156	0.998
157	157	0.715
158	158	0.204
159	159	0.108
16	16	0.696
160	160	0.155
161	161	0.745
162	162	0.315
163	163	0.852
164	164	0.93
165	165	0.464
166	166	0.626
167	167	0.305
168	168	0.193
169	169	0.0394
17	17	0.486
18	18	0.454
19	19	0.285
2	2	0.7
20	20	0.169
21	21	0.542
22	22	0.0341
23	23	0.558
24	24	0.623
25	25	0.51
26	26	0.42
27	27	0.0213
28	28	0.844
29	29	0.347
3	3	0.563
30	30	0.37
31	31	0.656
32	32	6.28583e-4
33	33	0.557
34	34	0.195
35	35	0.772
36	36	0.834
37	37	0.548
38	38	0.512
39	39	0.538
4	4	0.182
40	40	0.735
41	41	0.0434
42	42	0.776
43	43	0.254
44	44	0.694
45	45	0.392
46	46	0.916
47	47	0.978
48	48	0.665
49	49	0.628
5	5	0.176
50	50	0.877
51	51	0.548
52	52	0.154
53	53	0.714
54	54	0.899
55	55	0.666
56	56	0.851
57	57	0.999
58	58	0.195
59	59	0.362
6	6	0.344
60	60	0.277
61	61	0.858
62	62	0.367
63	63	0.886
64	64	0.703
65	65	0.422
66	66	6.48234e-5
67	67	0.091
68	68	0.949
69	69	0.817
7	7	0.121
70	70	0.241
71	71	0.821
72	72	0.143
73	73	0.396
74	74	0.914
75	75	0.432
76	76	0.762
77	77	0.563
78	78	0.589
79	79	0.515
8	8	0.998
80	80	0.0225
81	81	0.657
82	82	0.472
83	83	0.471
84	84	0.818
85	85	0.0316
86	86	0.845
87	87	0.117
88	88	0.636
89	89	0.172
9	9	0.00704
90	90	0.905
91	91	0.0917
92	92	0.833
93	93	0.992
94	94	0.759
95	95	0.996
96	96	0.656
97	97	0.416
98	98	0.0132
99	99	0.418

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11856

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100400 sarcoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007873
+|DRA_sample_Accession=CAGE@SAMD00005548
-|accession_numbers=CAGE;DRX007979;DRR008851;DRZ000276;DRZ001661
+|accession_numbers=CAGE;DRX007979;DRR008851;DRZ000276;DRZ001661;DRZ011626;DRZ013011
 |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!1.77!57.69!PAX8;;chr12:66218255..66218304,+!p3@HMGA2!1.54!88.35!HMGA2;;chr19:9609272..9609297,-!p1@ZNF560!1.35!21.38!ZNF560;;chr11:46299199..46299233,+!p1@CREB3L1!1.28!91.17!CREB3L1;;chr7:28448965..28448994,+!p2@CREB5!1.25!57.89!CREB5;;chr6:45390025..45390076,+!p2@RUNX2!1.24!38.93!RUNX2;;chr6:45390300..45390335,+!p4@RUNX2!1.23!24.81!RUNX2;;chr8:67525443..67525459,-!p2@MYBL1!1.22!23.40!MYBL1;;chr17:46703687..46703740,-!p1@HOXB9!1.17!13.92!HOXB9;;chr2:200322654..200322707,-!p2@SATB2!1.16!19.36!SATB2;;chr1:44513995..44514031,+!p1@KLF17!1.16!13.31!KLF17;;chr3:69811882..69811898,+!p6@MITF!1.10!11.70!MITF;;chr6:45390002..45390023,+!p6@RUNX2!1.09!19.77!RUNX2;;chr3:69811858..69811881,+!p5@MITF!1.08!11.09!MITF;;chr20:50179368..50179392,-!p2@NFATC2!1.06!13.72!NFATC2;;chr6:45390077..45390105,+!p9@RUNX2!1.06!13.51!RUNX2;;chr12:66218212..66218244,+!p5@HMGA2!1.04!14.72!HMGA2;;chr6:28321909..28321965,-!p3@ZNF323!1.04!10.09!ZNF323;;chr7:19157043..19157088,-!p2@TWIST1!1.01!23.40!TWIST1;;chr8:23540441..23540466,-!p1@NKX3-1!1.01!18.96!NKX3-1;;chr5:72744445..72744466,-!p2@FOXD1!1.01!15.53!FOXD1;;chr6:45390269..45390298,+!p5@RUNX2!1.01!15.33!RUNX2;;chr12:54380404..54380433,+!p3@HOXC10!1.01!9.28!HOXC10;;chr12:80085061..80085119,-!p6@PAWR!0.98!13.72!PAWR;;chr14:62162285..62162296,+!p3@HIF1A!0.97!44.98!HIF1A;;chr12:26277817..26277863,-!p2@BHLHE41!0.97!11.50!BHLHE41;;chr7:27169801..27169844,-!p2@HOXA4!0.96!8.07!HOXA4;;chr9:16705069..16705086,-!p3@BNC2!0.96!8.07!BNC2;;chr8:49833948..49833973,-!p2@SNAI2!0.95!52.24!SNAI2;;chr11:65686802..65686818,+!p6@DRAP1!0.95!14.12!DRAP1;;chr17:46622229..46622257,-!p6@HOXB2!0.95!9.28!HOXB2;;chr8:49833978..49833996,-!p1@SNAI2!0.94!164.59!SNAI2;;chr12:80084303..80084332,-!p1@PAWR!0.94!47.40!PAWR;;chr19:22817119..22817145,+!p1@ZNF492!0.93!12.71!ZNF492;;chr20:55204351..55204377,+!p1@TFAP2C!0.93!9.68!TFAP2C;;chr6:45390399..45390418,+!p15@RUNX2!0.93!7.46!RUNX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.91!7.66!GLIS1;;chr12:26277956..26277980,-!p1@BHLHE41!0.90!26.22!BHLHE41;;chr15:83953397..83953425,-!p1@BNC1!0.90!8.07!BNC1;;chr6:28321971..28321995,-!p1@ZNF323!0.90!6.86!ZNF323;;chr8:67525473..67525518,-!p1@MYBL1!0.88!15.53!MYBL1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.87!59.50!PPP1R13L;;chr12:66218598..66218645,+!p2@HMGA2!0.87!31.06!HMGA2;;chr12:80084737..80084763,-!p3@PAWR!0.87!25.01!PAWR;;chr12:54447599..54447630,+!p3@HOXC4!0.87!8.07!HOXC4;;chr17:38020392..38020477,-!p1@IKZF3!0.86!6.25!IKZF3;;chr14:62162258..62162269,+!p2@HIF1A!0.85!61.92!HIF1A;;chr11:65686732..65686756,+!p2@DRAP1!0.85!27.03!DRAP1;;chr5:137804405..137804444,+!p3@EGR1!0.85!7.46!EGR1;;chr7:96654026..96654061,-!p2@DLX5!0.85!6.05!DLX5;;chr5:158526917..158526932,-!p1@EBF1!0.84!15.33!EBF1;;chr19:22193731..22193751,-!p1@ZNF208!0.84!5.85!ZNF208;;chr7:28725740..28725778,+!p1@CREB5!0.83!55.27!CREB5;;chr5:72744594..72744609,-!p1@FOXD1!0.82!27.63!FOXD1;;chr7:27205106..27205134,-!p2@HOXA9!0.82!5.65!HOXA9;;chr7:96654133..96654150,-!p1@DLX5!0.82!5.65!DLX5;;chr19:22605136..22605154,-!p1@ZNF98!0.82!5.65!ZNF98;;chr2:10183651..10183713,+!p1@KLF11!0.81!42.96!KLF11;;chr6:10412600..10412637,-!p1@TFAP2A!0.81!9.48!TFAP2A;;chr12:66218378..66218401,+!p6@HMGA2!0.81!8.67!HMGA2;;chr3:71630980..71631110,-!p3@FOXP1!0.80!19.97!FOXP1;;chr2:102091566..102091581,-!p1@RFX8!0.80!5.24!RFX8;;chr1:119530493..119530572,-!p1@TBX15!0.80!5.24!TBX15;;chr17:35294075..35294102,+!p1@ENST00000559335!0.80!5.24!LHX1;;chr20:39317868..39317884,-!p1@MAFB!0.79!67.37!MAFB;;chr11:46299539..46299620,+!p2@CREB3L1!0.79!9.08!CREB3L1;;chr5:72743793..72743855,-!p4@FOXD1!0.78!6.05!FOXD1;;chr12:54380036..54380091,+!p4@HOXC10!0.78!5.04!HOXC10;;chr1:25291475..25291511,-!p2@RUNX3!0.78!5.04!RUNX3;;chr2:176994408..176994492,+!p1@HOXD8!0.78!5.04!HOXD8;;chr17:45928443..45928473,-!p2@SP6!0.78!5.04!SP6;;chr1:40105299..40105326,-!p1@HEYL!0.77!4.84!HEYL;;chr12:26277929..26277955,-!p3@BHLHE41!0.76!7.06!BHLHE41;;chr9:4300050..4300118,-!p1@GLIS3!0.75!33.28!GLIS3;;chr20:42543441..42543497,+!p1@TOX2!0.75!22.79!TOX2;;chr14:61116183..61116208,-!p1@SIX1!0.75!19.36!SIX1;;chr12:80084279..80084293,-!p8@PAWR!0.75!8.07!PAWR;;chr8:40755333..40755352,-!p1@ZMAT4!0.75!4.64!ZMAT4;;chr2:28615716..28615733,+!p1@FOSL2!0.74!240.23!FOSL2;;chr2:176973498..176973524,+!p1@HOXD10!0.74!4.44!HOXD10;;chr5:2751762..2751784,-!p1@IRX2!0.74!4.44!IRX2;;chr12:80084167..80084197,-!p5@PAWR!0.73!11.09!PAWR;;chr3:141087144..141087170,+!p11@ZBTB38!0.73!5.65!ZBTB38;;chr14:62203595..62203676,+!p4@HIF1A!0.72!8.47!HIF1A;;chr3:25469724..25469773,+!p1@RARB!0.72!6.45!RARB;;chr3:157823517..157823562,-!p1@SHOX2!0.72!4.64!SHOX2;;chr17:46703942..46703964,-!p4@HOXB9!0.72!4.24!HOXB9;;chr12:80085120..80085156,-!p14@PAWR!0.72!4.24!PAWR;;chr19:47523058..47523114,+!p1@NPAS1!0.72!4.24!NPAS1;;chr20:42295745..42295765,+!p1@MYBL2!0.71!77.05!MYBL2;;chr16:54320675..54320715,-!p1@IRX3!0.71!9.68!IRX3;;chr12:66218183..66218209,+!p4@HMGA2!0.71!8.47!HMGA2;;chr15:80696703..80696754,+!p1@ARNT2!0.71!5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@@ Line 39: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pagetoid%2520sarcoma%2520cell%2520line%253aHs%2520925%252eT.CNhs11856.10732-110B3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pagetoid%2520sarcoma%2520cell%2520line%253aHs%2520925%252eT.CNhs11856.10732-110B3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pagetoid%2520sarcoma%2520cell%2520line%253aHs%2520925%252eT.CNhs11856.10732-110B3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/pagetoid%2520sarcoma%2520cell%2520line%253aHs%2520925%252eT.CNhs11856.10732-110B3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/pagetoid%2520sarcoma%2520cell%2520line%253aHs%2520925%252eT.CNhs11856.10732-110B3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10732-110B3
 |is_a=EFO:0002091;;FF:0000210;;FF:0100400
 |is_obsolete=
 |library_id=CNhs11856
-|library_ids=CNhs11856
+|library_id_phase_based=2:CNhs11856
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10732
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10732
 |name=pagetoid sarcoma cell line:Hs 925.T
 |namespace=FANTOM5
@@ Line 49: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11856,LSID830,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 88: / Line 99: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10732-110B3;search_select_hide=table117:FF:10732-110B3
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FF:10732-110B3: Difference between revisions

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Latest revision as of 15:02, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0