FF:10732-110B3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005548 | ||
|accession_numbers=CAGE;DRX007979;DRR008851;DRZ000276;DRZ001661;DRZ011626;DRZ013011 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1115 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100400 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0100400 | |fonse_cell_line=FF:0100400 | ||
|fonse_cell_line_closure=FF:0100400 | |fonse_cell_line_closure=FF:0100400 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pagetoid%2520sarcoma%2520cell%2520line%253aHs%2520925%252eT.CNhs11856.10732-110B3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pagetoid%2520sarcoma%2520cell%2520line%253aHs%2520925%252eT.CNhs11856.10732-110B3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pagetoid%2520sarcoma%2520cell%2520line%253aHs%2520925%252eT.CNhs11856.10732-110B3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/pagetoid%2520sarcoma%2520cell%2520line%253aHs%2520925%252eT.CNhs11856.10732-110B3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/pagetoid%2520sarcoma%2520cell%2520line%253aHs%2520925%252eT.CNhs11856.10732-110B3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10732-110B3 | |id=FF:10732-110B3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100400 | ||
|is_obsolete= | |||
|library_id=CNhs11856 | |||
|library_id_phase_based=2:CNhs11856 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10732 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10732 | |||
|name=pagetoid sarcoma cell line:Hs 925.T | |name=pagetoid sarcoma cell line:Hs 925.T | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11856,LSID830,release010,COMPLETED | |profile_hcage=CNhs11856,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.184119520313716,0,0.351227829631648,0.077088231014348,0,0,0,0,0,0,0,0,0,0,0,0,0,0.669351140727088,0,0,0.0398989464991893,0,0,0.0492267130232409,0,0.0398989464991893,0.123958365472501,0,0,0,0,0,0,0,0,0,0,0,0,0.395797031432388,0.06716614102266,0,0,0,0,0,0,0,0.0493772835328148,0,0,0,0,0,0.0701422354695485,0.0797978929983786,0.0501922480486932,0,0,0.108162581853338,0,0,0,0,0,0,0,0,0.205506209066435,0,0,0,0,0,0,0,0,0.092719042679538,0,0,0.119365219277223,0,0,0,0.13159089434536,0,0,0,-0.0968475421398933,-0.00257447298009558,0.0398989464991893,0.256914955251363,0.142652051032407,0.302877316018104,0.31921050819384,0.115714561741374,0,0,0,0,0,0,0.0797978929983786,0,0,0,0.593665630960513,0,0,0,0,0,0,-0.096373593922461,0.0797978929983786,0,0,0.21459395837864,0.295696093695367,0,0,0.0797978929983786,0,0,0.147184609291298 | |||
|repeat_enrich_byname=0,0,0,0.147184609291298,0.31921050819384,0,0.302877316018104,0.582503228399471,0.0797978929983786,0,0,0,0,0.256914955251363,0,0,-0.0416726662191296,0,0.0336018042339041,0.113399812727891,0.0398989464991893,0,0.294755830231523,0,0,0,0,0,0,0.0797978929983786,0,0,-0.128119866952565,0,0.206502403662048,0.0797978929983786,0,0.0642497913541947,0,0.0212736654153387,-0.305472230898407,0,0.10522610728787,0.0114536319210104,0,0,0,0,-0.156749418189486,0,-0.041081590795362,0.261717382076685,0.256914955251363,0.074879003698337,-0.04680465889238,0,0,0,-0.164284672286075,0.183732572430563,0,0,0.229181126694593,-0.0785965140274415,0,0,0.143040039133216,0,0.0561491379618538,-0.0369896504763306,0,0.0219747872104251,0,0,0,0,0,0,0,0.0797978929983786,0,0,0,-0.0175945203222473,0.152594009788621,0,0,0,0.00588307477386328,-0.0232744556530549,0.0797978929983786,0.0570102629034557,0.328635800936367,-0.0233282202563376,0.0178131341750958,0.128381747731846,0,0.177192879457677,-0.0220906798944334,-0.290717489195912,-0.0968475421398933,-0.147401849371139,0.0155244895165875,0,0.0607239373401467,0.161479475625896,0,0.0674527029338376,0.0152507909693866,-0.0636203619603073,-0.260256844653939,0.0797978929983786,0,0.062689431539476,-0.182640558837958,0.00293616154387744,0.0093033384871759,-0.0728688550452273,0.111451693861599,0,-0.219878820422526,-0.209146945500663,-0.0563793671576036,0.351697432786176,0.0766481677882561,0.0797978929983786,0.332788702098795,0.14279286743415,0.0797978929983786,0,-0.00179298635846935,-0.181084073585769,-0.198580313747133,0,-0.101611775529091,0.137161947989067,0,-0.020975671039172,0.127606936463059,0.302877316018104,0,0.202448535725395,0,0,0,0.00944145736280205,0.147184609291298,0.0213709934550852,0.179491440152414,0.0700217544625587,0,-0.18138993000313,0,-0.0178019119152068,0,-0.0927258989425573,0.00333544745562933,-0.123234073042377,0.0219281038839707,0.00184780664037776,-0.0741584641085006,-0.0918338354265597,-0.0851928033406242,-0.00514894596019116,0.14705938225461,0.105183575257824,-0.291134792318779,-0.0989565476981695,0.0593202157337861,-0.0147018775523613,0.391455773992302,0.0797978929983786,0.13682226034731,-0.171810108635612,0.0084179385758536,0.126251462270143,0,-0.0111607894730803,0,-0.169973255458617,0,-0.0443106216333152,-0.195996201073138,-0.136412058562583,-0.275165709824692,0,0.149948438736123,0.757029614974193,0,-0.0222587361350879,0,0.47958260646759,0.152510232683464,-0.0928679329910289,-0.0981591767197509,0.0630603255921362,0,0.262496769988989,0,0,0.297942823418268,0.0674012782537148,0.0797978929983786,-0.0149553226240078,0.092719042679538,0.042088282758894,0.0312135358563643,0,0,-0.342823021974621,0,0.0797978929983786,0.203364720429216,0.198051728437199,0.252638818752813,0.280758279198095,0,0.192053443371477,0,0.0797978929983786,-0.097729872966797,0,0.0604937614362365,0,0.0797978929983786,0.029602871838556,0,0,0,0,0.130593489815851,0,0,0,0,0,0,0,0.349042142873928,0.249994703305106,0,0.132623698831644,0.0398989464991893,0,0,0,0.0797978929983786,0,0,0.751218774455569,0.767748145612569,-0.0808302906657454,-0.0432195226780416,0,0,0,0,-0.215723402553475,0.304451460891189,0,0.250502979784258,0,0,0,0.0797978929983786,0.119365219277223,0,0,0.331150560698925,0,0.0894541522376344,-0.117916671162956,0,0,0,0.0259229144163131,0,0,0.147184609291298,0,-0.251331463595921,0,0.0797978929983786,0.210813664366169,0,-0.196636608904811,-0.00178398654846279,0,0.116655757964429,0.165234755161679,0.686140576679775,0,0,0.272737488894963,0,0.00551523119523475,-0.118891592678681,0,0.205506209066435,0.155420633232749,0,0,0,0,0.0797978929983786,0.205506209066435,-0.134516619401377,0.0398989464991893,0,0,0,0.382365686281889,0,0.256914955251363,0,0,0,0,-0.0179047907666909,-0.0124261636601318,0,0,0,0,0,0,0,-0.0241060230789031,-0.0568966981102707,0.0398989464991893,0,0,0,0,0.205506209066435,0,0,0.154635188174496,0.593665630960513,0,0,0,0,0.0501922480486932,0,0,0,0,0.154176462028696,0,0,0.503863634403293,0,0,0,0,0,0,0.0158805566133182,0,0,0,0,0,0,0.0821871230309871,0.258952740851736,0,0.0797978929983786,0,0,0,0,0,0.351227829631648,0,0,0,0,-0.113884373708977,0,0,0,0.402891638196756,0,0.184119520313716,0,0.0797978929983786,0,0.0398989464991893,0,0.109546801692848,0.073592304645649,0,0,0,0,0,0,0,0,0,0,0.0398989464991893,0,0,0,0.202537152014393,0.0302413547992103,0.130038343458637,0.00410474461943222,0,0,0.29750640336431,0,0,0,0,0,0,-0.031340424028527,0.0455902231034994,0,0,0,0,0,0,0.073592304645649,0,0,0,0,0,0,0,0,0,0,0.0797978929983786,0,0,0,0.0367122717772748,0,0,0.0122243771607343,0,0,0,0,0.0797978929983786,0,0,0.0492267130232409,0.0797978929983786,0,0.139177772358373,0,0,0,0,0.147184609291298,0,0.0448460714679895,0.250693703334859,0.129190785132427,0,0,0,0.176696217157679,0,0,0.124897286600124,0.0797978929983786,0.0130205055794773,0,0,0,0.0398989464991893,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0797978929983786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.669351140727088,0,0,0,0,0,0,0,0,0,0,0,0,0.172218775200051,0,0,0,0,0,0,0,0,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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=50.42019 | |rna_weight_ug=50.42019 | ||
|sample_age=58 | |sample_age=58 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=CRL-7677 | |sample_cell_catalog=CRL-7677 | ||
|sample_cell_line=Hs 925.T | |sample_cell_line=Hs 925.T | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.22220384307556e-265!GO:0043226;organelle;1.11169065623466e-222!GO:0043229;intracellular organelle;5.54798647236389e-222!GO:0043231;intracellular membrane-bound organelle;7.62452044920788e-220!GO:0043227;membrane-bound organelle;7.62452044920788e-220!GO:0005737;cytoplasm;1.10971231723112e-183!GO:0044422;organelle part;7.75795873909116e-152!GO:0044446;intracellular organelle part;3.9131087063087e-150!GO:0044444;cytoplasmic part;9.64580384908776e-129!GO:0032991;macromolecular complex;1.59327185743627e-101!GO:0005634;nucleus;5.0989893666411e-97!GO:0044237;cellular metabolic process;3.18946936039433e-96!GO:0044238;primary metabolic process;5.03580852315809e-96!GO:0043170;macromolecule metabolic process;8.76485627626513e-96!GO:0030529;ribonucleoprotein complex;1.40833171871113e-87!GO:0043233;organelle lumen;2.67239803438616e-79!GO:0031974;membrane-enclosed lumen;2.67239803438616e-79!GO:0044428;nuclear part;2.94633421893769e-79!GO:0005515;protein binding;3.67332525407536e-78!GO:0003723;RNA binding;2.45868789084525e-71!GO:0005739;mitochondrion;1.69902051225558e-61!GO:0043283;biopolymer metabolic process;7.28585211224712e-59!GO:0016043;cellular component organization and biogenesis;6.11042035119047e-56!GO:0010467;gene expression;1.58923611574893e-52!GO:0006396;RNA processing;2.42647198263426e-51!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.15070147250225e-51!GO:0031981;nuclear lumen;1.30644206007462e-50!GO:0043234;protein complex;1.33173694027337e-50!GO:0005840;ribosome;2.64004653166644e-50!GO:0006412;translation;1.38866167869716e-49!GO:0031090;organelle membrane;3.74178910241476e-49!GO:0019538;protein metabolic process;1.66491474166625e-48!GO:0033036;macromolecule localization;1.30486200669402e-46!GO:0015031;protein transport;1.62276706404905e-44!GO:0003735;structural constituent of ribosome;7.71089166706009e-44!GO:0044260;cellular macromolecule metabolic process;1.79105679966037e-43!GO:0044267;cellular protein metabolic process;1.07792961063358e-42!GO:0008104;protein localization;1.09485298657524e-42!GO:0045184;establishment of protein localization;1.21642722159341e-42!GO:0044429;mitochondrial part;1.060167671338e-40!GO:0016071;mRNA metabolic process;2.64344006422871e-39!GO:0046907;intracellular transport;1.17317206754457e-38!GO:0033279;ribosomal subunit;9.11692906444288e-38!GO:0008380;RNA splicing;3.2899978760147e-37!GO:0006996;organelle organization and biogenesis;4.14205073881223e-37!GO:0009059;macromolecule biosynthetic process;6.03813777452484e-37!GO:0031967;organelle envelope;6.80553363313751e-37!GO:0043228;non-membrane-bound organelle;8.63304648461724e-37!GO:0043232;intracellular non-membrane-bound organelle;8.63304648461724e-37!GO:0005829;cytosol;1.20048845270189e-36!GO:0031975;envelope;1.62411514021707e-36!GO:0009058;biosynthetic process;1.83761026005533e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.43491283347454e-35!GO:0044249;cellular biosynthetic process;1.50632676644503e-34!GO:0006397;mRNA processing;9.02307910503641e-34!GO:0003676;nucleic acid binding;5.27881297298349e-33!GO:0065003;macromolecular complex assembly;1.61073148196096e-31!GO:0006886;intracellular protein transport;2.05051776617387e-30!GO:0005654;nucleoplasm;5.99012864320747e-30!GO:0006259;DNA metabolic process;7.19558578286172e-29!GO:0022607;cellular component assembly;1.84009384693718e-28!GO:0051641;cellular localization;6.64417601011673e-28!GO:0051649;establishment of cellular localization;7.94737591229634e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.22198623687376e-27!GO:0016070;RNA metabolic process;4.64066161688088e-27!GO:0007049;cell cycle;5.48613287140958e-27!GO:0005681;spliceosome;6.79347849911271e-27!GO:0005740;mitochondrial envelope;9.40819124265518e-26!GO:0044451;nucleoplasm part;4.0052863338666e-24!GO:0031966;mitochondrial membrane;5.38933843572884e-24!GO:0000166;nucleotide binding;1.83416098836119e-23!GO:0044445;cytosolic part;6.09311125050032e-23!GO:0019866;organelle inner membrane;6.90993722610724e-23!GO:0005730;nucleolus;2.51035579830566e-22!GO:0012505;endomembrane system;2.39320560941338e-21!GO:0022402;cell cycle process;2.87966106702385e-21!GO:0022618;protein-RNA complex assembly;4.89047730692568e-21!GO:0005743;mitochondrial inner membrane;5.19193142278245e-21!GO:0016462;pyrophosphatase activity;5.19193142278245e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.82535002314205e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;1.18296044553942e-20!GO:0000278;mitotic cell cycle;2.08622842960038e-20!GO:0006119;oxidative phosphorylation;4.14832258860452e-20!GO:0017111;nucleoside-triphosphatase activity;4.20392493827688e-20!GO:0015934;large ribosomal subunit;5.12500526625338e-20!GO:0006457;protein folding;1.08978457683401e-19!GO:0015935;small ribosomal subunit;6.82687907687494e-19!GO:0044455;mitochondrial membrane part;1.06838045657604e-18!GO:0005783;endoplasmic reticulum;1.12966310200048e-18!GO:0048770;pigment granule;5.64229597208344e-18!GO:0042470;melanosome;5.64229597208344e-18!GO:0016874;ligase activity;5.64229597208344e-18!GO:0031980;mitochondrial lumen;8.9776143479198e-18!GO:0005759;mitochondrial matrix;8.9776143479198e-18!GO:0044265;cellular macromolecule catabolic process;8.9776143479198e-18!GO:0005794;Golgi apparatus;1.01548404328761e-17!GO:0032553;ribonucleotide binding;1.45359314325916e-17!GO:0032555;purine ribonucleotide binding;1.45359314325916e-17!GO:0008134;transcription factor binding;1.63144564626234e-17!GO:0043285;biopolymer catabolic process;2.46974886564787e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;4.88187455324514e-17!GO:0019941;modification-dependent protein catabolic process;1.04421756413071e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.04421756413071e-16!GO:0017076;purine nucleotide binding;1.5055225704164e-16!GO:0044257;cellular protein catabolic process;1.67726408474944e-16!GO:0006512;ubiquitin cycle;1.85292067295297e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.85292067295297e-16!GO:0048193;Golgi vesicle transport;2.47930108777946e-16!GO:0009057;macromolecule catabolic process;3.54551820775753e-16!GO:0006974;response to DNA damage stimulus;3.62712254907579e-16!GO:0016192;vesicle-mediated transport;6.91191828344961e-16!GO:0008135;translation factor activity, nucleic acid binding;6.96065776532583e-16!GO:0000502;proteasome complex (sensu Eukaryota);8.90092212697912e-16!GO:0042254;ribosome biogenesis and assembly;1.01343662219303e-15!GO:0005746;mitochondrial respiratory chain;2.00229814828248e-15!GO:0005524;ATP binding;2.47667528173908e-15!GO:0044432;endoplasmic reticulum part;2.64596008120479e-15!GO:0006605;protein targeting;3.29110511579451e-15!GO:0030163;protein catabolic process;5.57273666358866e-15!GO:0032559;adenyl ribonucleotide binding;5.64073331172994e-15!GO:0000087;M phase of mitotic cell cycle;6.17088786980953e-15!GO:0007067;mitosis;1.17318638400865e-14!GO:0044248;cellular catabolic process;1.17318638400865e-14!GO:0005761;mitochondrial ribosome;1.30588680396819e-14!GO:0000313;organellar ribosome;1.30588680396819e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.47564938707809e-14!GO:0022403;cell cycle phase;1.49149680119425e-14!GO:0005694;chromosome;1.86566525489784e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.17401398993157e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.19795266571532e-14!GO:0003954;NADH dehydrogenase activity;2.19795266571532e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.19795266571532e-14!GO:0043412;biopolymer modification;2.9560408243013e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;2.9560408243013e-14!GO:0000375;RNA splicing, via transesterification reactions;2.9560408243013e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.9560408243013e-14!GO:0051082;unfolded protein binding;3.02554588186989e-14!GO:0030554;adenyl nucleotide binding;8.24882102572735e-14!GO:0051301;cell division;1.12950873872201e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.13022944069374e-13!GO:0006281;DNA repair;2.2970915799672e-13!GO:0050794;regulation of cellular process;3.99404612242065e-13!GO:0006413;translational initiation;5.4602909704737e-13!GO:0012501;programmed cell death;6.33437961074605e-13!GO:0051276;chromosome organization and biogenesis;9.91765859323758e-13!GO:0006915;apoptosis;1.32151791476668e-12!GO:0044427;chromosomal part;1.60775275702799e-12!GO:0051726;regulation of cell cycle;1.84158486006533e-12!GO:0051186;cofactor metabolic process;1.8822273911101e-12!GO:0000074;regulation of progression through cell cycle;2.06352683956296e-12!GO:0003743;translation initiation factor activity;2.18611547903805e-12!GO:0006464;protein modification process;2.36775093448469e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.74044316086374e-12!GO:0045271;respiratory chain complex I;2.74044316086374e-12!GO:0005747;mitochondrial respiratory chain complex I;2.74044316086374e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.26583916851774e-12!GO:0042773;ATP synthesis coupled electron transport;3.26583916851774e-12!GO:0005635;nuclear envelope;4.75991437816914e-12!GO:0016604;nuclear body;5.85306084766183e-12!GO:0006446;regulation of translational initiation;7.06033227882439e-12!GO:0008219;cell death;8.07498284142604e-12!GO:0016265;death;8.07498284142604e-12!GO:0006913;nucleocytoplasmic transport;8.17755231918431e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.16456616467396e-12!GO:0031965;nuclear membrane;1.5521174826654e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.57552797865085e-11!GO:0005793;ER-Golgi intermediate compartment;1.68682435971071e-11!GO:0000279;M phase;2.22826121304987e-11!GO:0051169;nuclear transport;2.22826121304987e-11!GO:0009719;response to endogenous stimulus;3.63295515842257e-11!GO:0006399;tRNA metabolic process;5.72244326091392e-11!GO:0016887;ATPase activity;5.75957307921561e-11!GO:0006260;DNA replication;7.44995494078548e-11!GO:0043687;post-translational protein modification;8.08069425734916e-11!GO:0044453;nuclear membrane part;9.56827318964325e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;9.67796121666769e-11!GO:0003712;transcription cofactor activity;1.1326833805097e-10!GO:0004386;helicase activity;1.2278424088444e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.28471857433385e-10!GO:0048523;negative regulation of cellular process;1.61635472768385e-10!GO:0006366;transcription from RNA polymerase II promoter;2.04860100269898e-10!GO:0008639;small protein conjugating enzyme activity;2.61635390344599e-10!GO:0042623;ATPase activity, coupled;2.67069476679497e-10!GO:0005789;endoplasmic reticulum membrane;3.54991837680616e-10!GO:0006323;DNA packaging;3.75684555144856e-10!GO:0019787;small conjugating protein ligase activity;4.01862306114128e-10!GO:0004842;ubiquitin-protein ligase activity;5.77086113787188e-10!GO:0006364;rRNA processing;8.30796420346453e-10!GO:0017038;protein import;8.93777868554147e-10!GO:0008026;ATP-dependent helicase activity;1.68436854064363e-09!GO:0009259;ribonucleotide metabolic process;1.87067256763347e-09!GO:0006732;coenzyme metabolic process;1.87999641227093e-09!GO:0006163;purine nucleotide metabolic process;2.08692334216198e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.26496351014537e-09!GO:0009055;electron carrier activity;2.46981317650407e-09!GO:0016072;rRNA metabolic process;2.53762000497776e-09!GO:0043067;regulation of programmed cell death;2.61893696272483e-09!GO:0042981;regulation of apoptosis;2.99777376922525e-09!GO:0008565;protein transporter activity;3.08180859649744e-09!GO:0006164;purine nucleotide biosynthetic process;3.29651925272397e-09!GO:0050789;regulation of biological process;3.35579188307429e-09!GO:0005643;nuclear pore;4.00442748440076e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.43680349520576e-09!GO:0004812;aminoacyl-tRNA ligase activity;4.43680349520576e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.43680349520576e-09!GO:0016881;acid-amino acid ligase activity;5.13561786759259e-09!GO:0016607;nuclear speck;5.21611655068485e-09!GO:0006461;protein complex assembly;5.51348353643284e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.95536547189847e-09!GO:0043038;amino acid activation;7.72816939876091e-09!GO:0006418;tRNA aminoacylation for protein translation;7.72816939876091e-09!GO:0043039;tRNA aminoacylation;7.72816939876091e-09!GO:0019222;regulation of metabolic process;7.98181493229646e-09!GO:0005768;endosome;8.1441306274801e-09!GO:0048519;negative regulation of biological process;8.50605008422847e-09!GO:0009056;catabolic process;9.27597122754774e-09!GO:0009260;ribonucleotide biosynthetic process;9.36918061718521e-09!GO:0015630;microtubule cytoskeleton;9.5646222383215e-09!GO:0044431;Golgi apparatus part;9.6468922708154e-09!GO:0009150;purine ribonucleotide metabolic process;9.98312960945895e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.59663034505523e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.75921401875973e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.18113116755679e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.65158362456085e-08!GO:0006403;RNA localization;2.91210770321518e-08!GO:0065002;intracellular protein transport across a membrane;2.91210770321518e-08!GO:0030120;vesicle coat;3.46270703258354e-08!GO:0030662;coated vesicle membrane;3.46270703258354e-08!GO:0050657;nucleic acid transport;5.7373442759536e-08!GO:0051236;establishment of RNA localization;5.7373442759536e-08!GO:0050658;RNA transport;5.7373442759536e-08!GO:0005788;endoplasmic reticulum lumen;6.01150477415935e-08!GO:0048475;coated membrane;6.73458920982939e-08!GO:0030117;membrane coat;6.73458920982939e-08!GO:0005667;transcription factor complex;7.52552081578849e-08!GO:0051246;regulation of protein metabolic process;9.69399833235936e-08!GO:0043069;negative regulation of programmed cell death;1.14810433437388e-07!GO:0006916;anti-apoptosis;1.42348044971e-07!GO:0003924;GTPase activity;1.43044820266803e-07!GO:0000785;chromatin;1.48014899560404e-07!GO:0015986;ATP synthesis coupled proton transport;1.94813966897588e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.94813966897588e-07!GO:0000245;spliceosome assembly;2.05268228340327e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.47133853943451e-07!GO:0016740;transferase activity;2.51963189638315e-07!GO:0031324;negative regulation of cellular metabolic process;2.53910023626569e-07!GO:0043566;structure-specific DNA binding;2.58569091619775e-07!GO:0007005;mitochondrion organization and biogenesis;2.70706871533172e-07!GO:0009141;nucleoside triphosphate metabolic process;2.73949563489847e-07!GO:0046930;pore complex;2.77123348844152e-07!GO:0016568;chromatin modification;2.84402555174373e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.09573120263955e-07!GO:0043066;negative regulation of apoptosis;3.21637973002265e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.05095305214522e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.05095305214522e-07!GO:0016564;transcription repressor activity;4.37930039200747e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.4386240518472e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.4386240518472e-07!GO:0003697;single-stranded DNA binding;4.4906750477838e-07!GO:0016779;nucleotidyltransferase activity;4.64372229423592e-07!GO:0003714;transcription corepressor activity;5.40107728113563e-07!GO:0065004;protein-DNA complex assembly;6.9879862646799e-07!GO:0009060;aerobic respiration;7.39336238304258e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.45345049639688e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.45345049639688e-07!GO:0000139;Golgi membrane;7.73317537161746e-07!GO:0006333;chromatin assembly or disassembly;8.00101938256868e-07!GO:0019829;cation-transporting ATPase activity;9.79760967356753e-07!GO:0045786;negative regulation of progression through cell cycle;1.05435276476291e-06!GO:0051170;nuclear import;1.15973015265993e-06!GO:0031988;membrane-bound vesicle;1.26264498808139e-06!GO:0043623;cellular protein complex assembly;1.30646260320051e-06!GO:0005819;spindle;1.31938547832216e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.65788671148616e-06!GO:0006793;phosphorus metabolic process;1.70396800671337e-06!GO:0006796;phosphate metabolic process;1.70396800671337e-06!GO:0051028;mRNA transport;1.95272637955353e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.0773700451018e-06!GO:0051329;interphase of mitotic cell cycle;2.16713990215406e-06!GO:0006606;protein import into nucleus;2.21441525141672e-06!GO:0046034;ATP metabolic process;2.36765908865981e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.37740133269704e-06!GO:0000075;cell cycle checkpoint;2.37863380322292e-06!GO:0051188;cofactor biosynthetic process;2.40370700613104e-06!GO:0005798;Golgi-associated vesicle;2.46390318626596e-06!GO:0009117;nucleotide metabolic process;2.58368592770703e-06!GO:0045259;proton-transporting ATP synthase complex;2.84399498316119e-06!GO:0031323;regulation of cellular metabolic process;2.96813506203871e-06!GO:0044440;endosomal part;3.05511007059718e-06!GO:0010008;endosome membrane;3.05511007059718e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.18057062789327e-06!GO:0006754;ATP biosynthetic process;3.21429317097878e-06!GO:0006753;nucleoside phosphate metabolic process;3.21429317097878e-06!GO:0009892;negative regulation of metabolic process;3.40327487276665e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.55120013211922e-06!GO:0031252;leading edge;3.56122833046434e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.69127939192142e-06!GO:0051325;interphase;3.96632536160276e-06!GO:0007010;cytoskeleton organization and biogenesis;4.02496038066829e-06!GO:0016469;proton-transporting two-sector ATPase complex;4.35725274481704e-06!GO:0003899;DNA-directed RNA polymerase activity;4.66810583595604e-06!GO:0006099;tricarboxylic acid cycle;5.31611255382969e-06!GO:0046356;acetyl-CoA catabolic process;5.31611255382969e-06!GO:0051187;cofactor catabolic process;6.57298225765336e-06!GO:0032446;protein modification by small protein conjugation;6.61737738047369e-06!GO:0003724;RNA helicase activity;6.68551795508676e-06!GO:0005770;late endosome;7.02642955255293e-06!GO:0031982;vesicle;7.64971067376484e-06!GO:0045333;cellular respiration;7.90985354009134e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.81445230146983e-06!GO:0005813;centrosome;8.89881991858706e-06!GO:0000151;ubiquitin ligase complex;9.38859660458865e-06!GO:0016787;hydrolase activity;9.60033454692742e-06!GO:0016310;phosphorylation;1.03758488670592e-05!GO:0016567;protein ubiquitination;1.08260817548418e-05!GO:0006613;cotranslational protein targeting to membrane;1.13028185644376e-05!GO:0008361;regulation of cell size;1.13903588654474e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.14322156827841e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.23265191809203e-05!GO:0006350;transcription;1.30801528276522e-05!GO:0009109;coenzyme catabolic process;1.40970814946116e-05!GO:0031410;cytoplasmic vesicle;1.51778116764414e-05!GO:0000775;chromosome, pericentric region;1.56285188008881e-05!GO:0005762;mitochondrial large ribosomal subunit;1.65197123647817e-05!GO:0000315;organellar large ribosomal subunit;1.65197123647817e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.70545946009259e-05!GO:0016049;cell growth;1.70545946009259e-05!GO:0030133;transport vesicle;1.76354143286864e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.94348466585984e-05!GO:0007051;spindle organization and biogenesis;1.98707215535767e-05!GO:0004298;threonine endopeptidase activity;2.03737074563253e-05!GO:0016853;isomerase activity;2.09225532621669e-05!GO:0006752;group transfer coenzyme metabolic process;2.46009930468944e-05!GO:0005815;microtubule organizing center;2.60143947599166e-05!GO:0006261;DNA-dependent DNA replication;2.61821120927849e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.72631773949549e-05!GO:0006084;acetyl-CoA metabolic process;2.81925536052855e-05!GO:0001558;regulation of cell growth;3.45916406250985e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.52844289049467e-05!GO:0005048;signal sequence binding;4.02398646546286e-05!GO:0051427;hormone receptor binding;4.25252239433069e-05!GO:0016859;cis-trans isomerase activity;4.43888705289429e-05!GO:0030867;rough endoplasmic reticulum membrane;4.47836579641601e-05!GO:0016563;transcription activator activity;5.1122719163241e-05!GO:0005773;vacuole;5.293737696505e-05!GO:0005525;GTP binding;5.38923821215188e-05!GO:0065007;biological regulation;5.98480990448163e-05!GO:0009108;coenzyme biosynthetic process;6.30930011073853e-05!GO:0051789;response to protein stimulus;8.02201318129176e-05!GO:0006986;response to unfolded protein;8.02201318129176e-05!GO:0010468;regulation of gene expression;8.02227880264424e-05!GO:0000314;organellar small ribosomal subunit;8.37273342442143e-05!GO:0005763;mitochondrial small ribosomal subunit;8.37273342442143e-05!GO:0006334;nucleosome assembly;8.69229000298213e-05!GO:0035257;nuclear hormone receptor binding;9.02690444543734e-05!GO:0005769;early endosome;9.27285773027674e-05!GO:0044452;nucleolar part;9.27841915066734e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000113223647654824!GO:0016481;negative regulation of transcription;0.000125816624823093!GO:0000323;lytic vacuole;0.000127149848526063!GO:0005764;lysosome;0.000127149848526063!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000127368719105132!GO:0008092;cytoskeletal protein binding;0.000129913935958774!GO:0045454;cell redox homeostasis;0.000129981028099916!GO:0043021;ribonucleoprotein binding;0.000130366400647465!GO:0031497;chromatin assembly;0.000180829225351543!GO:0048471;perinuclear region of cytoplasm;0.0001928410322491!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000196145059153042!GO:0019899;enzyme binding;0.00019618823002927!GO:0005905;coated pit;0.000201658632041295!GO:0051168;nuclear export;0.000205214905688365!GO:0008186;RNA-dependent ATPase activity;0.000226095428021319!GO:0005874;microtubule;0.000242560061165132!GO:0007093;mitotic cell cycle checkpoint;0.000265219063498308!GO:0008250;oligosaccharyl transferase complex;0.000270104281166626!GO:0000082;G1/S transition of mitotic cell cycle;0.000279706937412503!GO:0033116;ER-Golgi intermediate compartment membrane;0.000287291351693339!GO:0030036;actin cytoskeleton organization and biogenesis;0.000294862706851391!GO:0003713;transcription coactivator activity;0.000383825651978762!GO:0032774;RNA biosynthetic process;0.00038432927130851!GO:0019843;rRNA binding;0.000394607965133538!GO:0030663;COPI coated vesicle membrane;0.000394607965133538!GO:0030126;COPI vesicle coat;0.000394607965133538!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000396519712911535!GO:0007243;protein kinase cascade;0.000401186542157441!GO:0003682;chromatin binding;0.000435343728021403!GO:0006351;transcription, DNA-dependent;0.000439349963453292!GO:0032561;guanyl ribonucleotide binding;0.000443818144255139!GO:0019001;guanyl nucleotide binding;0.000443818144255139!GO:0007088;regulation of mitosis;0.000464198704029766!GO:0043065;positive regulation of apoptosis;0.0004908411213855!GO:0016363;nuclear matrix;0.000501578597989705!GO:0003690;double-stranded DNA binding;0.000523831544989735!GO:0048522;positive regulation of cellular process;0.000541704258173658!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000544766062454696!GO:0005657;replication fork;0.000580171805522111!GO:0005885;Arp2/3 protein complex;0.000612903571112586!GO:0018196;peptidyl-asparagine modification;0.000621084386503789!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000621084386503789!GO:0031968;organelle outer membrane;0.000635543581740161!GO:0043068;positive regulation of programmed cell death;0.000636793329935617!GO:0043681;protein import into mitochondrion;0.000643041076512357!GO:0004004;ATP-dependent RNA helicase activity;0.000655960328851054!GO:0019867;outer membrane;0.000660442278248026!GO:0006891;intra-Golgi vesicle-mediated transport;0.000665057961027027!GO:0001726;ruffle;0.000683249590155294!GO:0007050;cell cycle arrest;0.000686663144200246!GO:0006626;protein targeting to mitochondrion;0.000686663144200246!GO:0004576;oligosaccharyl transferase activity;0.000689374495091901!GO:0008654;phospholipid biosynthetic process;0.000711489007160701!GO:0006612;protein targeting to membrane;0.000750832320478478!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000780158782236033!GO:0045045;secretory pathway;0.000784130391884833!GO:0003729;mRNA binding;0.000892183143373691!GO:0030137;COPI-coated vesicle;0.000905353969900565!GO:0005791;rough endoplasmic reticulum;0.000915372778563622!GO:0016044;membrane organization and biogenesis;0.000972869524123249!GO:0005741;mitochondrial outer membrane;0.000991234592333703!GO:0005684;U2-dependent spliceosome;0.00100921468983988!GO:0006839;mitochondrial transport;0.00103552283964313!GO:0008094;DNA-dependent ATPase activity;0.00106971138132796!GO:0008033;tRNA processing;0.00115804514083172!GO:0006383;transcription from RNA polymerase III promoter;0.00115967272573826!GO:0006302;double-strand break repair;0.00116970239494651!GO:0000059;protein import into nucleus, docking;0.00121946614220689!GO:0044262;cellular carbohydrate metabolic process;0.00126709081332165!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0013176226968044!GO:0051052;regulation of DNA metabolic process;0.00146929644958249!GO:0007017;microtubule-based process;0.00147124336105236!GO:0009165;nucleotide biosynthetic process;0.00153648182890302!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00153648182890302!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00153648182890302!GO:0008022;protein C-terminus binding;0.00156145324503092!GO:0030134;ER to Golgi transport vesicle;0.00157349546324048!GO:0015980;energy derivation by oxidation of organic compounds;0.00159664297291014!GO:0030880;RNA polymerase complex;0.00162483017898899!GO:0051920;peroxiredoxin activity;0.00162997126589682!GO:0008139;nuclear localization sequence binding;0.00170143165112368!GO:0031072;heat shock protein binding;0.00170901554718714!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00170901554718714!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00170901554718714!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00170901554718714!GO:0000776;kinetochore;0.00172395600205912!GO:0032940;secretion by cell;0.00172395600205912!GO:0009112;nucleobase metabolic process;0.00173384775779945!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.001743803750058!GO:0030658;transport vesicle membrane;0.0017761468826963!GO:0006414;translational elongation;0.00177656974079405!GO:0030127;COPII vesicle coat;0.00178750235381182!GO:0012507;ER to Golgi transport vesicle membrane;0.00178750235381182!GO:0030029;actin filament-based process;0.00179062574693846!GO:0040008;regulation of growth;0.00180592068168113!GO:0048500;signal recognition particle;0.00184565231190654!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00189583373433365!GO:0016197;endosome transport;0.00207249875641156!GO:0016126;sterol biosynthetic process;0.00209283075186779!GO:0045449;regulation of transcription;0.00213239180834069!GO:0007006;mitochondrial membrane organization and biogenesis;0.00215723898148162!GO:0003678;DNA helicase activity;0.00226282712662123!GO:0046474;glycerophospholipid biosynthetic process;0.00234414787660564!GO:0006402;mRNA catabolic process;0.00237435911434976!GO:0030027;lamellipodium;0.00259028243453538!GO:0006401;RNA catabolic process;0.00265979092244901!GO:0016272;prefoldin complex;0.00270035241561716!GO:0004674;protein serine/threonine kinase activity;0.00276169269467964!GO:0003684;damaged DNA binding;0.00281485293961334!GO:0000049;tRNA binding;0.00296431989276349!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00304426386994347!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00304426386994347!GO:0016491;oxidoreductase activity;0.00315241059427114!GO:0030176;integral to endoplasmic reticulum membrane;0.00325348537640185!GO:0046489;phosphoinositide biosynthetic process;0.0032789751663561!GO:0007052;mitotic spindle organization and biogenesis;0.00335105850800173!GO:0015631;tubulin binding;0.00335155467702513!GO:0051252;regulation of RNA metabolic process;0.00377542466233781!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00381405504189896!GO:0000428;DNA-directed RNA polymerase complex;0.00381405504189896!GO:0003711;transcription elongation regulator activity;0.00381405504189896!GO:0042802;identical protein binding;0.00383605252738781!GO:0030660;Golgi-associated vesicle membrane;0.00387068101839883!GO:0030132;clathrin coat of coated pit;0.00389365411942569!GO:0006310;DNA recombination;0.00390939954692458!GO:0030118;clathrin coat;0.00390939954692458!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00391727138138014!GO:0006892;post-Golgi vesicle-mediated transport;0.0041760941928242!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00429231781090021!GO:0046483;heterocycle metabolic process;0.00432216460526968!GO:0006695;cholesterol biosynthetic process;0.00450110740082977!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00465510166159509!GO:0043284;biopolymer biosynthetic process;0.00473083889345919!GO:0031124;mRNA 3'-end processing;0.00475337308290837!GO:0006611;protein export from nucleus;0.00539244775388984!GO:0006352;transcription initiation;0.00541145627367151!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00552055221180696!GO:0045047;protein targeting to ER;0.00552055221180696!GO:0006144;purine base metabolic process;0.00574363083856587!GO:0006672;ceramide metabolic process;0.00605024591193429!GO:0031902;late endosome membrane;0.0060938735560881!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0062845071038808!GO:0046519;sphingoid metabolic process;0.00636035237586368!GO:0035258;steroid hormone receptor binding;0.00636287612364499!GO:0008312;7S RNA binding;0.00700624675402769!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00704645064091499!GO:0045892;negative regulation of transcription, DNA-dependent;0.00704645064091499!GO:0043624;cellular protein complex disassembly;0.00749986248721937!GO:0005637;nuclear inner membrane;0.00765795970497506!GO:0000792;heterochromatin;0.00776258028449196!GO:0031625;ubiquitin protein ligase binding;0.0079900915944429!GO:0043488;regulation of mRNA stability;0.00814633414130476!GO:0043487;regulation of RNA stability;0.00814633414130476!GO:0051087;chaperone binding;0.00830541005578329!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00830541005578329!GO:0048468;cell development;0.00867687687873255!GO:0032984;macromolecular complex disassembly;0.00885054454708537!GO:0043414;biopolymer methylation;0.00898514844774582!GO:0006355;regulation of transcription, DNA-dependent;0.00935425388295136!GO:0048487;beta-tubulin binding;0.00963553752473734!GO:0005876;spindle microtubule;0.00976611617311282!GO:0006509;membrane protein ectodomain proteolysis;0.0097920960955014!GO:0033619;membrane protein proteolysis;0.0097920960955014!GO:0008629;induction of apoptosis by intracellular signals;0.00998534051638922!GO:0031901;early endosome membrane;0.0102795582748412!GO:0007040;lysosome organization and biogenesis;0.0104002276404238!GO:0030521;androgen receptor signaling pathway;0.0104260666039401!GO:0065009;regulation of a molecular function;0.0104707854122105!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0107907239813907!GO:0000910;cytokinesis;0.0109731570281739!GO:0043022;ribosome binding;0.0111947042391518!GO:0006284;base-excision repair;0.0113088938922626!GO:0005832;chaperonin-containing T-complex;0.0113300401746907!GO:0006650;glycerophospholipid metabolic process;0.0113300401746907!GO:0022415;viral reproductive process;0.0114438104725402!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0115129112512078!GO:0006275;regulation of DNA replication;0.0115593625776188!GO:0043241;protein complex disassembly;0.0117919390861989!GO:0008047;enzyme activator activity;0.0118076714885003!GO:0006595;polyamine metabolic process;0.0118915122886528!GO:0006917;induction of apoptosis;0.0119622253487829!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0119622253487829!GO:0015002;heme-copper terminal oxidase activity;0.0119622253487829!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0119622253487829!GO:0004129;cytochrome-c oxidase activity;0.0119622253487829!GO:0045936;negative regulation of phosphate metabolic process;0.0119978669352405!GO:0006091;generation of precursor metabolites and energy;0.0120255147572542!GO:0005669;transcription factor TFIID complex;0.0126654076365723!GO:0030308;negative regulation of cell growth;0.0126697142347033!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.012922660261604!GO:0006740;NADPH regeneration;0.0129315606478577!GO:0006098;pentose-phosphate shunt;0.0129315606478577!GO:0016741;transferase activity, transferring one-carbon groups;0.0131586114441921!GO:0032508;DNA duplex unwinding;0.0131586114441921!GO:0032392;DNA geometric change;0.0131586114441921!GO:0005862;muscle thin filament tropomyosin;0.0131917801772377!GO:0003779;actin binding;0.0133785238694707!GO:0003746;translation elongation factor activity;0.0133785238694707!GO:0045893;positive regulation of transcription, DNA-dependent;0.0133785238694707!GO:0000118;histone deacetylase complex;0.0134773564965029!GO:0006007;glucose catabolic process;0.0135131987682094!GO:0006417;regulation of translation;0.0135709938798429!GO:0045792;negative regulation of cell size;0.0139048646370358!GO:0030659;cytoplasmic vesicle membrane;0.0139048646370358!GO:0031529;ruffle organization and biogenesis;0.0139419800455446!GO:0043433;negative regulation of transcription factor activity;0.0139615874518712!GO:0000339;RNA cap binding;0.0143494553047413!GO:0050178;phenylpyruvate tautomerase activity;0.0143494553047413!GO:0008168;methyltransferase activity;0.0144498428088516!GO:0051101;regulation of DNA binding;0.0152426493496623!GO:0016251;general RNA polymerase II transcription factor activity;0.0155078958242142!GO:0051540;metal cluster binding;0.0155455576894714!GO:0051536;iron-sulfur cluster binding;0.0155455576894714!GO:0031543;peptidyl-proline dioxygenase activity;0.0155997164991476!GO:0004518;nuclease activity;0.015625729162439!GO:0042326;negative regulation of phosphorylation;0.0156529062935408!GO:0012502;induction of programmed cell death;0.0156704783414009!GO:0008180;signalosome;0.0157572605402345!GO:0003677;DNA binding;0.0157584143812142!GO:0000287;magnesium ion binding;0.0159904082009724!GO:0051059;NF-kappaB binding;0.0167172875952549!GO:0032259;methylation;0.0169080444806277!GO:0006378;mRNA polyadenylation;0.0170421624507317!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.017106563741237!GO:0015399;primary active transmembrane transporter activity;0.017106563741237!GO:0030119;AP-type membrane coat adaptor complex;0.017106563741237!GO:0046983;protein dimerization activity;0.0171816535571166!GO:0015992;proton transport;0.0175004823268155!GO:0006818;hydrogen transport;0.0178962890233328!GO:0019798;procollagen-proline dioxygenase activity;0.0180158741629443!GO:0030149;sphingolipid catabolic process;0.0180730186775911!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0182029452341181!GO:0031418;L-ascorbic acid binding;0.0185202206252862!GO:0008287;protein serine/threonine phosphatase complex;0.0185748155956778!GO:0022411;cellular component disassembly;0.0185828924066447!GO:0033673;negative regulation of kinase activity;0.0190814116025512!GO:0006469;negative regulation of protein kinase activity;0.0190814116025512!GO:0006338;chromatin remodeling;0.0197454551670592!GO:0046966;thyroid hormone receptor binding;0.0199066060726909!GO:0006506;GPI anchor biosynthetic process;0.0200151862502426!GO:0031371;ubiquitin conjugating enzyme complex;0.0200853819456565!GO:0046467;membrane lipid biosynthetic process;0.0202748003520584!GO:0005869;dynactin complex;0.0205807402376879!GO:0031123;RNA 3'-end processing;0.0205894089427913!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.021108694188108!GO:0030384;phosphoinositide metabolic process;0.0211363473893458!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0212080487962193!GO:0009116;nucleoside metabolic process;0.0218403006654178!GO:0032200;telomere organization and biogenesis;0.0221953950913348!GO:0000723;telomere maintenance;0.0221953950913348!GO:0006405;RNA export from nucleus;0.0221953950913348!GO:0006497;protein amino acid lipidation;0.0222276805678923!GO:0004003;ATP-dependent DNA helicase activity;0.0223978651201573!GO:0004527;exonuclease activity;0.0224019272447903!GO:0046870;cadmium ion binding;0.0228613378336754!GO:0006950;response to stress;0.0237262872332603!GO:0006268;DNA unwinding during replication;0.0238423805236666!GO:0045941;positive regulation of transcription;0.0239204971301868!GO:0031577;spindle checkpoint;0.0241191278709273!GO:0022890;inorganic cation transmembrane transporter activity;0.0241262430723051!GO:0006778;porphyrin metabolic process;0.0242066830948153!GO:0033013;tetrapyrrole metabolic process;0.0242066830948153!GO:0043189;H4/H2A histone acetyltransferase complex;0.0243648660736317!GO:0030145;manganese ion binding;0.0244064330678791!GO:0000152;nuclear ubiquitin ligase complex;0.024698668510601!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0247707386287824!GO:0050681;androgen receptor binding;0.0248755437802367!GO:0008538;proteasome activator activity;0.0253924555391766!GO:0030131;clathrin adaptor complex;0.0257456961006264!GO:0042770;DNA damage response, signal transduction;0.0258179399639703!GO:0007033;vacuole organization and biogenesis;0.02626163574898!GO:0006505;GPI anchor metabolic process;0.0267966611998131!GO:0005801;cis-Golgi network;0.027104734129381!GO:0051348;negative regulation of transferase activity;0.027104734129381!GO:0000209;protein polyubiquitination;0.0272027129847206!GO:0003756;protein disulfide isomerase activity;0.0277530741190059!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0277530741190059!GO:0030032;lamellipodium biogenesis;0.0278470533732151!GO:0001666;response to hypoxia;0.0279352885622072!GO:0031575;G1/S transition checkpoint;0.0280712380897612!GO:0003923;GPI-anchor transamidase activity;0.0281198595607189!GO:0016255;attachment of GPI anchor to protein;0.0281198595607189!GO:0042765;GPI-anchor transamidase complex;0.0281198595607189!GO:0006376;mRNA splice site selection;0.0281557863911303!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0281557863911303!GO:0022408;negative regulation of cell-cell adhesion;0.0284220932773906!GO:0016408;C-acyltransferase activity;0.0284220932773906!GO:0044433;cytoplasmic vesicle part;0.0284220932773906!GO:0012506;vesicle membrane;0.0285258799404329!GO:0030125;clathrin vesicle coat;0.0287279821640644!GO:0030665;clathrin coated vesicle membrane;0.0287279821640644!GO:0046426;negative regulation of JAK-STAT cascade;0.0287279821640644!GO:0051539;4 iron, 4 sulfur cluster binding;0.029734263216947!GO:0006607;NLS-bearing substrate import into nucleus;0.0298960637575639!GO:0033239;negative regulation of amine metabolic process;0.0307525484127561!GO:0045763;negative regulation of amino acid metabolic process;0.0307525484127561!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0307525484127561!GO:0035267;NuA4 histone acetyltransferase complex;0.0319391099805099!GO:0008601;protein phosphatase type 2A regulator activity;0.0321678397228511!GO:0006541;glutamine metabolic process;0.0323008387567122!GO:0000725;recombinational repair;0.03239401368559!GO:0000724;double-strand break repair via homologous recombination;0.03239401368559!GO:0008017;microtubule binding;0.03239401368559!GO:0030496;midbody;0.03239401368559!GO:0003702;RNA polymerase II transcription factor activity;0.03239401368559!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.03239401368559!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.03239401368559!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.03239401368559!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0327345355568111!GO:0046914;transition metal ion binding;0.0330477969262809!GO:0006897;endocytosis;0.0330477969262809!GO:0010324;membrane invagination;0.0330477969262809!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0332125230971911!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0336499239759427!GO:0007059;chromosome segregation;0.0336550156226342!GO:0008270;zinc ion binding;0.0342698398842411!GO:0007030;Golgi organization and biogenesis;0.0343693688755477!GO:0042158;lipoprotein biosynthetic process;0.0348709998960711!GO:0030911;TPR domain binding;0.0350992235484542!GO:0005875;microtubule associated complex;0.0350992235484542!GO:0008632;apoptotic program;0.0352454352254474!GO:0001952;regulation of cell-matrix adhesion;0.0355041688212186!GO:0000786;nucleosome;0.0359680665144979!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0361379519383754!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0361379519383754!GO:0016791;phosphoric monoester hydrolase activity;0.0361611069205932!GO:0019318;hexose metabolic process;0.0369243027683969!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0370560199531012!GO:0004177;aminopeptidase activity;0.0372382037323915!GO:0006730;one-carbon compound metabolic process;0.0375020709923276!GO:0009889;regulation of biosynthetic process;0.0380846139752608!GO:0022406;membrane docking;0.0381077633973435!GO:0048278;vesicle docking;0.0381077633973435!GO:0019079;viral genome replication;0.0381929637540262!GO:0005784;translocon complex;0.0382999188477109!GO:0031326;regulation of cellular biosynthetic process;0.0383979341569557!GO:0006520;amino acid metabolic process;0.0384992267111724!GO:0051287;NAD binding;0.039302271907891!GO:0005938;cell cortex;0.0396288536472063!GO:0008610;lipid biosynthetic process;0.0402151550878294!GO:0019206;nucleoside kinase activity;0.0405523857093591!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0408377190725154!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0410215362643!GO:0016584;nucleosome positioning;0.0411230598890465!GO:0007346;regulation of progression through mitotic cell cycle;0.041623300809893!GO:0004860;protein kinase inhibitor activity;0.0416899512889026!GO:0046822;regulation of nucleocytoplasmic transport;0.0416899512889026!GO:0016301;kinase activity;0.0422178747537258!GO:0008637;apoptotic mitochondrial changes;0.0428347410105362!GO:0005851;eukaryotic translation initiation factor 2B complex;0.043342620269696!GO:0005758;mitochondrial intermembrane space;0.043342620269696!GO:0005996;monosaccharide metabolic process;0.043342620269696!GO:0030433;ER-associated protein catabolic process;0.0435324372428988!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0435324372428988!GO:0007264;small GTPase mediated signal transduction;0.044358563191903!GO:0047485;protein N-terminus binding;0.0443604289583346!GO:0019783;small conjugating protein-specific protease activity;0.04465001793124!GO:0035035;histone acetyltransferase binding;0.0446729311487581!GO:0000159;protein phosphatase type 2A complex;0.0446729311487581!GO:0043130;ubiquitin binding;0.0453271407034287!GO:0032182;small conjugating protein binding;0.0453271407034287!GO:0048518;positive regulation of biological process;0.0457754376943242!GO:0004185;serine carboxypeptidase activity;0.0460656618058622!GO:0006360;transcription from RNA polymerase I promoter;0.0461567716817141!GO:0030508;thiol-disulfide exchange intermediate activity;0.0470590438143279!GO:0032906;transforming growth factor-beta2 production;0.0472054122609592!GO:0032909;regulation of transforming growth factor-beta2 production;0.0472054122609592!GO:0006739;NADP metabolic process;0.0474811053287893!GO:0040029;regulation of gene expression, epigenetic;0.0475058411299176!GO:0006289;nucleotide-excision repair;0.0478584459923937!GO:0031570;DNA integrity checkpoint;0.0480240802683142!GO:0005774;vacuolar membrane;0.0481349897262251!GO:0051235;maintenance of localization;0.0482250735741372!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0484373746247308!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0485608111228636!GO:0051098;regulation of binding;0.0488877116218991!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0492185371177108!GO:0043495;protein anchor;0.0492185371177108!GO:0006984;ER-nuclear signaling pathway;0.0492185371177108!GO:0004843;ubiquitin-specific protease activity;0.0492185371177108!GO:0006354;RNA elongation;0.0492339555841008!GO:0009303;rRNA transcription;0.0494971379720407 | |||
|sample_id=10732 | |sample_id=10732 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=HIF1A:2.10319958271;NKX3-1:1.71079580563;PAX4:1.22211574347;ATF6:1.18126229056;HOX{A4,D4}:1.17800940195;TOPORS:1.14126292358;GFI1:1.11983098654;PITX1..3:1.10890462677;PPARG:1.0451800397;ELK1,4_GABP{A,B1}:1.00265453323;DBP:0.981019179789;POU3F1..4:0.975862852472;EVI1:0.912564458502;NKX2-1,4:0.890868498022;HOXA9_MEIS1:0.885676629962;EN1,2:0.883886290131;ZNF143:0.804801289463;AHR_ARNT_ARNT2:0.757144307883;FOXP1:0.745271187923;NR6A1:0.740401219812;NKX2-3_NKX2-5:0.697789711335;UFEwm:0.683571373511;HOX{A5,B5}:0.668255860186;IKZF2:0.646151573846;TFDP1:0.614001443768;NFY{A,B,C}:0.577184443767;AIRE:0.542045362406;XBP1:0.538998092064;TAL1_TCF{3,4,12}:0.474022825737;bHLH_family:0.466208641949;ZIC1..3:0.456811107487;GTF2A1,2:0.429041611828;SOX17:0.421021722465;TEAD1:0.411348235294;MYBL2:0.37896600512;ZNF384:0.373970944797;E2F1..5:0.367659297558;STAT5{A,B}:0.348622006507;ZBTB16:0.348162410453;GFI1B:0.31394103943;BACH2:0.295900869882;VSX1,2:0.290406222336;PAX3,7:0.267355257357;TEF:0.247137018916;SRF:0.228824120434;NFIX:0.204514941537;MYB:0.198934967176;IKZF1:0.196797540606;TFAP2B:0.186816095795;STAT1,3:0.18510673459;STAT2,4,6:0.179584477408;MTF1:0.169589691098;NKX3-2:0.159323270043;ONECUT1,2:0.155465305351;FOS_FOS{B,L1}_JUN{B,D}:0.15409575551;ZNF148:0.150566071416;ADNP_IRX_SIX_ZHX:0.144863949068;POU5F1:0.140248389203;NRF1:0.13799645858;ZFP161:0.125467281904;NFE2:0.123184225989;HIC1:0.112603687697;PAX5:0.111684340752;NFKB1_REL_RELA:0.111237604275;PRDM1:0.104435255611;POU1F1:0.0995697972482;SP1:0.0957454880951;XCPE1{core}:0.0955000385464;RXR{A,B,G}:0.0760800172933;ZNF238:0.0664123261601;HLF:0.0619028439462;BREu{core}:0.0574504093383;MTE{core}:0.0397873521098;GLI1..3:0.0393361546561;ZNF423:0.0129317838006;FOSL2:0.00129498585933;AR:-0.0099037373975;RFX1:-0.0138856418958;MYFfamily:-0.0394794453042;NANOG{mouse}:-0.0456447906652;HES1:-0.0461639554314;HBP1_HMGB_SSRP1_UBTF:-0.0468349425543;FOXA2:-0.0474038992162;ATF4:-0.0569571037081;RUNX1..3:-0.0652457293307;FOXD3:-0.0868037922847;RXRA_VDR{dimer}:-0.0882840786422;ALX4:-0.0970632489954;POU6F1:-0.114065729606;MZF1:-0.114891096731;MAFB:-0.11888244363;ATF5_CREB3:-0.14307085513;HMGA1,2:-0.145812757415;NFE2L2:-0.145893741409;EBF1:-0.150636887954;NFE2L1:-0.160064256861;MED-1{core}:-0.16679331626;LHX3,4:-0.181719784752;ALX1:-0.186038022163;KLF4:-0.194804291606;EGR1..3:-0.20645981173;CREB1:-0.211427032436;TBP:-0.214296463297;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.21897202067;PAX8:-0.224300472012;JUN:-0.227840805517;SMAD1..7,9:-0.234327379091;HOX{A6,A7,B6,B7}:-0.249612971825;GTF2I:-0.258134222478;TLX1..3_NFIC{dimer}:-0.261326515825;SOX{8,9,10}:-0.262805492311;ARID5B:-0.26411569438;NR1H4:-0.274798394491;TFCP2:-0.289969054771;PAX2:-0.292819368077;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.293283454368;TBX4,5:-0.294853288034;FOXM1:-0.299512267589;ZBTB6:-0.299924686646;HNF1A:-0.3011050472;NKX6-1,2:-0.301509468453;NR5A1,2:-0.302165383287;MEF2{A,B,C,D}:-0.302233642656;MAZ:-0.312342755827;FOXN1:-0.322413838943;CDX1,2,4:-0.325346750766;HSF1,2:-0.347985443827;ELF1,2,4:-0.371426221681;HAND1,2:-0.371470405438;PATZ1:-0.378466232287;ATF2:-0.383308133811;CUX2:-0.385753906749;REST:-0.398735893011;CEBPA,B_DDIT3:-0.412065487529;SPI1:-0.436415643078;PDX1:-0.46078408471;IRF1,2:-0.46453613273;FOXL1:-0.477195540168;GATA6:-0.480057245366;EP300:-0.481560740832;PRRX1,2:-0.490479879044;TP53:-0.51034829983;RORA:-0.518178896485;TFAP4:-0.522339790613;POU2F1..3:-0.527888324206;LMO2:-0.534864957282;RBPJ:-0.537314380142;GCM1,2:-0.5396380816;CDC5L:-0.541845405104;ETS1,2:-0.542479588153;TFAP2{A,C}:-0.561273849073;DMAP1_NCOR{1,2}_SMARC:-0.580087289648;ZEB1:-0.583889461747;OCT4_SOX2{dimer}:-0.594210466867;YY1:-0.599065132455;LEF1_TCF7_TCF7L1,2:-0.60468004985;NFATC1..3:-0.630588645623;SPZ1:-0.633526165434;IRF7:-0.642506058466;NANOG:-0.651428309387;TLX2:-0.659555011179;CRX:-0.70596732794;FOX{F1,F2,J1}:-0.706189254743;HNF4A_NR2F1,2:-0.707137015473;SPIB:-0.712123455775;SOX2:-0.718469993585;GATA4:-0.720928369364;RFX2..5_RFXANK_RFXAP:-0.75423201534;NFIL3:-0.758834635552;NHLH1,2:-0.79422762111;PAX1,9:-0.820126115539;NR3C1:-0.823071393896;BPTF:-0.83630861948;SNAI1..3:-0.846196038555;SREBF1,2:-0.856470415385;T:-0.879713094017;FOXP3:-0.88591068494;PAX6:-0.886869467986;RREB1:-0.895969968298;FOX{D1,D2}:-0.909122260751;HMX1:-0.918148436862;MYOD1:-0.918717667066;SOX5:-0.946873426706;GZF1:-0.977263992096;NKX2-2,8:-0.994047540189;ESRRA:-1.00370527681;ESR1:-1.00740918957;PBX1:-1.04901816725;TGIF1:-1.05054521454;FOXQ1:-1.19773283518;FOXO1,3,4:-1.40869839092;FOX{I1,J2}:-2.60214621306 | |top_motifs=HIF1A:2.10319958271;NKX3-1:1.71079580563;PAX4:1.22211574347;ATF6:1.18126229056;HOX{A4,D4}:1.17800940195;TOPORS:1.14126292358;GFI1:1.11983098654;PITX1..3:1.10890462677;PPARG:1.0451800397;ELK1,4_GABP{A,B1}:1.00265453323;DBP:0.981019179789;POU3F1..4:0.975862852472;EVI1:0.912564458502;NKX2-1,4:0.890868498022;HOXA9_MEIS1:0.885676629962;EN1,2:0.883886290131;ZNF143:0.804801289463;AHR_ARNT_ARNT2:0.757144307883;FOXP1:0.745271187923;NR6A1:0.740401219812;NKX2-3_NKX2-5:0.697789711335;UFEwm:0.683571373511;HOX{A5,B5}:0.668255860186;IKZF2:0.646151573846;TFDP1:0.614001443768;NFY{A,B,C}:0.577184443767;AIRE:0.542045362406;XBP1:0.538998092064;TAL1_TCF{3,4,12}:0.474022825737;bHLH_family:0.466208641949;ZIC1..3:0.456811107487;GTF2A1,2:0.429041611828;SOX17:0.421021722465;TEAD1:0.411348235294;MYBL2:0.37896600512;ZNF384:0.373970944797;E2F1..5:0.367659297558;STAT5{A,B}:0.348622006507;ZBTB16:0.348162410453;GFI1B:0.31394103943;BACH2:0.295900869882;VSX1,2:0.290406222336;PAX3,7:0.267355257357;TEF:0.247137018916;SRF:0.228824120434;NFIX:0.204514941537;MYB:0.198934967176;IKZF1:0.196797540606;TFAP2B:0.186816095795;STAT1,3:0.18510673459;STAT2,4,6:0.179584477408;MTF1:0.169589691098;NKX3-2:0.159323270043;ONECUT1,2:0.155465305351;FOS_FOS{B,L1}_JUN{B,D}:0.15409575551;ZNF148:0.150566071416;ADNP_IRX_SIX_ZHX:0.144863949068;POU5F1:0.140248389203;NRF1:0.13799645858;ZFP161:0.125467281904;NFE2:0.123184225989;HIC1:0.112603687697;PAX5:0.111684340752;NFKB1_REL_RELA:0.111237604275;PRDM1:0.104435255611;POU1F1:0.0995697972482;SP1:0.0957454880951;XCPE1{core}:0.0955000385464;RXR{A,B,G}:0.0760800172933;ZNF238:0.0664123261601;HLF:0.0619028439462;BREu{core}:0.0574504093383;MTE{core}:0.0397873521098;GLI1..3:0.0393361546561;ZNF423:0.0129317838006;FOSL2:0.00129498585933;AR:-0.0099037373975;RFX1:-0.0138856418958;MYFfamily:-0.0394794453042;NANOG{mouse}:-0.0456447906652;HES1:-0.0461639554314;HBP1_HMGB_SSRP1_UBTF:-0.0468349425543;FOXA2:-0.0474038992162;ATF4:-0.0569571037081;RUNX1..3:-0.0652457293307;FOXD3:-0.0868037922847;RXRA_VDR{dimer}:-0.0882840786422;ALX4:-0.0970632489954;POU6F1:-0.114065729606;MZF1:-0.114891096731;MAFB:-0.11888244363;ATF5_CREB3:-0.14307085513;HMGA1,2:-0.145812757415;NFE2L2:-0.145893741409;EBF1:-0.150636887954;NFE2L1:-0.160064256861;MED-1{core}:-0.16679331626;LHX3,4:-0.181719784752;ALX1:-0.186038022163;KLF4:-0.194804291606;EGR1..3:-0.20645981173;CREB1:-0.211427032436;TBP:-0.214296463297;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.21897202067;PAX8:-0.224300472012;JUN:-0.227840805517;SMAD1..7,9:-0.234327379091;HOX{A6,A7,B6,B7}:-0.249612971825;GTF2I:-0.258134222478;TLX1..3_NFIC{dimer}:-0.261326515825;SOX{8,9,10}:-0.262805492311;ARID5B:-0.26411569438;NR1H4:-0.274798394491;TFCP2:-0.289969054771;PAX2:-0.292819368077;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.293283454368;TBX4,5:-0.294853288034;FOXM1:-0.299512267589;ZBTB6:-0.299924686646;HNF1A:-0.3011050472;NKX6-1,2:-0.301509468453;NR5A1,2:-0.302165383287;MEF2{A,B,C,D}:-0.302233642656;MAZ:-0.312342755827;FOXN1:-0.322413838943;CDX1,2,4:-0.325346750766;HSF1,2:-0.347985443827;ELF1,2,4:-0.371426221681;HAND1,2:-0.371470405438;PATZ1:-0.378466232287;ATF2:-0.383308133811;CUX2:-0.385753906749;REST:-0.398735893011;CEBPA,B_DDIT3:-0.412065487529;SPI1:-0.436415643078;PDX1:-0.46078408471;IRF1,2:-0.46453613273;FOXL1:-0.477195540168;GATA6:-0.480057245366;EP300:-0.481560740832;PRRX1,2:-0.490479879044;TP53:-0.51034829983;RORA:-0.518178896485;TFAP4:-0.522339790613;POU2F1..3:-0.527888324206;LMO2:-0.534864957282;RBPJ:-0.537314380142;GCM1,2:-0.5396380816;CDC5L:-0.541845405104;ETS1,2:-0.542479588153;TFAP2{A,C}:-0.561273849073;DMAP1_NCOR{1,2}_SMARC:-0.580087289648;ZEB1:-0.583889461747;OCT4_SOX2{dimer}:-0.594210466867;YY1:-0.599065132455;LEF1_TCF7_TCF7L1,2:-0.60468004985;NFATC1..3:-0.630588645623;SPZ1:-0.633526165434;IRF7:-0.642506058466;NANOG:-0.651428309387;TLX2:-0.659555011179;CRX:-0.70596732794;FOX{F1,F2,J1}:-0.706189254743;HNF4A_NR2F1,2:-0.707137015473;SPIB:-0.712123455775;SOX2:-0.718469993585;GATA4:-0.720928369364;RFX2..5_RFXANK_RFXAP:-0.75423201534;NFIL3:-0.758834635552;NHLH1,2:-0.79422762111;PAX1,9:-0.820126115539;NR3C1:-0.823071393896;BPTF:-0.83630861948;SNAI1..3:-0.846196038555;SREBF1,2:-0.856470415385;T:-0.879713094017;FOXP3:-0.88591068494;PAX6:-0.886869467986;RREB1:-0.895969968298;FOX{D1,D2}:-0.909122260751;HMX1:-0.918148436862;MYOD1:-0.918717667066;SOX5:-0.946873426706;GZF1:-0.977263992096;NKX2-2,8:-0.994047540189;ESRRA:-1.00370527681;ESR1:-1.00740918957;PBX1:-1.04901816725;TGIF1:-1.05054521454;FOXQ1:-1.19773283518;FOXO1,3,4:-1.40869839092;FOX{I1,J2}:-2.60214621306 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10732-110B3;search_select_hide=table117:FF:10732-110B3 | |||
}} | }} | ||
Latest revision as of 15:02, 3 June 2020
| Name: | pagetoid sarcoma cell line:Hs 925.T |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11856 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11856
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11856
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.39 |
| 10 | 10 | 0.805 |
| 100 | 100 | 0.298 |
| 101 | 101 | 0.4 |
| 102 | 102 | 0.649 |
| 103 | 103 | 0.671 |
| 104 | 104 | 0.725 |
| 105 | 105 | 0.0401 |
| 106 | 106 | 0.0959 |
| 107 | 107 | 0.665 |
| 108 | 108 | 0.221 |
| 109 | 109 | 0.442 |
| 11 | 11 | 0.822 |
| 110 | 110 | 0.963 |
| 111 | 111 | 0.204 |
| 112 | 112 | 0.468 |
| 113 | 113 | 0.105 |
| 114 | 114 | 0.997 |
| 115 | 115 | 0.669 |
| 116 | 116 | 0.542 |
| 117 | 117 | 0.988 |
| 118 | 118 | 0.418 |
| 119 | 119 | 0.761 |
| 12 | 12 | 0.258 |
| 120 | 120 | 0.989 |
| 121 | 121 | 0.607 |
| 122 | 122 | 0.383 |
| 123 | 123 | 0.34 |
| 124 | 124 | 0.272 |
| 125 | 125 | 0.348 |
| 126 | 126 | 0.621 |
| 127 | 127 | 0.619 |
| 128 | 128 | 0.282 |
| 129 | 129 | 0.398 |
| 13 | 13 | 0.801 |
| 130 | 130 | 0.276 |
| 131 | 131 | 0.0524 |
| 132 | 132 | 0.605 |
| 133 | 133 | 0.658 |
| 134 | 134 | 0.772 |
| 135 | 135 | 0.00784 |
| 136 | 136 | 0.0878 |
| 137 | 137 | 0.0969 |
| 138 | 138 | 0.691 |
| 139 | 139 | 0.945 |
| 14 | 14 | 0.0818 |
| 140 | 140 | 0.0665 |
| 141 | 141 | 0.135 |
| 142 | 142 | 0.757 |
| 143 | 143 | 0.296 |
| 144 | 144 | 0.698 |
| 145 | 145 | 0.964 |
| 146 | 146 | 0.286 |
| 147 | 147 | 0.446 |
| 148 | 148 | 0.14 |
| 149 | 149 | 0.228 |
| 15 | 15 | 0.983 |
| 150 | 150 | 0.238 |
| 151 | 151 | 0.93 |
| 152 | 152 | 0.182 |
| 153 | 153 | 0.908 |
| 154 | 154 | 0.249 |
| 155 | 155 | 0.427 |
| 156 | 156 | 0.998 |
| 157 | 157 | 0.715 |
| 158 | 158 | 0.204 |
| 159 | 159 | 0.108 |
| 16 | 16 | 0.696 |
| 160 | 160 | 0.155 |
| 161 | 161 | 0.745 |
| 162 | 162 | 0.315 |
| 163 | 163 | 0.852 |
| 164 | 164 | 0.93 |
| 165 | 165 | 0.464 |
| 166 | 166 | 0.626 |
| 167 | 167 | 0.305 |
| 168 | 168 | 0.193 |
| 169 | 169 | 0.0394 |
| 17 | 17 | 0.486 |
| 18 | 18 | 0.454 |
| 19 | 19 | 0.285 |
| 2 | 2 | 0.7 |
| 20 | 20 | 0.169 |
| 21 | 21 | 0.542 |
| 22 | 22 | 0.0341 |
| 23 | 23 | 0.558 |
| 24 | 24 | 0.623 |
| 25 | 25 | 0.51 |
| 26 | 26 | 0.42 |
| 27 | 27 | 0.0213 |
| 28 | 28 | 0.844 |
| 29 | 29 | 0.347 |
| 3 | 3 | 0.563 |
| 30 | 30 | 0.37 |
| 31 | 31 | 0.656 |
| 32 | 32 | 6.28583e-4 |
| 33 | 33 | 0.557 |
| 34 | 34 | 0.195 |
| 35 | 35 | 0.772 |
| 36 | 36 | 0.834 |
| 37 | 37 | 0.548 |
| 38 | 38 | 0.512 |
| 39 | 39 | 0.538 |
| 4 | 4 | 0.182 |
| 40 | 40 | 0.735 |
| 41 | 41 | 0.0434 |
| 42 | 42 | 0.776 |
| 43 | 43 | 0.254 |
| 44 | 44 | 0.694 |
| 45 | 45 | 0.392 |
| 46 | 46 | 0.916 |
| 47 | 47 | 0.978 |
| 48 | 48 | 0.665 |
| 49 | 49 | 0.628 |
| 5 | 5 | 0.176 |
| 50 | 50 | 0.877 |
| 51 | 51 | 0.548 |
| 52 | 52 | 0.154 |
| 53 | 53 | 0.714 |
| 54 | 54 | 0.899 |
| 55 | 55 | 0.666 |
| 56 | 56 | 0.851 |
| 57 | 57 | 0.999 |
| 58 | 58 | 0.195 |
| 59 | 59 | 0.362 |
| 6 | 6 | 0.344 |
| 60 | 60 | 0.277 |
| 61 | 61 | 0.858 |
| 62 | 62 | 0.367 |
| 63 | 63 | 0.886 |
| 64 | 64 | 0.703 |
| 65 | 65 | 0.422 |
| 66 | 66 | 6.48234e-5 |
| 67 | 67 | 0.091 |
| 68 | 68 | 0.949 |
| 69 | 69 | 0.817 |
| 7 | 7 | 0.121 |
| 70 | 70 | 0.241 |
| 71 | 71 | 0.821 |
| 72 | 72 | 0.143 |
| 73 | 73 | 0.396 |
| 74 | 74 | 0.914 |
| 75 | 75 | 0.432 |
| 76 | 76 | 0.762 |
| 77 | 77 | 0.563 |
| 78 | 78 | 0.589 |
| 79 | 79 | 0.515 |
| 8 | 8 | 0.998 |
| 80 | 80 | 0.0225 |
| 81 | 81 | 0.657 |
| 82 | 82 | 0.472 |
| 83 | 83 | 0.471 |
| 84 | 84 | 0.818 |
| 85 | 85 | 0.0316 |
| 86 | 86 | 0.845 |
| 87 | 87 | 0.117 |
| 88 | 88 | 0.636 |
| 89 | 89 | 0.172 |
| 9 | 9 | 0.00704 |
| 90 | 90 | 0.905 |
| 91 | 91 | 0.0917 |
| 92 | 92 | 0.833 |
| 93 | 93 | 0.992 |
| 94 | 94 | 0.759 |
| 95 | 95 | 0.996 |
| 96 | 96 | 0.656 |
| 97 | 97 | 0.416 |
| 98 | 98 | 0.0132 |
| 99 | 99 | 0.418 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11856
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100400 sarcoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
