FF:10782-110G8: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005621 | |||
|accession_numbers=CAGE;DRX007920;DRR008792;DRZ000217;DRZ001602;DRZ011567;DRZ012952 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1115 | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1115 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100400,FF:0103744 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr12:124873852..124873881,-!p3@NCOR2!1.87!416.09!NCOR2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.84!68.33!HOXC5;;chr2:176969228..176969260,+!p1@HOXD11!1.75!55.55!HOXD11;;chr1:170632285..170632309,+!p1@PRRX1!1.66!50.26!PRRX1;;chr12:124873357..124873401,-!p1@NCOR2!1.64!470.95!NCOR2;;chr6:45296048..45296082,+!p1@RUNX2!1.55!39.02!RUNX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.54!33.57!ZBED1;;chr1:197886461..197886558,+!p1@LHX9!1.51!31.52!LHX9;;chr2:176969179..176969226,+!p2@HOXD11!1.50!30.33!HOXD11;;chr6:134210243..134210257,+!p1@TCF21!1.47!28.45!TCF21;;chr8:25902876..25902936,-!p1@EBF2!1.44!26.58!EBF2;;chr7:27192185..27192209,-!p1@HOXA3!1.33!20.62!HOXA3;;chr15:42749722..42749739,-!p2@ZFP106!1.31!34.76!ZFP106;;chr8:40755333..40755352,-!p1@ZMAT4!1.28!18.23!ZMAT4;;chr17:46682321..46682362,-!p1@HOXB6!1.26!17.04!HOXB6;;chr2:119605214..119605230,-!p1@EN1!1.26!17.04!EN1;;chr10:8096772..8096787,+!p2@GATA3!1.24!19.42!GATA3;;chr11:46299199..46299233,+!p1@CREB3L1!1.23!81.79!CREB3L1;;chr17:46690839..46690884,-!p1@HOXB8!1.23!15.85!HOXB8;;chr4:111558135..111558198,-!p2@PITX2!1.20!14.99!PITX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.19!14.48!HOXC5;;chr21:36421535..36421610,-!p2@RUNX1!1.18!49.58!RUNX1;;chr12:124873824..124873833,-!p19@NCOR2!1.18!13.97!NCOR2;;chr13:74708029..74708077,-!p2@KLF12!1.15!37.66!KLF12;;chr6:10415276..10415341,-!p2@TFAP2A!1.14!15.85!TFAP2A;;chr8:49833978..49833996,-!p1@SNAI2!1.09!231.22!SNAI2;;chr10:8096631..8096660,+!p1@GATA3!1.09!13.63!GATA3;;chr7:27205136..27205164,-!p1@HOXA9!1.09!11.42!HOXA9;;chr1:170632250..170632277,+!p7@PRRX1!1.09!11.42!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!1.08!70.88!SNAI2;;chr7:27224842..27224872,-!p1@HOXA11!1.08!10.90!HOXA11;;chr6:10412600..10412637,-!p1@TFAP2A!1.07!17.89!TFAP2A;;chr12:54402745..54402788,+!p1@HOXC8!1.07!10.73!HOXC8;;chr11:46299539..46299620,+!p2@CREB3L1!1.04!17.04!CREB3L1;;chr16:86600426..86600441,+!p1@FOXC2!1.02!23.51!FOXC2;;chr1:170633348..170633399,+!p2@PRRX1!1.02!13.12!PRRX1;;chr3:147111198..147111225,+!p4@ZIC1!1.00!9.03!ZIC1;;chr12:115122318..115122331,-!p2@TBX3!0.99!8.69!TBX3;;chr7:35293685..35293718,-!p1@TBX20!0.98!8.52!TBX20;;chr2:200322654..200322707,-!p2@SATB2!0.97!12.27!SATB2;;chr3:157823517..157823562,-!p1@SHOX2!0.97!8.86!SHOX2;;chr2:176969097..176969109,+!p3@HOXD11!0.97!8.35!HOXD11;;chr12:54393880..54393962,+!p1@HOXC9!0.97!8.35!HOXC9;;chr8:106330656..106330684,+!p1@ZFPM2!0.95!21.47!ZFPM2;;chr15:57511609..57511651,+!p2@TCF12!0.95!13.46!TCF12;;chr1:170633262..170633285,+!p3@PRRX1!0.95!9.20!PRRX1;;chr2:176969124..176969155,+!p5@HOXD11!0.95!8.01!HOXD11;;chr17:46688334..46688385,-!p1@HOXB7!0.94!11.42!HOXB7;;chr3:71630980..71631110,-!p3@FOXP1!0.93!27.09!FOXP1;;chr10:131762504..131762555,-!p1@EBF3!0.93!7.50!EBF3;;chr17:46691732..46691766,-!p4@HOXB8!0.93!7.50!HOXB8;;chr6:28321971..28321995,-!p1@ZNF323!0.93!7.50!ZNF323;;chr17:46687959..46688007,-!p2@HOXB7!0.92!10.39!HOXB7;;chr15:96869255..96869291,+!p6@NR2F2!0.91!13.29!NR2F2;;chr16:86544113..86544145,+!p1@FOXF1!0.91!8.86!FOXF1;;chr2:176994408..176994492,+!p1@HOXD8!0.91!7.16!HOXD8;;chr2:45236540..45236577,-!p1@SIX2!0.91!7.16!SIX2;;chr7:27153454..27153469,-!p2@HOXA3!0.91!7.16!HOXA3;;chr12:54402790..54402805,+!p2@HOXC8!0.90!6.99!HOXC8;;chr12:115121962..115121987,-!p1@TBX3!0.89!60.15!TBX3;;chr3:147127142..147127168,+!p1@ZIC1!0.89!6.82!ZIC1;;chr5:72744594..72744609,-!p1@FOXD1!0.88!31.69!FOXD1;;chr2:19558373..19558392,-!p1@OSR1!0.88!18.74!OSR1;;chr16:54320617..54320643,-!p3@IRX3!0.87!8.35!IRX3;;chr3:147111231..147111281,+!p3@ZIC1!0.87!6.47!ZIC1;;chr7:19157248..19157268,-!p1@TWIST1!0.86!18.23!TWIST1;;chr17:46622070..46622109,-!p1@HOXB2!0.86!14.48!HOXB2;;chr7:27205106..27205134,-!p2@HOXA9!0.86!6.30!HOXA9;;chr1:170632959..170632987,+!p4@PRRX1!0.85!6.82!PRRX1;;chr2:200323414..200323455,-!p1@SATB2!0.84!13.29!SATB2;;chr19:1592828..1592910,-!p2@MBD3!0.83!48.90!MBD3;;chr2:71127699..71127744,+!p1@VAX2!0.83!12.44!VAX2;;chr17:46622114..46622138,-!p4@HOXB2!0.83!9.03!HOXB2;;chr2:119604456..119604501,-!p2@EN1!0.82!5.62!EN1;;chr12:80085255..80085284,-!p9@PAWR!0.81!8.18!PAWR;;chr10:8095593..8095625,+!p3@GATA3!0.81!6.47!GATA3;;chr7:27142290..27142310,-!p1@HOXA2!0.79!5.11!HOXA2;;chr6:144329384..144329405,-!p1@PLAGL1!0.77!62.02!PLAGL1;;chr19:4066803..4066886,-!p1@ZBTB7A!0.77!57.93!ZBTB7A;;chr8:77593474..77593612,+!p1@ZFHX4!0.77!22.49!ZFHX4;;chr17:59477233..59477263,+!p1@TBX2!0.77!16.53!TBX2;;chr7:27196267..27196311,-!p1@HOXA7!0.77!4.94!HOXA7;;chr7:19157043..19157088,-!p2@TWIST1!0.76!12.95!TWIST1;;chr3:178789522..178789564,-!p2@ZMAT3!0.75!37.66!ZMAT3;;chr5:72744445..72744466,-!p2@FOXD1!0.75!8.18!FOXD1;;chr1:151032860..151032918,+!p1@MLLT11!0.74!59.81!MLLT11;;chr19:4067039..4067064,-!p3@ZBTB7A!0.74!14.31!ZBTB7A;;chr19:31840130..31840160,-!p2@TSHZ3!0.74!7.33!TSHZ3;;chr16:54320158..54320200,-!p5@IRX3!0.74!6.82!IRX3;;chr2:66662281..66662308,+!p1@MEIS1!0.73!16.53!MEIS1;;chr8:67525443..67525459,-!p2@MYBL1!0.73!6.82!MYBL1;;chr9:16870659..16870675,-!p2@BNC2!0.73!5.45!BNC2;;chr5:139492456..139492489,+!p7@PURA!0.73!4.43!PURA;;chr1:119530493..119530572,-!p1@TBX15!0.73!4.43!TBX15;;chr1:170632477..170632506,+!p6@PRRX1!0.73!4.43!PRRX1;;chr2:172949484..172949522,+!p1@DLX1!0.73!4.43!DLX1;;chr19:4065485..4065546,-!p2@ZBTB7A!0.72!42.26!ZBTB7A;;chr11:65686732..65686756,+!p2@DRAP1!0.72!19.94!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!0.72!5.62!DRAP1;;chr13:74707894..74707947,-!p6@KLF12!0.72!4.77!KLF12;;chr11:125034640..125034655,+!p1@PKNOX2!0.72!4.26!PKNOX2;;chr7:27224795..27224840,-!p2@HOXA11!0.72!4.26!HOXA11;;chr6:45390025..45390076,+!p2@RUNX2!0.71!10.73!RUNX2;;chr11:65686802..65686818,+!p6@DRAP1!0.71!7.67!DRAP1;;chr21:36259445..36259519,-!p4@RUNX1!0.70!12.27!RUNX1;;chr12:124827609..124827643,-!p9@NCOR2!0.69!5.96!NCOR2;;chr15:96869292..96869320,+!p15@NR2F2!0.69!5.96!NR2F2;;chr7:27195867..27195893,-!p3@HOXA7!0.69!3.92!HOXA7;;chr12:69753448..69753577,+!p1@YEATS4!0.68!87.07!YEATS4;;chr19:50529247..50529296,+!p1@ZNF473!0.68!28.11!ZNF473;;chr2:121493425..121493474,+!p1@GLI2!0.68!9.20!GLI2;;chr2:74730430..74730451,-!p1@LBX2!0.68!6.65!LBX2;;chr19:4066890..4066903,-!p6@ZBTB7A!0.68!6.47!ZBTB7A;;chr12:54402729..54402743,+!p3@HOXC8!0.68!3.75!HOXC8;;chr7:27196217..27196246,-!p2@HOXA7!0.68!3.75!HOXA7;;chr19:1592714..1592762,-!p1@MBD3!0.67!32.03!MBD3;;chr7:150946015..150946070,-!p3@SMARCD3!0.67!8.69!SMARCD3;;chr17:46622205..46622218,-!p3@HOXB2!0.66!4.26!HOXB2;;chr1:170632723..170632739,+!p8@PRRX1!0.66!3.58!PRRX1;;chr21:36421347..36421380,-!p8@RUNX1!0.66!3.58!RUNX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.66!3.58!CREB3L1;;chr2:102091566..102091581,-!p1@RFX8!0.66!3.58!RFX8;;chr2:172950227..172950249,+!p2@DLX1!0.66!3.58!DLX1;;chr5:321810..321877,+!p1@AHRR!0.65!12.61!AHRR;;chr7:4815238..4815327,+!p1@KIAA0415!0.64!87.58!AP5Z1;;chr12:122516646..122516668,+!p1@MLXIP!0.64!53.84!MLXIP;;chr13:74708269..74708291,-!p7@KLF12!0.64!4.77!KLF12;;chr12:115122303..115122314,-!p6@TBX3!0.64!3.41!TBX3;;chr3:147127177..147127194,+!p2@ZIC1!0.64!3.41!ZIC1;;chr17:45928443..45928473,-!p2@SP6!0.64!3.41!SP6;;chr1:170632683..170632696,+!p12@PRRX1!0.64!3.41!PRRX1;;chr14:90085458..90085557,-!p1@FOXN3!0.63!40.21!FOXN3;;chr18:53257027..53257052,-!p3@TCF4!0.63!15.16!TCF4;;chr11:706938..707008,-!p3@DEAF1!0.63!4.26!DEAF1;;chr13:74708246..74708264,-!p8@KLF12!0.63!3.75!KLF12;;chr9:16728327..16728338,-!p5@BNC2!0.63!3.24!BNC2;;chr1:170632439..170632465,+!p11@PRRX1!0.63!3.24!PRRX1;;chr16:54320646..54320672,-!p2@IRX3!0.62!5.28!IRX3;;chr3:114343768..114343822,-!p1@ZBTB20!0.61!15.68!ZBTB20;;chr7:150945754..150945789,-!p2@SMARCD3!0.61!10.90!SMARCD3;;chr17:46621937..46621966,-!p2@HOXB2!0.61!9.54!HOXB2;;chr7:27135591..27135658,-!p1@HOXA1!0.61!6.65!HOXA1;;chr6:45390002..45390023,+!p6@RUNX2!0.61!5.79!RUNX2;;chr17:59477197..59477212,+!p2@TBX2!0.61!5.79!TBX2;;chr18:53257001..53257015,-!p5@TCF4!0.61!5.79!TCF4;;chr6:45390077..45390105,+!p9@RUNX2!0.61!4.09!RUNX2;;chr6:10412392..10412409,-!p4@TFAP2A!0.61!3.58!TFAP2A;;chr18:53068911..53068935,-!p4@TCF4!0.61!3.58!TCF4;;chr16:31076332..31076388,-!p3@ZNF668!0.61!3.07!ZNF668;;chr17:46687935..46687950,-!p3@HOXB7!0.61!3.07!HOXB7;;chr17:46806067..46806097,-!p1@HOXB13!0.61!3.07!HOXB13;;chr6:45296191..45296203,+!p13@RUNX2!0.61!3.07!RUNX2;;chr7:27183291..27183324,-!p1@HOXA5!0.61!3.07!HOXA5;;chr2:45236579..45236596,-!p2@SIX2!0.61!3.07!SIX2;;chr2:74726710..74726736,-!p3@LBX2!0.61!3.07!LBX2;;chr17:46622440..46622477,-!p5@HOXB2!0.60!3.41!HOXB2;;chr5:134369905..134369972,-!p1@PITX1!0.59!4.77!PITX1;;chr20:55204351..55204377,+!p1@TFAP2C!0.59!3.92!TFAP2C;;chr7:27213893..27213954,-!p1@HOXA10!0.59!2.90!HOXA10;;chr12:54410948..54410992,+!p3@HOXC5!0.59!2.90!HOXC5;;chr2:102091144..102091183,-!p2@RFX8!0.59!2.90!RFX8;;chr16:86600870..86600921,+!p2@FOXC2!0.59!2.90!FOXC2;;chr14:89029366..89029425,+!p1@ZC3H14!0.58!81.28!ZC3H14;;chr11:65687362..65687436,+!p3@DRAP1!0.58!15.16!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.58!12.78!FOSL1;;chr17:38256799..38256815,-!p3@NR1D1!0.58!5.62!NR1D1;;chr2:28615716..28615733,+!p1@FOSL2!0.57!159.48!FOSL2;;chr12:80084333..80084380,-!p4@PAWR!0.57!15.85!PAWR;;chr9:2158443..2158481,+!p2@SMARCA2!0.57!9.03!SMARCA2;;chr13:74708475..74708499,-!p5@KLF12!0.57!7.16!KLF12;;chr3:114343826..114343869,-!p4@ZBTB20!0.57!6.13!ZBTB20;;chr5:43067636..43067674,+!p6@ZNF131!0.57!3.92!ZNF131;;chr17:46675420..46675465,-!p3@HOXB6!0.57!3.24!HOXB6;;chr3:157824001..157824078,-!p2@SHOX2!0.57!2.73!SHOX2;;chr1:170632115..170632136,+!p9@PRRX1!0.57!2.73!PRRX1;;chr5:142780189..142780223,-!p6@NR3C1!0.57!2.73!NR3C1;;chr7:27169801..27169844,-!p2@HOXA4!0.57!2.73!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!0.57!2.73!HOXA5;;chr1:211433275..211433335,+!p2@RCOR3!0.56!9.54!RCOR3;;chr17:59477275..59477286,+!p3@TBX2!0.56!3.75!TBX2;;chr19:4065848..4065909,-!p4@ZBTB7A!0.55!5.62!ZBTB7A;;chr19:13134457..13134462,+!p5@NFIX!0.55!5.11!NFIX;;chr21:36260343..36260402,-!p6@RUNX1!0.55!4.60!RUNX1;;chr6:45390300..45390335,+!p4@RUNX2!0.55!4.43!RUNX2;;chr3:101546827..101546847,+!p2@NFKBIZ!0.55!3.92!NFKBIZ;;chr3:25470156..25470227,+!p2@RARB!0.55!2.56!RARB;;c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| |expression_enrichment_score=chr12:124873852..124873881,-!p3@NCOR2!1.87!416.09!NCOR2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.84!68.33!HOXC5;;chr2:176969228..176969260,+!p1@HOXD11!1.75!55.55!HOXD11;;chr1:170632285..170632309,+!p1@PRRX1!1.66!50.26!PRRX1;;chr12:124873357..124873401,-!p1@NCOR2!1.64!470.95!NCOR2;;chr6:45296048..45296082,+!p1@RUNX2!1.55!39.02!RUNX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.54!33.57!ZBED1;;chr1:197886461..197886558,+!p1@LHX9!1.51!31.52!LHX9;;chr2:176969179..176969226,+!p2@HOXD11!1.50!30.33!HOXD11;;chr6:134210243..134210257,+!p1@TCF21!1.47!28.45!TCF21;;chr8:25902876..25902936,-!p1@EBF2!1.44!26.58!EBF2;;chr7:27192185..27192209,-!p1@HOXA3!1.33!20.62!HOXA3;;chr15:42749722..42749739,-!p2@ZFP106!1.31!34.76!ZFP106;;chr8:40755333..40755352,-!p1@ZMAT4!1.28!18.23!ZMAT4;;chr17:46682321..46682362,-!p1@HOXB6!1.26!17.04!HOXB6;;chr2:119605214..119605230,-!p1@EN1!1.26!17.04!EN1;;chr10:8096772..8096787,+!p2@GATA3!1.24!19.42!GATA3;;chr11:46299199..46299233,+!p1@CREB3L1!1.23!81.79!CREB3L1;;chr17:46690839..46690884,-!p1@HOXB8!1.23!15.85!HOXB8;;chr4:111558135..111558198,-!p2@PITX2!1.20!14.99!PITX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.19!14.48!HOXC5;;chr21:36421535..36421610,-!p2@RUNX1!1.18!49.58!RUNX1;;chr12:124873824..124873833,-!p19@NCOR2!1.18!13.97!NCOR2;;chr13:74708029..74708077,-!p2@KLF12!1.15!37.66!KLF12;;chr6:10415276..10415341,-!p2@TFAP2A!1.14!15.85!TFAP2A;;chr8:49833978..49833996,-!p1@SNAI2!1.09!231.22!SNAI2;;chr10:8096631..8096660,+!p1@GATA3!1.09!13.63!GATA3;;chr7:27205136..27205164,-!p1@HOXA9!1.09!11.42!HOXA9;;chr1:170632250..170632277,+!p7@PRRX1!1.09!11.42!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!1.08!70.88!SNAI2;;chr7:27224842..27224872,-!p1@HOXA11!1.08!10.90!HOXA11;;chr6:10412600..10412637,-!p1@TFAP2A!1.07!17.89!TFAP2A;;chr12:54402745..54402788,+!p1@HOXC8!1.07!10.73!HOXC8;;chr11:46299539..46299620,+!p2@CREB3L1!1.04!17.04!CREB3L1;;chr16:86600426..86600441,+!p1@FOXC2!1.02!23.51!FOXC2;;chr1:170633348..170633399,+!p2@PRRX1!1.02!13.12!PRRX1;;chr3:147111198..147111225,+!p4@ZIC1!1.00!9.03!ZIC1;;chr12:115122318..115122331,-!p2@TBX3!0.99!8.69!TBX3;;chr7:35293685..35293718,-!p1@TBX20!0.98!8.52!TBX20;;chr2:200322654..200322707,-!p2@SATB2!0.97!12.27!SATB2;;chr3:157823517..157823562,-!p1@SHOX2!0.97!8.86!SHOX2;;chr2:176969097..176969109,+!p3@HOXD11!0.97!8.35!HOXD11;;chr12:54393880..54393962,+!p1@HOXC9!0.97!8.35!HOXC9;;chr8:106330656..106330684,+!p1@ZFPM2!0.95!21.47!ZFPM2;;chr15:57511609..57511651,+!p2@TCF12!0.95!13.46!TCF12;;chr1:170633262..170633285,+!p3@PRRX1!0.95!9.20!PRRX1;;chr2:176969124..176969155,+!p5@HOXD11!0.95!8.01!HOXD11;;chr17:46688334..46688385,-!p1@HOXB7!0.94!11.42!HOXB7;;chr3:71630980..71631110,-!p3@FOXP1!0.93!27.09!FOXP1;;chr10:131762504..131762555,-!p1@EBF3!0.93!7.50!EBF3;;chr17:46691732..46691766,-!p4@HOXB8!0.93!7.50!HOXB8;;chr6:28321971..28321995,-!p1@ZNF323!0.93!7.50!ZNF323;;chr17:46687959..46688007,-!p2@HOXB7!0.92!10.39!HOXB7;;chr15:96869255..96869291,+!p6@NR2F2!0.91!13.29!NR2F2;;chr16:86544113..86544145,+!p1@FOXF1!0.91!8.86!FOXF1;;chr2:176994408..176994492,+!p1@HOXD8!0.91!7.16!HOXD8;;chr2:45236540..45236577,-!p1@SIX2!0.91!7.16!SIX2;;chr7:27153454..27153469,-!p2@HOXA3!0.91!7.16!HOXA3;;chr12:54402790..54402805,+!p2@HOXC8!0.90!6.99!HOXC8;;chr12:115121962..115121987,-!p1@TBX3!0.89!60.15!TBX3;;chr3:147127142..147127168,+!p1@ZIC1!0.89!6.82!ZIC1;;chr5:72744594..72744609,-!p1@FOXD1!0.88!31.69!FOXD1;;chr2:19558373..19558392,-!p1@OSR1!0.88!18.74!OSR1;;chr16:54320617..54320643,-!p3@IRX3!0.87!8.35!IRX3;;chr3:147111231..147111281,+!p3@ZIC1!0.87!6.47!ZIC1;;chr7:19157248..19157268,-!p1@TWIST1!0.86!18.23!TWIST1;;chr17:46622070..46622109,-!p1@HOXB2!0.86!14.48!HOXB2;;chr7:27205106..27205134,-!p2@HOXA9!0.86!6.30!HOXA9;;chr1:170632959..170632987,+!p4@PRRX1!0.85!6.82!PRRX1;;chr2:200323414..200323455,-!p1@SATB2!0.84!13.29!SATB2;;chr19:1592828..1592910,-!p2@MBD3!0.83!48.90!MBD3;;chr2:71127699..71127744,+!p1@VAX2!0.83!12.44!VAX2;;chr17:46622114..46622138,-!p4@HOXB2!0.83!9.03!HOXB2;;chr2:119604456..119604501,-!p2@EN1!0.82!5.62!EN1;;chr12:80085255..80085284,-!p9@PAWR!0.81!8.18!PAWR;;chr10:8095593..8095625,+!p3@GATA3!0.81!6.47!GATA3;;chr7:27142290..27142310,-!p1@HOXA2!0.79!5.11!HOXA2;;chr6:144329384..144329405,-!p1@PLAGL1!0.77!62.02!PLAGL1;;chr19:4066803..4066886,-!p1@ZBTB7A!0.77!57.93!ZBTB7A;;chr8:77593474..77593612,+!p1@ZFHX4!0.77!22.49!ZFHX4;;chr17:59477233..59477263,+!p1@TBX2!0.77!16.53!TBX2;;chr7:27196267..27196311,-!p1@HOXA7!0.77!4.94!HOXA7;;chr7:19157043..19157088,-!p2@TWIST1!0.76!12.95!TWIST1;;chr3:178789522..178789564,-!p2@ZMAT3!0.75!37.66!ZMAT3;;chr5:72744445..72744466,-!p2@FOXD1!0.75!8.18!FOXD1;;chr1:151032860..151032918,+!p1@MLLT11!0.74!59.81!MLLT11;;chr19:4067039..4067064,-!p3@ZBTB7A!0.74!14.31!ZBTB7A;;chr19:31840130..31840160,-!p2@TSHZ3!0.74!7.33!TSHZ3;;chr16:54320158..54320200,-!p5@IRX3!0.74!6.82!IRX3;;chr2:66662281..66662308,+!p1@MEIS1!0.73!16.53!MEIS1;;chr8:67525443..67525459,-!p2@MYBL1!0.73!6.82!MYBL1;;chr9:16870659..16870675,-!p2@BNC2!0.73!5.45!BNC2;;chr5:139492456..139492489,+!p7@PURA!0.73!4.43!PURA;;chr1:119530493..119530572,-!p1@TBX15!0.73!4.43!TBX15;;chr1:170632477..170632506,+!p6@PRRX1!0.73!4.43!PRRX1;;chr2:172949484..172949522,+!p1@DLX1!0.73!4.43!DLX1;;chr19:4065485..4065546,-!p2@ZBTB7A!0.72!42.26!ZBTB7A;;chr11:65686732..65686756,+!p2@DRAP1!0.72!19.94!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!0.72!5.62!DRAP1;;chr13:74707894..74707947,-!p6@KLF12!0.72!4.77!KLF12;;chr11:125034640..125034655,+!p1@PKNOX2!0.72!4.26!PKNOX2;;chr7:27224795..27224840,-!p2@HOXA11!0.72!4.26!HOXA11;;chr6:45390025..45390076,+!p2@RUNX2!0.71!10.73!RUNX2;;chr11:65686802..65686818,+!p6@DRAP1!0.71!7.67!DRAP1;;chr21:36259445..36259519,-!p4@RUNX1!0.70!12.27!RUNX1;;chr12:124827609..124827643,-!p9@NCOR2!0.69!5.96!NCOR2;;chr15:96869292..96869320,+!p15@NR2F2!0.69!5.96!NR2F2;;chr7:27195867..27195893,-!p3@HOXA7!0.69!3.92!HOXA7;;chr12:69753448..69753577,+!p1@YEATS4!0.68!87.07!YEATS4;;chr19:50529247..50529296,+!p1@ZNF473!0.68!28.11!ZNF473;;chr2:121493425..121493474,+!p1@GLI2!0.68!9.20!GLI2;;chr2:74730430..74730451,-!p1@LBX2!0.68!6.65!LBX2;;chr19:4066890..4066903,-!p6@ZBTB7A!0.68!6.47!ZBTB7A;;chr12:54402729..54402743,+!p3@HOXC8!0.68!3.75!HOXC8;;chr7:27196217..27196246,-!p2@HOXA7!0.68!3.75!HOXA7;;chr19:1592714..1592762,-!p1@MBD3!0.67!32.03!MBD3;;chr7:150946015..150946070,-!p3@SMARCD3!0.67!8.69!SMARCD3;;chr17:46622205..46622218,-!p3@HOXB2!0.66!4.26!HOXB2;;chr1:170632723..170632739,+!p8@PRRX1!0.66!3.58!PRRX1;;chr21:36421347..36421380,-!p8@RUNX1!0.66!3.58!RUNX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.66!3.58!CREB3L1;;chr2:102091566..102091581,-!p1@RFX8!0.66!3.58!RFX8;;chr2:172950227..172950249,+!p2@DLX1!0.66!3.58!DLX1;;chr5:321810..321877,+!p1@AHRR!0.65!12.61!AHRR;;chr7:4815238..4815327,+!p1@KIAA0415!0.64!87.58!AP5Z1;;chr12:122516646..122516668,+!p1@MLXIP!0.64!53.84!MLXIP;;chr13:74708269..74708291,-!p7@KLF12!0.64!4.77!KLF12;;chr12:115122303..115122314,-!p6@TBX3!0.64!3.41!TBX3;;chr3:147127177..147127194,+!p2@ZIC1!0.64!3.41!ZIC1;;chr17:45928443..45928473,-!p2@SP6!0.64!3.41!SP6;;chr1:170632683..170632696,+!p12@PRRX1!0.64!3.41!PRRX1;;chr14:90085458..90085557,-!p1@FOXN3!0.63!40.21!FOXN3;;chr18:53257027..53257052,-!p3@TCF4!0.63!15.16!TCF4;;chr11:706938..707008,-!p3@DEAF1!0.63!4.26!DEAF1;;chr13:74708246..74708264,-!p8@KLF12!0.63!3.75!KLF12;;chr9:16728327..16728338,-!p5@BNC2!0.63!3.24!BNC2;;chr1:170632439..170632465,+!p11@PRRX1!0.63!3.24!PRRX1;;chr16:54320646..54320672,-!p2@IRX3!0.62!5.28!IRX3;;chr3:114343768..114343822,-!p1@ZBTB20!0.61!15.68!ZBTB20;;chr7:150945754..150945789,-!p2@SMARCD3!0.61!10.90!SMARCD3;;chr17:46621937..46621966,-!p2@HOXB2!0.61!9.54!HOXB2;;chr7:27135591..27135658,-!p1@HOXA1!0.61!6.65!HOXA1;;chr6:45390002..45390023,+!p6@RUNX2!0.61!5.79!RUNX2;;chr17:59477197..59477212,+!p2@TBX2!0.61!5.79!TBX2;;chr18:53257001..53257015,-!p5@TCF4!0.61!5.79!TCF4;;chr6:45390077..45390105,+!p9@RUNX2!0.61!4.09!RUNX2;;chr6:10412392..10412409,-!p4@TFAP2A!0.61!3.58!TFAP2A;;chr18:53068911..53068935,-!p4@TCF4!0.61!3.58!TCF4;;chr16:31076332..31076388,-!p3@ZNF668!0.61!3.07!ZNF668;;chr17:46687935..46687950,-!p3@HOXB7!0.61!3.07!HOXB7;;chr17:46806067..46806097,-!p1@HOXB13!0.61!3.07!HOXB13;;chr6:45296191..45296203,+!p13@RUNX2!0.61!3.07!RUNX2;;chr7:27183291..27183324,-!p1@HOXA5!0.61!3.07!HOXA5;;chr2:45236579..45236596,-!p2@SIX2!0.61!3.07!SIX2;;chr2:74726710..74726736,-!p3@LBX2!0.61!3.07!LBX2;;chr17:46622440..46622477,-!p5@HOXB2!0.60!3.41!HOXB2;;chr5:134369905..134369972,-!p1@PITX1!0.59!4.77!PITX1;;chr20:55204351..55204377,+!p1@TFAP2C!0.59!3.92!TFAP2C;;chr7:27213893..27213954,-!p1@HOXA10!0.59!2.90!HOXA10;;chr12:54410948..54410992,+!p3@HOXC5!0.59!2.90!HOXC5;;chr2:102091144..102091183,-!p2@RFX8!0.59!2.90!RFX8;;chr16:86600870..86600921,+!p2@FOXC2!0.59!2.90!FOXC2;;chr14:89029366..89029425,+!p1@ZC3H14!0.58!81.28!ZC3H14;;chr11:65687362..65687436,+!p3@DRAP1!0.58!15.16!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.58!12.78!FOSL1;;chr17:38256799..38256815,-!p3@NR1D1!0.58!5.62!NR1D1;;chr2:28615716..28615733,+!p1@FOSL2!0.57!159.48!FOSL2;;chr12:80084333..80084380,-!p4@PAWR!0.57!15.85!PAWR;;chr9:2158443..2158481,+!p2@SMARCA2!0.57!9.03!SMARCA2;;chr13:74708475..74708499,-!p5@KLF12!0.57!7.16!KLF12;;chr3:114343826..114343869,-!p4@ZBTB20!0.57!6.13!ZBTB20;;chr5:43067636..43067674,+!p6@ZNF131!0.57!3.92!ZNF131;;chr17:46675420..46675465,-!p3@HOXB6!0.57!3.24!HOXB6;;chr3:157824001..157824078,-!p2@SHOX2!0.57!2.73!SHOX2;;chr1:170632115..170632136,+!p9@PRRX1!0.57!2.73!PRRX1;;chr5:142780189..142780223,-!p6@NR3C1!0.57!2.73!NR3C1;;chr7:27169801..27169844,-!p2@HOXA4!0.57!2.73!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!0.57!2.73!HOXA5;;chr1:211433275..211433335,+!p2@RCOR3!0.56!9.54!RCOR3;;chr17:59477275..59477286,+!p3@TBX2!0.56!3.75!TBX2;;chr19:4065848..4065909,-!p4@ZBTB7A!0.55!5.62!ZBTB7A;;chr19:13134457..13134462,+!p5@NFIX!0.55!5.11!NFIX;;chr21:36260343..36260402,-!p6@RUNX1!0.55!4.60!RUNX1;;chr6:45390300..45390335,+!p4@RUNX2!0.55!4.43!RUNX2;;chr3:101546827..101546847,+!p2@NFKBIZ!0.55!3.92!NFKBIZ;;chr3:25470156..25470227,+!p2@RARB!0.55!2.56!RARB;;c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NF189;;chr19:21579908..21579949,+!p1@ZNF493!0.19!7.84!ZNF493;;chr19:23869970..23869991,-!p1@ZNF675!0.19!4.60!ZNF675;;chr19:36870087..36870110,-!p1@ZFP14!0.19!4.43!ZFP14;;chr17:38256877..38256900,-!p2@NR1D1!0.19!3.75!NR1D1;;chr19:11877838..11877915,+!p1@ZNF441!0.19!3.58!ZNF441;;chr10:35484053..35484076,+!p1@CREM!0.19!2.73!CREM;;chr16:8962544..8962584,-!p2@CARHSP1!0.19!2.39!CARHSP1;;chr14:89628064..89628109,-!p4@FOXN3!0.19!2.04!FOXN3;;chr2:214015111..214015179,-!p1@IKZF2!0.19!1.70!IKZF2;;chr16:30418894..30418909,+!p2@ZNF771!0.19!1.53!ZNF771;;chr6:28367481..28367506,-!p2@ZSCAN12!0.19!1.36!ZSCAN12;;chr7:64023410..64023428,-!p2@ZNF680!0.19!1.36!ZNF680;;chr5:178322893..178322931,+!p1@ZFP2!0.19!1.19!ZFP2;;chr15:96875041..96875052,+!p17@NR2F2!0.19!1.19!NR2F2;;chr17:79881332..79881348,-!p3@MAFG!0.19!1.19!MAFG;;chr16:4365715..4365746,+!p@chr16:4365715..4365746,+!0.19!1.02!GLIS2;;chr2:66662232..66662243,+!p5@MEIS1!0.19!1.02!MEIS1;;chr3:71632811..71632825,-!p19@FOXP1!0.19!1.02!FOXP1;;chr4:106156933..106156947,+!p3@TET2!0.19!1.02!TET2;;chrX:66763815..66763854,+!p2@AR!0.19!1.02!AR;;chr5:92920256..92920282,+!p7@NR2F1!0.19!0.85!NR2F1;;chr22:42666429..42666436,-!p@chr22:42666429..42666436,-!0.19!0.68!TCF20;;chr1:59249707..59249727,-!p1@JUN!0.18!57.25!JUN;;chr19:44123734..44123796,-!p1@ZNF428!0.18!50.61!ZNF428;;chr16:69599861..69599885,+!p1@NFAT5!0.18!21.64!NFAT5;;chr2:70314579..70314590,+!p2@PCBP1!0.18!20.79!PCBP1;;chr10:77161504..77161530,-!p1@ZNF503!0.18!17.72!ZNF503;;chr12:95467359..95467417,-!p2@NR2C1!0.18!17.38!NR2C1;;chr1:197170394..197170444,-!p@chr1:197170394..197170444,-!0.18!14.14!ZBTB41;;chr7:77428149..77428220,+!p1@PHTF2!0.18!13.29!PHTF2;;chr17:4890919..4890985,-!p1@CAMTA2!0.18!12.10!CAMTA2;;chrX:152599604..152599626,+!p1@ZNF275!0.18!9.71!ZNF275;;chr9:35732647..35732678,+!p2@CREB3!0.18!6.82!CREB3;;chr19:37407212..37407280,+!p1@ZNF568!0.18!4.77!ZNF568;;chr19:53696587..53696633,-!p1@ZNF665!0.18!4.26!ZNF665;;chr6:12011943..12012015,+!p2@HIVEP1!0.18!3.58!HIVEP1;;chr2:148778973..148779035,+!p3@MBD5!0.18!2.73!MBD5;;chr19:36705547..36705597,-!p1@ZNF565!0.18!2.73!ZNF565;;chr14:69262789..69262822,-!p2@ZFP36L1!0.18!2.73!ZFP36L1;;chr20:3388207..3388236,-!p4@C20orf194!0.18!2.56!C20orf194;;chrX:129244885..129244926,-!p3@ELF4!0.18!2.56!ELF4;;chr1:211433151..211433191,+!p5@RCOR3!0.18!2.04!RCOR3;;chr5:178157700..178157734,-!p3@ZNF354A!0.18!2.04!ZNF354A;;chr8:116681150..116681164,-!p5@TRPS1!0.18!1.87!TRPS1;;chr19:36909484..36909525,-!p2@ZFP82!0.18!1.87!ZFP82;;chr22:46546494..46546525,+!p2@PPARA!0.18!1.87!PPARA;;chr10:3824332..3824425,-!p4@KLF6!0.18!1.36!KLF6;;chr14:64970593..64970627,+!p5@ZBTB1!0.18!1.19!ZBTB1;;chr1:247171316..247171336,-!p3@ZNF695!0.18!1.19!ZNF695;;chr18:3448422..3448439,+!p11@TGIF1!0.18!1.19!TGIF1;;chr6:28234822..28234836,+!p1@ZNF187!0.18!1.19!ZNF187;;chrX:129402754..129402766,-!p3@ZNF280C!0.18!1.02!ZNF280C;;chr16:73093174..73093209,-!p3@ZFHX3!0.18!1.02!ZFHX3;;chr20:44600199..44600219,-!p3@ZNF335!0.18!1.02!ZNF335;;chr1:23696448..23696453,-!p5@ZNF436!0.18!0.85!ZNF436;;chr8:124286761..124286773,-!p4@ZHX1!0.18!0.85!ZHX1;;chr3:170075080..170075089,+!p7@SKIL!0.18!0.85!SKIL;;chr18:42260030..42260055,+!p3@SETBP1!0.18!0.85!SETBP1;;chr9:2016758..2016782,+!p11@SMARCA2!0.18!0.85!SMARCA2;;chr6:21594252..21594285,+!p11@SOX4!0.18!0.68!SOX4;;chr12:51611888..51611917,-!p3@POU6F1!0.18!0.68!POU6F1;;chr18:3452133..3452150,+!p19@TGIF1!0.18!0.68!TGIF1;;chr2:24930357..24930402,+!p3@NCOA1!0.18!0.68!NCOA1;;chr2:25565329..25565342,-!p6@DNMT3A!0.18!0.68!DNMT3A;;chr22:22874610..22874616,-!p1@ZNF280A!0.18!0.51!ZNF280A;;chr22:46546390..46546401,+!p3@PPARA!0.18!0.51!PPARA;;chr2:100721310..100721325,-!p7@AFF3!0.18!0.51!AFF3;;chr2:113977697..113977733,-!p6@PAX8!0.18!0.51!PAX8;;chr2:177001366..177001379,+!p4@HOXD3!0.18!0.51!HOXD3;; | ||
Line 36: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aKMLS-1.CNhs11870.10782-110G8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aKMLS-1.CNhs11870.10782-110G8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aKMLS-1.CNhs11870.10782-110G8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aKMLS-1.CNhs11870.10782-110G8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/liposarcoma%2520cell%2520line%253aKMLS-1.CNhs11870.10782-110G8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10782-110G8 | |id=FF:10782-110G8 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0103744 | |is_a=EFO:0002091;;FF:0000210;;FF:0103744 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11870 | |||
|library_id_phase_based=2:CNhs11870 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10782 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10782 | |||
|name=liposarcoma cell line:KMLS-1 | |name=liposarcoma cell line:KMLS-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 44: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11870,LSID830,release010,COMPLETED | |profile_hcage=CNhs11870,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0341649341991287,0,0.275469904121696,0,0,0.0653922943194612,0,0.167099661296879,0.379531407883949,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187659405468457,0,0,0.0341649341991287,0,0,0.529138738656737,0,0,0.172895033185389,0,0,0,0,0,0,0,0,0,0,0,0,0.183514936776891,0.177488249166793,0,0,0,0,0,0,0,0.0099499130862943,0,0,0,0,0,0.0525339582906389,0,0.386545907091482,0,0,0.030012614349106,0,0,0,0,0,0,0,0,0.127356241562203,0,0,0,0,0.0683298683982573,0,0,0,0.0876541155737092,0.0636781207811015,0,0.0931706279653312,0,0,0,0.292227334075901,0.152925811482126,0,0,-0.205679546965597,-0.113354347715639,0.0341649341991287,0.225710324405847,0.0636781207811015,0,0.0812762665168361,0.271135998364708,0,0,0.000153570923712106,0.0683298683982573,0,0,0,0,0,0,0.0978430549802301,0,0,0,0,0,0,0.074117613985981,0,0,0,0.101415854876647,0.270426421906507,0,0,0.127356241562203,0,0,0 | |||
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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 59: | Line 77: | ||
|rna_weight_ug=32.77017 | |rna_weight_ug=32.77017 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb0200 | |sample_cell_catalog=jcrb0200 | ||
|sample_cell_line=KMLS-1 | |sample_cell_line=KMLS-1 | ||
Line 80: | Line 99: | ||
|top_motifs=EVI1:2.17165339971;NKX3-1:2.01210709223;HMGA1,2:1.97304796213;ALX4:1.56333786549;TAL1_TCF{3,4,12}:1.55215555339;HIF1A:1.42365290997;ZNF384:1.40122415953;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.37633085799;AIRE:1.34320052414;POU3F1..4:1.28745970509;RXR{A,B,G}:1.2327353161;HOX{A5,B5}:1.21453872189;NR3C1:1.15931973226;ATF6:1.11080649263;NANOG{mouse}:1.01402961755;TBX4,5:0.991847401845;DBP:0.990926045168;RXRA_VDR{dimer}:0.974226508142;PAX4:0.967759201339;TOPORS:0.952757513539;UFEwm:0.952458006037;HSF1,2:0.94604190202;TEAD1:0.891687769119;PDX1:0.841771297911;PAX8:0.839265887598;FOXD3:0.813436815621;IKZF1:0.786520075549;HOX{A4,D4}:0.77301387783;ADNP_IRX_SIX_ZHX:0.768884513646;PITX1..3:0.755628924905;PRDM1:0.737859395628;NR1H4:0.73324314806;EN1,2:0.716961467802;TFAP2{A,C}:0.710008899324;GZF1:0.703420863173;HBP1_HMGB_SSRP1_UBTF:0.700238551302;AHR_ARNT_ARNT2:0.692403371697;GFI1B:0.670152028124;XBP1:0.668284007832;TP53:0.63088813036;PRRX1,2:0.622111095436;ZBTB16:0.615176963674;SOX17:0.600793717104;GTF2A1,2:0.59182392876;HES1:0.586245111218;TFAP2B:0.5708977323;NKX2-2,8:0.569514624064;ARID5B:0.511153153155;MZF1:0.478391451771;TFAP4:0.470180091398;NKX6-1,2:0.466261488957;NFE2L1:0.44635012767;ZNF143:0.426169512184;YY1:0.423301227993;CDC5L:0.411594848961;MTE{core}:0.408076373897;HIC1:0.406215013948;GTF2I:0.404987214104;ZBTB6:0.384394470409;BACH2:0.359601314421;NRF1:0.356381115376;MAZ:0.349779466171;ELK1,4_GABP{A,B1}:0.345173284899;KLF4:0.331275003966;FOXM1:0.325060284397;TLX1..3_NFIC{dimer}:0.318164401083;TFCP2:0.309515936348;PPARG:0.309410132781;NR6A1:0.309295403538;NFATC1..3:0.275650821952;FOXA2:0.27409997908;EBF1:0.269232054195;NKX3-2:0.248540579123;FOXN1:0.243195980433;SPZ1:0.237769925277;SRF:0.236152935519;GFI1:0.221834885862;GLI1..3:0.206907512878;ESR1:0.204232149768;NFE2L2:0.194424472147;SREBF1,2:0.17741283578;TEF:0.166423957094;CDX1,2,4:0.163919649345;MYBL2:0.162954839398;POU6F1:0.160485287489;SMAD1..7,9:0.150266348892;ZNF238:0.142929904997;LEF1_TCF7_TCF7L1,2:0.135433562823;MED-1{core}:0.129781771021;LHX3,4:0.117106059611;FOXL1:0.106462424559;FOSL2:0.102955513109;MYFfamily:0.101983679307;STAT5{A,B}:0.0995118019813;STAT1,3:0.0990687251443;NFE2:0.094864465918;PAX2:0.0874958389586;ZIC1..3:0.0665463406292;CREB1:0.0570730334843;FOXP1:0.0561058023716;ONECUT1,2:0.0463906976993;MAFB:0.0430431729126;GATA4:0.0296019556192;HMX1:0.0264399622254;PBX1:-0.00364995456864;FOS_FOS{B,L1}_JUN{B,D}:-0.0123408895321;IRF1,2:-0.0161523354514;PAX6:-0.0184712956428;REST:-0.0609559262854;NKX2-3_NKX2-5:-0.0861280544892;ZFP161:-0.0990588989026;HNF1A:-0.106058827751;RUNX1..3:-0.115596450386;NKX2-1,4:-0.127222519753;STAT2,4,6:-0.141889475185;PAX1,9:-0.153989924422;BREu{core}:-0.160489913786;HLF:-0.161539565331;SOX2:-0.169333877152;NHLH1,2:-0.177804092441;TFDP1:-0.180522738656;GCM1,2:-0.182435183759;E2F1..5:-0.187348382202;POU1F1:-0.20748458227;bHLH_family:-0.208265329847;IKZF2:-0.210967164503;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.229795343058;MYB:-0.247807330669;EGR1..3:-0.259363450329;SP1:-0.319558755317;ZNF148:-0.333937175166;OCT4_SOX2{dimer}:-0.339976011498;PATZ1:-0.351519179017;HNF4A_NR2F1,2:-0.35644285777;ELF1,2,4:-0.362134305906;ATF5_CREB3:-0.364548629838;NFY{A,B,C}:-0.370429293417;XCPE1{core}:-0.370868441662;MEF2{A,B,C,D}:-0.384528052805;NFKB1_REL_RELA:-0.408277469932;SOX{8,9,10}:-0.412389274392;MTF1:-0.422906911623;RREB1:-0.430572825295;SPI1:-0.44421422114;DMAP1_NCOR{1,2}_SMARC:-0.456769999035;PAX3,7:-0.480310846781;RFX1:-0.484419695699;ATF2:-0.498803422222;JUN:-0.499255705199;SPIB:-0.504222143472;ALX1:-0.515621313806;CRX:-0.522882923762;AR:-0.52362256466;TGIF1:-0.533198674107;IRF7:-0.539686569081;TLX2:-0.544476050606;FOXQ1:-0.610746990962;ETS1,2:-0.642580769868;T:-0.65058535752;NFIX:-0.679108273563;CUX2:-0.679175625985;LMO2:-0.728168598592;ESRRA:-0.731230477054;FOXO1,3,4:-0.732304986969;NANOG:-0.753777433492;GATA6:-0.766638017613;RORA:-0.767128120899;HOXA9_MEIS1:-0.772483185669;FOX{D1,D2}:-0.777754691209;HAND1,2:-0.794002213744;TBP:-0.824122389293;EP300:-0.828074750096;ATF4:-0.828318105737;FOX{I1,J2}:-0.841094281639;RBPJ:-0.852860537556;PAX5:-0.887061338005;POU5F1:-0.893597239271;POU2F1..3:-0.912861360235;CEBPA,B_DDIT3:-0.933651588455;FOXP3:-1.0229307021;RFX2..5_RFXANK_RFXAP:-1.03532078937;VSX1,2:-1.05420736869;BPTF:-1.06467511486;FOX{F1,F2,J1}:-1.08454718096;NFIL3:-1.11167778787;NR5A1,2:-1.18081341891;HOX{A6,A7,B6,B7}:-1.18157381954;SNAI1..3:-1.24015095309;ZNF423:-1.27803228021;ZEB1:-1.29413735456;MYOD1:-1.3127963092;SOX5:-1.51575578575 | |top_motifs=EVI1:2.17165339971;NKX3-1:2.01210709223;HMGA1,2:1.97304796213;ALX4:1.56333786549;TAL1_TCF{3,4,12}:1.55215555339;HIF1A:1.42365290997;ZNF384:1.40122415953;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.37633085799;AIRE:1.34320052414;POU3F1..4:1.28745970509;RXR{A,B,G}:1.2327353161;HOX{A5,B5}:1.21453872189;NR3C1:1.15931973226;ATF6:1.11080649263;NANOG{mouse}:1.01402961755;TBX4,5:0.991847401845;DBP:0.990926045168;RXRA_VDR{dimer}:0.974226508142;PAX4:0.967759201339;TOPORS:0.952757513539;UFEwm:0.952458006037;HSF1,2:0.94604190202;TEAD1:0.891687769119;PDX1:0.841771297911;PAX8:0.839265887598;FOXD3:0.813436815621;IKZF1:0.786520075549;HOX{A4,D4}:0.77301387783;ADNP_IRX_SIX_ZHX:0.768884513646;PITX1..3:0.755628924905;PRDM1:0.737859395628;NR1H4:0.73324314806;EN1,2:0.716961467802;TFAP2{A,C}:0.710008899324;GZF1:0.703420863173;HBP1_HMGB_SSRP1_UBTF:0.700238551302;AHR_ARNT_ARNT2:0.692403371697;GFI1B:0.670152028124;XBP1:0.668284007832;TP53:0.63088813036;PRRX1,2:0.622111095436;ZBTB16:0.615176963674;SOX17:0.600793717104;GTF2A1,2:0.59182392876;HES1:0.586245111218;TFAP2B:0.5708977323;NKX2-2,8:0.569514624064;ARID5B:0.511153153155;MZF1:0.478391451771;TFAP4:0.470180091398;NKX6-1,2:0.466261488957;NFE2L1:0.44635012767;ZNF143:0.426169512184;YY1:0.423301227993;CDC5L:0.411594848961;MTE{core}:0.408076373897;HIC1:0.406215013948;GTF2I:0.404987214104;ZBTB6:0.384394470409;BACH2:0.359601314421;NRF1:0.356381115376;MAZ:0.349779466171;ELK1,4_GABP{A,B1}:0.345173284899;KLF4:0.331275003966;FOXM1:0.325060284397;TLX1..3_NFIC{dimer}:0.318164401083;TFCP2:0.309515936348;PPARG:0.309410132781;NR6A1:0.309295403538;NFATC1..3:0.275650821952;FOXA2:0.27409997908;EBF1:0.269232054195;NKX3-2:0.248540579123;FOXN1:0.243195980433;SPZ1:0.237769925277;SRF:0.236152935519;GFI1:0.221834885862;GLI1..3:0.206907512878;ESR1:0.204232149768;NFE2L2:0.194424472147;SREBF1,2:0.17741283578;TEF:0.166423957094;CDX1,2,4:0.163919649345;MYBL2:0.162954839398;POU6F1:0.160485287489;SMAD1..7,9:0.150266348892;ZNF238:0.142929904997;LEF1_TCF7_TCF7L1,2:0.135433562823;MED-1{core}:0.129781771021;LHX3,4:0.117106059611;FOXL1:0.106462424559;FOSL2:0.102955513109;MYFfamily:0.101983679307;STAT5{A,B}:0.0995118019813;STAT1,3:0.0990687251443;NFE2:0.094864465918;PAX2:0.0874958389586;ZIC1..3:0.0665463406292;CREB1:0.0570730334843;FOXP1:0.0561058023716;ONECUT1,2:0.0463906976993;MAFB:0.0430431729126;GATA4:0.0296019556192;HMX1:0.0264399622254;PBX1:-0.00364995456864;FOS_FOS{B,L1}_JUN{B,D}:-0.0123408895321;IRF1,2:-0.0161523354514;PAX6:-0.0184712956428;REST:-0.0609559262854;NKX2-3_NKX2-5:-0.0861280544892;ZFP161:-0.0990588989026;HNF1A:-0.106058827751;RUNX1..3:-0.115596450386;NKX2-1,4:-0.127222519753;STAT2,4,6:-0.141889475185;PAX1,9:-0.153989924422;BREu{core}:-0.160489913786;HLF:-0.161539565331;SOX2:-0.169333877152;NHLH1,2:-0.177804092441;TFDP1:-0.180522738656;GCM1,2:-0.182435183759;E2F1..5:-0.187348382202;POU1F1:-0.20748458227;bHLH_family:-0.208265329847;IKZF2:-0.210967164503;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.229795343058;MYB:-0.247807330669;EGR1..3:-0.259363450329;SP1:-0.319558755317;ZNF148:-0.333937175166;OCT4_SOX2{dimer}:-0.339976011498;PATZ1:-0.351519179017;HNF4A_NR2F1,2:-0.35644285777;ELF1,2,4:-0.362134305906;ATF5_CREB3:-0.364548629838;NFY{A,B,C}:-0.370429293417;XCPE1{core}:-0.370868441662;MEF2{A,B,C,D}:-0.384528052805;NFKB1_REL_RELA:-0.408277469932;SOX{8,9,10}:-0.412389274392;MTF1:-0.422906911623;RREB1:-0.430572825295;SPI1:-0.44421422114;DMAP1_NCOR{1,2}_SMARC:-0.456769999035;PAX3,7:-0.480310846781;RFX1:-0.484419695699;ATF2:-0.498803422222;JUN:-0.499255705199;SPIB:-0.504222143472;ALX1:-0.515621313806;CRX:-0.522882923762;AR:-0.52362256466;TGIF1:-0.533198674107;IRF7:-0.539686569081;TLX2:-0.544476050606;FOXQ1:-0.610746990962;ETS1,2:-0.642580769868;T:-0.65058535752;NFIX:-0.679108273563;CUX2:-0.679175625985;LMO2:-0.728168598592;ESRRA:-0.731230477054;FOXO1,3,4:-0.732304986969;NANOG:-0.753777433492;GATA6:-0.766638017613;RORA:-0.767128120899;HOXA9_MEIS1:-0.772483185669;FOX{D1,D2}:-0.777754691209;HAND1,2:-0.794002213744;TBP:-0.824122389293;EP300:-0.828074750096;ATF4:-0.828318105737;FOX{I1,J2}:-0.841094281639;RBPJ:-0.852860537556;PAX5:-0.887061338005;POU5F1:-0.893597239271;POU2F1..3:-0.912861360235;CEBPA,B_DDIT3:-0.933651588455;FOXP3:-1.0229307021;RFX2..5_RFXANK_RFXAP:-1.03532078937;VSX1,2:-1.05420736869;BPTF:-1.06467511486;FOX{F1,F2,J1}:-1.08454718096;NFIL3:-1.11167778787;NR5A1,2:-1.18081341891;HOX{A6,A7,B6,B7}:-1.18157381954;SNAI1..3:-1.24015095309;ZNF423:-1.27803228021;ZEB1:-1.29413735456;MYOD1:-1.3127963092;SOX5:-1.51575578575 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10782-110G8;search_select_hide=table117:FF:10782-110G8 | |||
}} | }} |
Latest revision as of 15:04, 3 June 2020
Name: | liposarcoma cell line:KMLS-1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11870 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11870
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11870
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.602 |
10 | 10 | 0.641 |
100 | 100 | 0.454 |
101 | 101 | 0.786 |
102 | 102 | 0.695 |
103 | 103 | 0.895 |
104 | 104 | 0.442 |
105 | 105 | 0.29 |
106 | 106 | 0.0809 |
107 | 107 | 0.282 |
108 | 108 | 0.115 |
109 | 109 | 0.295 |
11 | 11 | 0.36 |
110 | 110 | 0.361 |
111 | 111 | 0.781 |
112 | 112 | 0.836 |
113 | 113 | 0.026 |
114 | 114 | 0.448 |
115 | 115 | 0.852 |
116 | 116 | 0.279 |
117 | 117 | 0.541 |
118 | 118 | 0.629 |
119 | 119 | 0.897 |
12 | 12 | 0.519 |
120 | 120 | 0.968 |
121 | 121 | 0.992 |
122 | 122 | 0.0269 |
123 | 123 | 0.881 |
124 | 124 | 0.903 |
125 | 125 | 0.767 |
126 | 126 | 0.0452 |
127 | 127 | 0.745 |
128 | 128 | 0.239 |
129 | 129 | 0.467 |
13 | 13 | 0.15 |
130 | 130 | 0.541 |
131 | 131 | 0.501 |
132 | 132 | 0.327 |
133 | 133 | 0.62 |
134 | 134 | 0.863 |
135 | 135 | 0.241 |
136 | 136 | 0.742 |
137 | 137 | 0.636 |
138 | 138 | 0.906 |
139 | 139 | 0.969 |
14 | 14 | 0.244 |
140 | 140 | 0.78 |
141 | 141 | 0.103 |
142 | 142 | 0.951 |
143 | 143 | 0.528 |
144 | 144 | 0.265 |
145 | 145 | 0.431 |
146 | 146 | 0.0866 |
147 | 147 | 0.229 |
148 | 148 | 0.793 |
149 | 149 | 0.922 |
15 | 15 | 0.0884 |
150 | 150 | 0.182 |
151 | 151 | 0.2 |
152 | 152 | 0.897 |
153 | 153 | 0.792 |
154 | 154 | 0.261 |
155 | 155 | 0.172 |
156 | 156 | 0.54 |
157 | 157 | 0.774 |
158 | 158 | 0.0152 |
159 | 159 | 0.158 |
16 | 16 | 0.369 |
160 | 160 | 0.103 |
161 | 161 | 0.013 |
162 | 162 | 0.269 |
163 | 163 | 0.297 |
164 | 164 | 0.645 |
165 | 165 | 0.619 |
166 | 166 | 0.147 |
167 | 167 | 0.488 |
168 | 168 | 0.157 |
169 | 169 | 0.319 |
17 | 17 | 0.893 |
18 | 18 | 0.444 |
19 | 19 | 0.527 |
2 | 2 | 0.871 |
20 | 20 | 0.756 |
21 | 21 | 0.256 |
22 | 22 | 0.701 |
23 | 23 | 0.119 |
24 | 24 | 0.58 |
25 | 25 | 0.0806 |
26 | 26 | 0.91 |
27 | 27 | 0.467 |
28 | 28 | 0.469 |
29 | 29 | 0.473 |
3 | 3 | 0.569 |
30 | 30 | 0.494 |
31 | 31 | 0.743 |
32 | 32 | 7.64878e-6 |
33 | 33 | 0.475 |
34 | 34 | 0.356 |
35 | 35 | 0.781 |
36 | 36 | 0.102 |
37 | 37 | 0.864 |
38 | 38 | 0.194 |
39 | 39 | 0.553 |
4 | 4 | 0.948 |
40 | 40 | 0.00726 |
41 | 41 | 0.209 |
42 | 42 | 0.445 |
43 | 43 | 0.455 |
44 | 44 | 0.807 |
45 | 45 | 0.21 |
46 | 46 | 0.861 |
47 | 47 | 0.583 |
48 | 48 | 0.582 |
49 | 49 | 0.252 |
5 | 5 | 0.608 |
50 | 50 | 0.824 |
51 | 51 | 0.529 |
52 | 52 | 0.202 |
53 | 53 | 0.729 |
54 | 54 | 0.559 |
55 | 55 | 0.0335 |
56 | 56 | 0.888 |
57 | 57 | 0.783 |
58 | 58 | 0.259 |
59 | 59 | 0.221 |
6 | 6 | 0.668 |
60 | 60 | 0.0608 |
61 | 61 | 0.699 |
62 | 62 | 0.295 |
63 | 63 | 0.413 |
64 | 64 | 0.354 |
65 | 65 | 0.248 |
66 | 66 | 0.51 |
67 | 67 | 0.914 |
68 | 68 | 0.629 |
69 | 69 | 0.711 |
7 | 7 | 0.0229 |
70 | 70 | 0.158 |
71 | 71 | 0.818 |
72 | 72 | 0.281 |
73 | 73 | 0.889 |
74 | 74 | 0.323 |
75 | 75 | 0.762 |
76 | 76 | 0.95 |
77 | 77 | 0.914 |
78 | 78 | 0.551 |
79 | 79 | 0.261 |
8 | 8 | 0.913 |
80 | 80 | 0.25 |
81 | 81 | 0.947 |
82 | 82 | 0.601 |
83 | 83 | 0.513 |
84 | 84 | 0.784 |
85 | 85 | 0.373 |
86 | 86 | 0.666 |
87 | 87 | 0.636 |
88 | 88 | 0.649 |
89 | 89 | 0.616 |
9 | 9 | 0.33 |
90 | 90 | 0.273 |
91 | 91 | 0.169 |
92 | 92 | 0.999 |
93 | 93 | 0.776 |
94 | 94 | 0.813 |
95 | 95 | 0.88 |
96 | 96 | 0.749 |
97 | 97 | 0.605 |
98 | 98 | 0.00588 |
99 | 99 | 0.312 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11870
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103744 liposarcoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)
0103744 (liposarcoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA