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{{f5samples
{{f5samples
|id=FF:10785-110H2
|DRA_sample_Accession=CAGE@SAMD00005669
|name=choriocarcinoma cell line:SCH
|accession_numbers=CAGE;DRX007850;DRR008722;DRZ000147;DRZ001532;DRZ011497;DRZ012882
|sample_id=10785
|rna_tube_id=110H2
|rna_box=110
|rna_position=H2
|sample_cell_lot=
|sample_cell_catalog=jcrb0251
|sample_company=JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=stomach
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=46
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=2.01
|rna_od260/280=2.04
|sample_cell_type=trophoblast cell
|sample_cell_line=SCH
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=choriocarcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=64.00695
|rna_concentration=1.36185
|sample_note=
|profile_hcage=CNhs11875,LSID830,release010,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000039,CL:0000144,CL:0000255,CL:0000548,CL:0000586
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:2994,DOID:3095,DOID:4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000255,CL:0000039,CL:0000586
|sample_description=
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:2994
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101575
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.57!367.34!PEG3;;chr10:8096631..8096660,+!p1@GATA3!2.31!242.50!GATA3;;chr20:55204351..55204377,+!p1@TFAP2C!2.27!233.05!TFAP2C;;chrX:70319128..70319142,+!p3@FOXO4!2.15!141.24!FOXO4;;chr17:45928521..45928539,-!p1@SP6!2.07!115.93!SP6;;chr1:201979743..201979762,+!p1@ELF3!2.00!99.41!ELF3;;chrX:131547625..131547644,-!p4@MBNL3!1.89!76.49!MBNL3;;chr10:8096772..8096787,+!p2@GATA3!1.87!86.37!GATA3;;chr6:10419884..10419898,-!p11@TFAP2A!1.82!65.51!TFAP2A;;chr17:7493405..7493419,-!p1@SOX15!1.79!60.30!SOX15;;chr5:2751762..2751784,-!p1@IRX2!1.77!57.26!IRX2;;chr17:48072574..48072597,-!p1@DLX3!1.71!50.41!DLX3;;chr19:33793430..33793447,-!p1@CEBPA!1.67!183.18!CEBPA;;chr10:8095593..8095625,+!p3@GATA3!1.66!52.48!GATA3;;chr5:174151553..174151610,+!p1@MSX2!1.64!69.32!MSX2;;chr2:10091815..10091864,+!p1@GRHL1!1.63!54.98!GRHL1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.63!42.05!TFCP2L1;;chr18:19749386..19749404,+!p2@GATA6!1.62!57.91!GATA6;;chr12:19556998..19557013,+!p6@AEBP2!1.61!40.09!AEBP2;;chr4:188916918..188916942,+!p1@ZFP42!1.59!37.48!ZFP42;;chr20:31350184..31350200,+!p1@DNMT3B!1.56!72.58!DNMT3B;;chr3:12330560..12330579,+!p1@PPARG!1.56!39.98!PPARG;;chr12:54785054..54785072,-!p4@ZNF385A!1.55!38.90!ZNF385A;;chr9:127358120..127358170,-!p3@NR6A1!1.55!34.88!NR6A1;;chr5:174151612..174151633,+!p2@MSX2!1.55!34.77!MSX2;;chr1:201979703..201979721,+!p2@ELF3!1.51!31.29!ELF3;;chr15:96869511..96869525,+!p16@NR2F2!1.48!32.05!NR2F2;;chr8:102504651..102504683,+!p1@GRHL2!1.47!28.79!GRHL2;;chr3:128206762..128206781,-!p2@GATA2!1.46!166.12!GATA2;;chr2:46524897..46524911,+!p2@EPAS1!1.46!75.94!EPAS1;;chr18:19749353..19749367,+!p4@GATA6!1.43!26.08!GATA6;;chr6:10419768..10419819,-!p6@TFAP2A!1.42!25.10!TFAP2A;;chrX:70316005..70316034,+!p2@FOXO4!1.40!43.13!FOXO4;;chrX:131547596..131547609,-!p10@MBNL3!1.36!21.73!MBNL3;;chr5:2751785..2751808,-!p2@IRX2!1.36!21.73!IRX2;;chr20:50159198..50159299,-!p1@NFATC2!1.33!29.23!NFATC2;;chr12:19556960..19556982,+!p10@AEBP2!1.32!19.77!AEBP2;;chr13:73633131..73633149,+!p1@KLF5!1.31!199.26!KLF5;;chr1:209979467..209979494,-!p1@IRF6!1.31!21.62!IRF6;;chr17:80797886..80797906,-!p1@ZNF750!1.31!19.34!ZNF750;;chr18:19749541..19749557,+!p1@GATA6!1.30!58.02!GATA6;;chr10:70320074..70320106,+!p1@TET1!1.30!37.37!TET1;;chr19:926001..926046,+!p1@ARID3A!1.25!57.47!ARID3A;;chr3:12329358..12329393,+!p3@PPARG!1.23!39.22!PPARG;;chr1:935398..935465,-!p2@HES4!1.23!32.70!HES4;;chr12:54785074..54785122,-!p2@ZNF385A!1.23!24.34!ZNF385A;;chrX:70316101..70316112,+!p5@FOXO4!1.23!16.08!FOXO4;;chr7:26191809..26191890,+!p1@NFE2L3!1.22!75.51!NFE2L3;;chr4:299227..299272,-!p1@ZNF732!1.19!14.34!ZNF732;;chrY:21906594..21906622,-!p1@KDM5D!1.18!14.02!KDM5D;;chrX:70316072..70316085,+!p4@FOXO4!1.18!14.02!FOXO4;;chr6:10415484..10415508,-!p3@TFAP2A!1.15!13.25!TFAP2A;;chr19:926055..926068,+!p2@ARID3A!1.13!27.16!ARID3A;;chr19:12075844..12075880,+!p3@ZNF763!1.13!21.40!ZNF763;;chr6:10419824..10419840,-!p9@TFAP2A!1.12!12.28!TFAP2A;;chr19:45908292..45908374,-!p1@PPP1R13L!1.11!104.19!PPP1R13L;;chr12:3068544..3068597,+!p1@TEAD4!1.10!69.64!TEAD4;;chr9:2015335..2015370,+!p1@SMARCA2!1.09!137.87!SMARCA2;;chr9:2015306..2015323,+!p3@SMARCA2!1.09!29.77!SMARCA2;;chr3:12329397..12329433,+!p2@PPARG!1.09!25.97!PPARG;;chr1:42801540..42801562,-!p4@FOXJ3!1.09!11.30!FOXJ3;;chr7:96654133..96654150,-!p1@DLX5!1.09!11.30!DLX5;;chr20:50418972..50419029,-!p1@SALL4!1.08!11.08!SALL4;;chr19:22235279..22235301,+!p1@ZNF257!1.07!20.64!ZNF257;;chr17:48046543..48046575,+!p2@DLX4!1.07!10.76!DLX4;;chr20:50792507..50792525,-!p12@ZFP64!1.07!10.76!ZFP64;;chr11:65554528..65554546,+!p1@OVOL1!1.07!10.76!OVOL1;;chr19:12163769..12163798,-!p1@ZNF878!1.06!13.58!ZNF878;;chr3:128207349..128207386,-!p3@GATA2!1.06!10.54!GATA2;;chr7:96635178..96635181,+!p1@DLX6!1.06!10.54!DLX6;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.05!10.10!MEF2B;;chr2:16080659..16080685,+!p1@MYCN!1.05!10.10!MYCN;;chr10:8097321..8097348,+!p4@GATA3!1.04!10.00!GATA3;;chr20:50418128..50418147,-!p2@SALL4!1.04!9.89!SALL4;;chr3:141747441..141747452,-!p4@TFDP2!1.03!13.80!TFDP2;;chr11:34535297..34535317,-!p1@ELF5!1.02!9.45!ELF5;;chr12:3068634..3068656,+!p5@TEAD4!1.01!9.34!TEAD4;;chr5:1887070..1887114,-!p1@IRX4!1.00!9.02!IRX4;;chr2:74229812..74229867,+!p1@TET3!0.98!21.95!TET3;;chr10:114710098..114710130,+!p2@TCF7L2!0.97!64.10!TCF7L2;;chr6:10415276..10415341,-!p2@TFAP2A!0.97!10.32!TFAP2A;;chr19:22605097..22605121,-!p2@ZNF98!0.97!8.37!ZNF98;;chr11:12696102..12696113,+!p5@TEAD1!0.97!8.26!TEAD1;;chr19:22817119..22817145,+!p1@ZNF492!0.95!13.58!ZNF492;;chr1:41827095..41827155,+!p1@FOXO6!0.95!10.76!FOXO6;;chr11:12696071..12696086,+!p3@TEAD1!0.94!10.21!TEAD1;;chr15:41913690..41913753,+!p2@MGA!0.93!18.69!MGA;;chr14:29235961..29236008,+!p1@FOXG1!0.93!7.61!FOXG1;;chr12:54779511..54779577,-!p5@ZNF385A!0.93!7.50!ZNF385A;;chr2:88752207..88752218,-!p1@FOXI3!0.92!7.28!FOXI3;;chr6:28048343..28048354,+!p1@ZNF165!0.90!6.95!ZNF165;;chr13:45010939..45011033,-!p1@TSC22D1!0.89!462.73!TSC22D1;;chr3:141747459..141747475,-!p1@TFDP2!0.89!58.67!TFDP2;;chr19:20188776..20188826,+!p1@ZNF90!0.89!18.80!ZNF90;;chr10:35484053..35484076,+!p1@CREM!0.89!17.38!CREM;;chr2:25475120..25475176,-!p2@DNMT3A!0.89!9.34!DNMT3A;;chr10:8100691..8100732,+!p5@GATA3!0.89!6.74!GATA3;;chr6:53013620..53013644,-!p1@GCM1!0.89!6.74!GCM1;;chrX:128657457..128657475,-!p1@SMARCA1!0.87!77.57!SMARCA1;;chr11:65554563..65554576,+!p2@OVOL1!0.87!6.41!OVOL1;;chr7:97840743..97840786,+!p1@BHLHA15!0.87!6.41!BHLHA15;;chr7:96634878..96634900,+!p2@DLX6!0.86!6.30!DLX6;;chr20:18038521..18038571,-!p1@OVOL2!0.85!6.08!OVOL2;;chr12:54694653..54694672,-!p2@NFE2!0.85!6.08!NFE2;;chr2:46524878..46524891,+!p3@EPAS1!0.84!10.86!EPAS1;;chr16:73082004..73082033,-!p5@ZFHX3!0.84!9.78!ZFHX3;;chrX:56258844..56258882,+!p1@KLF8!0.84!8.47!KLF8;;chr19:11998584..11998649,+!p1@ZNF69!0.83!27.49!ZNF69;;chr1:41174988..41175047,+!p4@NFYC!0.83!16.19!NFYC;;chr6:41703952..41703994,-!p4@TFEB!0.83!5.76!TFEB;;chr19:2867325..2867348,+!p1@ZNF556!0.83!5.76!ZNF556;;chr19:11959532..11959593,+!p1@ZNF439!0.82!23.14!ZNF439;;chr8:102504979..102505010,+!p2@GRHL2!0.82!5.65!GRHL2;;chr10:8097295..8097320,+!p6@GATA3!0.82!5.54!GATA3;;chr13:79177703..79177729,-!p2@POU4F1!0.82!5.54!POU4F1;;chr17:46806067..46806097,-!p1@HOXB13!0.81!5.43!HOXB13;;chr2:42795745..42795824,+!p1@MTA3!0.80!53.45!MTA3;;chr19:11925071..11925113,+!p1@ZNF440!0.80!41.50!ZNF440;;chr3:137483141..137483162,+!p1@SOX14!0.80!5.32!SOX14;;chr1:45805872..45805900,+!p2@TOE1!0.79!13.36!TOE1;;chr3:24536253..24536328,-!p1@THRB!0.79!10.32!THRB;;chr2:10091922..10091935,+!p3@GRHL1!0.79!5.22!GRHL1;;chr17:48045917..48045977,+!p1@DLX4!0.79!5.11!DLX4;;chr19:22605136..22605154,-!p1@ZNF98!0.79!5.11!ZNF98;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.78!11.63!SOHLH2;;chr8:102504690..102504704,+!p3@GRHL2!0.78!5.00!GRHL2;;chr20:42295745..42295765,+!p1@MYBL2!0.77!88.00!MYBL2;;chr3:126076242..126076257,-!p1@KLF15!0.77!6.19!KLF15;;chr19:22034809..22034878,-!p2@ZNF43!0.76!18.36!ZNF43;;chr6:126240380..126240430,+!p2@NCOA7!0.76!13.25!NCOA7;;chr15:74833584..74833626,+!p1@ARID3B!0.76!11.73!ARID3B;;chr8:11561684..11561751,+!p1@GATA4!0.76!4.78!GATA4;;chr8:37553292..37553317,+!p1@ZNF703!0.75!120.71!ZNF703;;chr19:33865009..33865090,+!p3@CEBPG!0.75!6.41!CEBPG;;chr18:45663490..45663528,-!p2@ZBTB7C!0.75!4.67!ZBTB7C;;chr10:70320041..70320065,+!p2@TET1!0.75!4.67!TET1;;chr13:28543431..28543487,-!p1@CDX2!0.75!4.67!CDX2;;chr2:176987441..176987454,+!p1@HOXD9!0.75!4.67!HOXD9;;chr20:50419055..50419066,-!p3@SALL4!0.75!4.67!SALL4;;chr2:25475094..25475112,-!p3@DNMT3A!0.75!4.56!DNMT3A;;chr3:24536231..24536249,-!p4@THRB!0.74!4.45!THRB;;chrY:2803415..2803468,+!p1@ZFY!0.74!4.45!ZFY;;chr6:34204672..34204692,+!p1@HMGA1!0.73!556.17!HMGA1;;chr2:42795651..42795676,+!p3@MTA3!0.73!12.71!MTA3;;chr17:41739283..41739297,-!p1@MEOX1!0.73!4.35!MEOX1;;chr17:48049323..48049330,+!p6@DLX4!0.72!4.24!DLX4;;chr5:1883090..1883121,-!p6@IRX4!0.72!4.24!IRX4;;chr19:53360870..53360873,-!p1@ZNF468!0.71!16.95!ZNF468;;chr3:126076264..126076305,-!p2@KLF15!0.71!5.98!KLF15;;chr7:96634908..96634923,+!p4@DLX6!0.71!4.13!DLX6;;chr12:19556947..19556956,+!p14@AEBP2!0.71!4.13!AEBP2;;chr1:204042233..204042249,+!p1@SOX13!0.70!28.47!SOX13;;chr19:11849700..11849803,-!p1@ZNF823!0.70!21.62!ZNF823;;chr6:126240356..126240379,+!p7@NCOA7!0.70!5.00!NCOA7;;chr13:73636252..73636307,+!p2@KLF5!0.70!4.78!KLF5;;chr12:54393880..54393962,+!p1@HOXC9!0.70!4.02!HOXC9;;chr19:22966893..22966924,-!p2@ZNF99!0.70!4.02!ZNF99;;chr19:58326246..58326262,-!p2@ZNF552!0.68!9.89!ZNF552;;chr19:12203100..12203132,+!p1@ZNF788!0.68!8.37!ZNF788;;chr20:45142154..45142227,-!p1@ZNF334!0.68!8.26!ZNF334;;chr11:31832658..31832681,-!p1@PAX6!0.68!3.80!PAX6;;chr10:114709999..114710031,+!p1@TCF7L2!0.67!100.50!TCF7L2;;chrX:56258811..56258838,+!p2@KLF8!0.67!5.11!KLF8;;chr19:48774586..48774670,+!p1@ZNF114!0.67!4.78!ZNF114;;chr5:1883024..1883046,-!p5@IRX4!0.67!3.69!IRX4;;chr19:11998716..11998727,+!p3@ZNF69!0.67!3.69!ZNF69;;chr6:168227552..168227609,+!p1@MLLT4!0.66!34.33!MLLT4;;chr1:33721900..33721921,+!p2@ZNF362!0.66!9.67!ZNF362;;chr7:96634850..96634874,+!p3@DLX6!0.66!3.59!DLX6;;chr11:34535332..34535347,-!p2@ELF5!0.66!3.59!ELF5;;chr14:73303182..73303194,-!p2@DPF3!0.66!3.59!DPF3;;chr17:46806098..46806118,-!p3@HOXB13!0.66!3.59!HOXB13;;chr3:12329339..12329356,+!p5@PPARG!0.66!3.59!PPARG;;chr19:42580274..42580375,+!p1@ZNF574!0.65!46.61!ZNF574;;chr19:53758058..53758088,-!p2@ZNF677!0.65!12.82!ZNF677;;chr17:46655730..46655791,-!p1@HOXB4!0.65!9.78!HOXB4;;chr7:27135591..27135658,-!p1@HOXA1!0.65!7.39!HOXA1;;chr10:97889464..97889494,+!p3@ZNF518A!0.65!7.06!ZNF518A;;chr12:3068668..3068689,+!p7@TEAD4!0.65!3.48!TEAD4;;chr2:10091783..10091811,+!p2@GRHL1!0.65!3.48!GRHL1;;chr3:141747950..141748004,-!p7@TFDP2!0.65!3.48!TFDP2;;chr10:45496346..45496409,+!p1@ZNF22!0.64!56.61!ZNF22;;chr2:85360499..85360598,+!p1@TCF7L1!0.64!21.95!TCF7L1;;chr16:73081974..73082002,-!p7@ZFHX3!0.64!4.13!ZFHX3;;chr3:12329320..12329338,+!p4@PPARG!0.64!3.69!PPARG;;chr14:29236269..29236285,+!p3@FOXG1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|fonse_cell_line=FF:0101575
|fonse_cell_line=FF:0101575
|fonse_cell_line_closure=FF:0101575
|fonse_cell_line_closure=FF:0101575
Line 66: Line 39:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|comment=
|created_by=
|creation_date=
|def=
|has_quality=
|has_quality=
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0101575
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aSCH.CNhs11875.10785-110H2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aSCH.CNhs11875.10785-110H2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aSCH.CNhs11875.10785-110H2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aSCH.CNhs11875.10785-110H2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aSCH.CNhs11875.10785-110H2.hg38.nobarcode.ctss.bed.gz
|id=FF:10785-110H2
|is_a=EFO:0002091;;FF:0000210;;FF:0101575
|is_obsolete=
|library_id=CNhs11875
|library_id_phase_based=2:CNhs11875
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10785
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10785
|name=choriocarcinoma cell line:SCH
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11875,LSID830,release010,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=110
|rna_catalog_number=
|rna_concentration=1.36185
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.01
|rna_od260/280=2.04
|rna_position=H2
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=110H2
|rna_weight_ug=64.00695
|sample_age=46
|sample_category=cell lines
|sample_cell_catalog=jcrb0251
|sample_cell_line=SCH
|sample_cell_lot=
|sample_cell_type=trophoblast cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
|sample_description=
|sample_dev_stage=
|sample_disease=choriocarcinoma
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.5056835617686e-262!GO:0043231;intracellular membrane-bound organelle;1.26472571371145e-224!GO:0043227;membrane-bound organelle;1.26472571371145e-224!GO:0043226;organelle;1.82035444313936e-222!GO:0043229;intracellular organelle;6.13668457399104e-222!GO:0005737;cytoplasm;1.19813097082044e-180!GO:0044422;organelle part;1.41226858883186e-151!GO:0044446;intracellular organelle part;5.33460507997207e-150!GO:0044444;cytoplasmic part;1.02273846013678e-133!GO:0044238;primary metabolic process;5.33254516427421e-100!GO:0044237;cellular metabolic process;2.11110482767699e-99!GO:0005634;nucleus;8.77080940859892e-98!GO:0032991;macromolecular complex;1.10003372147394e-93!GO:0030529;ribonucleoprotein complex;1.52785141103286e-89!GO:0043170;macromolecule metabolic process;1.21950204096333e-87!GO:0003723;RNA binding;1.8637687045289e-79!GO:0044428;nuclear part;1.63634393037422e-78!GO:0043233;organelle lumen;1.91717134934204e-77!GO:0031974;membrane-enclosed lumen;1.91717134934204e-77!GO:0005739;mitochondrion;3.25570678836174e-71!GO:0005515;protein binding;5.05424191218298e-59!GO:0031090;organelle membrane;5.97215204396937e-55!GO:0005840;ribosome;1.13039208657985e-53!GO:0006412;translation;7.6234165575281e-53!GO:0006396;RNA processing;1.59189122335807e-52!GO:0043283;biopolymer metabolic process;6.32242974926139e-52!GO:0010467;gene expression;2.30211694275411e-51!GO:0009058;biosynthetic process;6.54266609249802e-48!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.57015567127231e-47!GO:0031981;nuclear lumen;7.60291999151211e-47!GO:0015031;protein transport;2.0406095210299e-46!GO:0044429;mitochondrial part;2.5352158346582e-46!GO:0003735;structural constituent of ribosome;3.26515924001817e-46!GO:0033036;macromolecule localization;3.97630934141551e-46!GO:0016043;cellular component organization and biogenesis;4.45943448654923e-45!GO:0043234;protein complex;1.07282605058496e-44!GO:0019538;protein metabolic process;3.27776881766711e-44!GO:0008104;protein localization;1.68995835672671e-42!GO:0031967;organelle envelope;2.16428089771821e-42!GO:0045184;establishment of protein localization;3.59014707565317e-42!GO:0031975;envelope;4.21189915763287e-42!GO:0044249;cellular biosynthetic process;1.3357371045224e-41!GO:0009059;macromolecule biosynthetic process;1.81467951627974e-41!GO:0016071;mRNA metabolic process;3.84258809980124e-41!GO:0033279;ribosomal subunit;8.50779391086729e-41!GO:0044260;cellular macromolecule metabolic process;8.96190522762404e-39!GO:0044267;cellular protein metabolic process;1.02834696822508e-38!GO:0008380;RNA splicing;1.10182374250622e-37!GO:0006397;mRNA processing;1.91199622162511e-35!GO:0065003;macromolecular complex assembly;3.10817681508618e-35!GO:0043228;non-membrane-bound organelle;1.00084231671107e-34!GO:0043232;intracellular non-membrane-bound organelle;1.00084231671107e-34!GO:0003676;nucleic acid binding;1.99992497554178e-34!GO:0046907;intracellular transport;7.23026826704197e-34!GO:0006996;organelle organization and biogenesis;1.97489639394164e-33!GO:0022607;cellular component assembly;3.62798948831372e-33!GO:0005829;cytosol;4.1242330452359e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.31383069648202e-33!GO:0019866;organelle inner membrane;2.6429626408779e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.93525242206227e-29!GO:0005740;mitochondrial envelope;2.8626133813603e-29!GO:0006886;intracellular protein transport;1.32582991943363e-28!GO:0005654;nucleoplasm;4.80735119525105e-28!GO:0005743;mitochondrial inner membrane;7.42052312611032e-28!GO:0031966;mitochondrial membrane;9.27710809286238e-28!GO:0005681;spliceosome;1.03665687410644e-27!GO:0007049;cell cycle;5.05939822707951e-26!GO:0006259;DNA metabolic process;6.33869680605628e-26!GO:0016070;RNA metabolic process;1.5370643586073e-25!GO:0006119;oxidative phosphorylation;1.53732439448342e-23!GO:0000166;nucleotide binding;2.26819622225224e-23!GO:0044445;cytosolic part;4.21923525411712e-23!GO:0044451;nucleoplasm part;1.01929955127491e-22!GO:0012505;endomembrane system;2.22839272278405e-22!GO:0051649;establishment of cellular localization;2.285035590072e-22!GO:0051641;cellular localization;3.42607589389104e-22!GO:0016874;ligase activity;7.89366049800562e-22!GO:0044455;mitochondrial membrane part;1.65562024231237e-21!GO:0015935;small ribosomal subunit;2.26420236750325e-21!GO:0022618;protein-RNA complex assembly;7.05027604244497e-21!GO:0031980;mitochondrial lumen;1.68578470564453e-20!GO:0005759;mitochondrial matrix;1.68578470564453e-20!GO:0015934;large ribosomal subunit;1.915779230672e-20!GO:0044265;cellular macromolecule catabolic process;6.30100958844157e-20!GO:0022402;cell cycle process;1.09450952966348e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;4.48381792794664e-19!GO:0006511;ubiquitin-dependent protein catabolic process;6.21984433582737e-19!GO:0005730;nucleolus;6.60221119108527e-19!GO:0019941;modification-dependent protein catabolic process;7.41191937200389e-19!GO:0043632;modification-dependent macromolecule catabolic process;7.41191937200389e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;8.19792827169766e-19!GO:0044257;cellular protein catabolic process;1.48166475407358e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.67480782384364e-18!GO:0016462;pyrophosphatase activity;1.69320957896848e-18!GO:0006512;ubiquitin cycle;3.24738778888231e-18!GO:0005783;endoplasmic reticulum;9.54947477766591e-18!GO:0043285;biopolymer catabolic process;1.85681198840896e-17!GO:0017111;nucleoside-triphosphatase activity;2.03316312847138e-17!GO:0006457;protein folding;2.05347351187586e-17!GO:0000278;mitotic cell cycle;2.26876265253249e-17!GO:0048770;pigment granule;4.82979421853492e-17!GO:0042470;melanosome;4.82979421853492e-17!GO:0044432;endoplasmic reticulum part;5.55929315565971e-17!GO:0005694;chromosome;7.22920222196567e-17!GO:0008134;transcription factor binding;7.23144879714496e-17!GO:0032553;ribonucleotide binding;1.02341756705685e-16!GO:0032555;purine ribonucleotide binding;1.02341756705685e-16!GO:0044248;cellular catabolic process;1.11840631646589e-16!GO:0009057;macromolecule catabolic process;1.61992831484002e-16!GO:0051186;cofactor metabolic process;1.73260796323658e-16!GO:0005794;Golgi apparatus;2.36581574991692e-16!GO:0000502;proteasome complex (sensu Eukaryota);2.63963057689917e-16!GO:0005761;mitochondrial ribosome;2.78227772674902e-16!GO:0000313;organellar ribosome;2.78227772674902e-16!GO:0008135;translation factor activity, nucleic acid binding;6.46611903715472e-16!GO:0017076;purine nucleotide binding;8.2288204966716e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.74953151276707e-16!GO:0030163;protein catabolic process;9.9564185614313e-16!GO:0022403;cell cycle phase;1.72508171585418e-15!GO:0005746;mitochondrial respiratory chain;2.73233654814096e-15!GO:0006974;response to DNA damage stimulus;3.02159148864953e-15!GO:0051301;cell division;4.79966325994439e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.14232153473667e-15!GO:0006605;protein targeting;7.01263603325873e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;9.00475809448246e-15!GO:0000375;RNA splicing, via transesterification reactions;9.00475809448246e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.00475809448246e-15!GO:0005524;ATP binding;9.4477389048253e-15!GO:0044427;chromosomal part;1.29068718679997e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.04015746873998e-14!GO:0003954;NADH dehydrogenase activity;2.04015746873998e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.04015746873998e-14!GO:0051276;chromosome organization and biogenesis;2.58247477063727e-14!GO:0032559;adenyl ribonucleotide binding;4.46112115432027e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.1078820852481e-14!GO:0005635;nuclear envelope;1.01728442898868e-13!GO:0006281;DNA repair;1.01865730895713e-13!GO:0006732;coenzyme metabolic process;1.73217617830383e-13!GO:0006413;translational initiation;1.80038205416742e-13!GO:0000087;M phase of mitotic cell cycle;1.82074978790506e-13!GO:0007067;mitosis;2.08672892510737e-13!GO:0031965;nuclear membrane;2.3418489051352e-13!GO:0048193;Golgi vesicle transport;2.38390873389746e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.99987845576491e-13!GO:0005789;endoplasmic reticulum membrane;4.05997867591866e-13!GO:0016604;nuclear body;4.11006214568887e-13!GO:0016887;ATPase activity;4.93735106052541e-13!GO:0051082;unfolded protein binding;5.02418607393871e-13!GO:0042775;organelle ATP synthesis coupled electron transport;5.02418607393871e-13!GO:0042773;ATP synthesis coupled electron transport;5.02418607393871e-13!GO:0030554;adenyl nucleotide binding;5.17680445344207e-13!GO:0042254;ribosome biogenesis and assembly;7.28081801890941e-13!GO:0042623;ATPase activity, coupled;8.17754122516683e-13!GO:0003743;translation initiation factor activity;8.29408233723335e-13!GO:0006446;regulation of translational initiation;8.91921035232457e-13!GO:0000279;M phase;1.06973103010628e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.51363038251767e-12!GO:0045271;respiratory chain complex I;1.51363038251767e-12!GO:0005747;mitochondrial respiratory chain complex I;1.51363038251767e-12!GO:0044453;nuclear membrane part;2.07766234900938e-12!GO:0006399;tRNA metabolic process;2.43533060059014e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.12417928485833e-12!GO:0016192;vesicle-mediated transport;6.10043149885634e-12!GO:0043412;biopolymer modification;6.15484536207496e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.023890716474e-11!GO:0008565;protein transporter activity;1.44125508911606e-11!GO:0016607;nuclear speck;4.07386531034569e-11!GO:0004386;helicase activity;4.59163491497365e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;5.89968600923964e-11!GO:0005643;nuclear pore;6.54969227852568e-11!GO:0003712;transcription cofactor activity;8.03005909358191e-11!GO:0006461;protein complex assembly;9.7002489105231e-11!GO:0009259;ribonucleotide metabolic process;1.01852569421799e-10!GO:0009719;response to endogenous stimulus;1.04745387209503e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.41498808904496e-10!GO:0006323;DNA packaging;2.28262684399007e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.74817111017275e-10!GO:0065002;intracellular protein transport across a membrane;2.76859451767658e-10!GO:0006260;DNA replication;3.22029271579103e-10!GO:0051188;cofactor biosynthetic process;3.27478496494761e-10!GO:0006163;purine nucleotide metabolic process;3.48427222578795e-10!GO:0006464;protein modification process;3.75475735068139e-10!GO:0009056;catabolic process;5.33134688215901e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.43398812959853e-10!GO:0004812;aminoacyl-tRNA ligase activity;5.43398812959853e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.43398812959853e-10!GO:0015986;ATP synthesis coupled proton transport;7.03594276830271e-10!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.03594276830271e-10!GO:0008639;small protein conjugating enzyme activity;7.31061127996164e-10!GO:0050657;nucleic acid transport;8.43682695225867e-10!GO:0051236;establishment of RNA localization;8.43682695225867e-10!GO:0050658;RNA transport;8.43682695225867e-10!GO:0006164;purine nucleotide biosynthetic process;9.22575015355167e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.02387679193005e-09!GO:0004842;ubiquitin-protein ligase activity;1.16986537784024e-09!GO:0009150;purine ribonucleotide metabolic process;1.1759952878705e-09!GO:0006366;transcription from RNA polymerase II promoter;1.1759952878705e-09!GO:0009260;ribonucleotide biosynthetic process;1.19223498855462e-09!GO:0006403;RNA localization;1.45348963306565e-09!GO:0019787;small conjugating protein ligase activity;1.60939701791286e-09!GO:0043038;amino acid activation;1.63990670426644e-09!GO:0006418;tRNA aminoacylation for protein translation;1.63990670426644e-09!GO:0043039;tRNA aminoacylation;1.63990670426644e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.36089387090046e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.36089387090046e-09!GO:0006913;nucleocytoplasmic transport;2.4061138222133e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.04971265799399e-09!GO:0008026;ATP-dependent helicase activity;3.18320120951408e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.66534233125038e-09!GO:0000074;regulation of progression through cell cycle;3.86619099629581e-09!GO:0009141;nucleoside triphosphate metabolic process;4.03573750815592e-09!GO:0046930;pore complex;4.28380428727471e-09!GO:0016469;proton-transporting two-sector ATPase complex;4.80244498165389e-09!GO:0051726;regulation of cell cycle;4.86775955680385e-09!GO:0051169;nuclear transport;5.0485444203056e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.28471751248808e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.28471751248808e-09!GO:0019829;cation-transporting ATPase activity;7.65847544277422e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.05690891603651e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.05690891603651e-08!GO:0043687;post-translational protein modification;1.24869449690757e-08!GO:0009055;electron carrier activity;1.28217594166207e-08!GO:0005768;endosome;1.3949276180322e-08!GO:0006752;group transfer coenzyme metabolic process;1.41722481210154e-08!GO:0006754;ATP biosynthetic process;1.5092098078642e-08!GO:0006753;nucleoside phosphate metabolic process;1.5092098078642e-08!GO:0009108;coenzyme biosynthetic process;1.72665742371355e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.78545058589186e-08!GO:0005793;ER-Golgi intermediate compartment;2.10465765224017e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.23134024500828e-08!GO:0048475;coated membrane;2.43549503624877e-08!GO:0030117;membrane coat;2.43549503624877e-08!GO:0016072;rRNA metabolic process;2.91361991107926e-08!GO:0006364;rRNA processing;2.96100802042475e-08!GO:0046034;ATP metabolic process;3.45316239565673e-08!GO:0051028;mRNA transport;3.68247772247313e-08!GO:0065004;protein-DNA complex assembly;4.42785244455012e-08!GO:0000785;chromatin;5.24438014146803e-08!GO:0017038;protein import;5.52153416506394e-08!GO:0016740;transferase activity;5.6604025690858e-08!GO:0030532;small nuclear ribonucleoprotein complex;8.33036636664294e-08!GO:0016881;acid-amino acid ligase activity;1.12784904851563e-07!GO:0009060;aerobic respiration;1.50739330807286e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.6107447168278e-07!GO:0016568;chromatin modification;2.7057758849255e-07!GO:0043623;cellular protein complex assembly;3.65719635122186e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.81819694274951e-07!GO:0003713;transcription coactivator activity;4.71091383783332e-07!GO:0043566;structure-specific DNA binding;5.35987795247748e-07!GO:0045259;proton-transporting ATP synthase complex;5.83113628403552e-07!GO:0006333;chromatin assembly or disassembly;6.76420184908784e-07!GO:0045333;cellular respiration;7.23229102627218e-07!GO:0003697;single-stranded DNA binding;7.36277530193337e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.77602474751559e-07!GO:0044431;Golgi apparatus part;1.01820174305543e-06!GO:0005667;transcription factor complex;1.17349789183672e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.18984746938535e-06!GO:0000245;spliceosome assembly;1.28796902388544e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.3344629852474e-06!GO:0051329;interphase of mitotic cell cycle;1.89875129910429e-06!GO:0006099;tricarboxylic acid cycle;1.90585511277497e-06!GO:0046356;acetyl-CoA catabolic process;1.90585511277497e-06!GO:0008654;phospholipid biosynthetic process;2.08828313241806e-06!GO:0032446;protein modification by small protein conjugation;2.23979303147509e-06!GO:0051427;hormone receptor binding;2.24518941045629e-06!GO:0006084;acetyl-CoA metabolic process;2.29049753857373e-06!GO:0030120;vesicle coat;2.29828533295927e-06!GO:0030662;coated vesicle membrane;2.29828533295927e-06!GO:0016779;nucleotidyltransferase activity;2.43244127583063e-06!GO:0019222;regulation of metabolic process;2.43244127583063e-06!GO:0007005;mitochondrion organization and biogenesis;2.58858974692299e-06!GO:0016567;protein ubiquitination;3.15393589120165e-06!GO:0051325;interphase;3.51968427593645e-06!GO:0016853;isomerase activity;3.5554682788153e-06!GO:0015630;microtubule cytoskeleton;4.06115594456495e-06!GO:0005773;vacuole;4.15045465077936e-06!GO:0004298;threonine endopeptidase activity;4.21198344047565e-06!GO:0009109;coenzyme catabolic process;4.68469245324604e-06!GO:0035257;nuclear hormone receptor binding;5.13274410021888e-06!GO:0006613;cotranslational protein targeting to membrane;5.75233401831854e-06!GO:0051246;regulation of protein metabolic process;6.15829104095089e-06!GO:0005762;mitochondrial large ribosomal subunit;6.22449367011304e-06!GO:0000315;organellar large ribosomal subunit;6.22449367011304e-06!GO:0050794;regulation of cellular process;7.53598693284585e-06!GO:0016787;hydrolase activity;9.21937230596529e-06!GO:0031982;vesicle;9.59807537577078e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.04216819446297e-05!GO:0051187;cofactor catabolic process;1.04301042608051e-05!GO:0000775;chromosome, pericentric region;1.06848322197251e-05!GO:0009117;nucleotide metabolic process;1.14652939529636e-05!GO:0003724;RNA helicase activity;1.21146295197399e-05!GO:0007051;spindle organization and biogenesis;1.23703835735524e-05!GO:0005819;spindle;1.27634454010113e-05!GO:0006818;hydrogen transport;1.34016523518243e-05!GO:0031410;cytoplasmic vesicle;1.60948619974913e-05!GO:0016563;transcription activator activity;1.6505046501363e-05!GO:0015992;proton transport;1.84605787084502e-05!GO:0000151;ubiquitin ligase complex;2.24101370416314e-05!GO:0006261;DNA-dependent DNA replication;2.31971466763921e-05!GO:0003899;DNA-directed RNA polymerase activity;2.46337983894585e-05!GO:0048471;perinuclear region of cytoplasm;2.53721979817606e-05!GO:0031988;membrane-bound vesicle;2.58488956906715e-05!GO:0005788;endoplasmic reticulum lumen;2.99955925414158e-05!GO:0005770;late endosome;3.27828746099149e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.63353254992618e-05!GO:0043021;ribonucleoprotein binding;3.69313548379035e-05!GO:0005813;centrosome;3.73797584279522e-05!GO:0044440;endosomal part;3.97770017117141e-05!GO:0010008;endosome membrane;3.97770017117141e-05!GO:0008610;lipid biosynthetic process;4.13073960208736e-05!GO:0012501;programmed cell death;4.58757788953291e-05!GO:0006915;apoptosis;4.78367872448533e-05!GO:0031252;leading edge;4.95008607971551e-05!GO:0000139;Golgi membrane;5.06406295241006e-05!GO:0051170;nuclear import;5.39396752483299e-05!GO:0005525;GTP binding;5.67337100802521e-05!GO:0006334;nucleosome assembly;6.56906118060744e-05!GO:0006793;phosphorus metabolic process;6.60412537098003e-05!GO:0006796;phosphate metabolic process;6.60412537098003e-05!GO:0000314;organellar small ribosomal subunit;7.03588147316882e-05!GO:0005763;mitochondrial small ribosomal subunit;7.03588147316882e-05!GO:0005815;microtubule organizing center;8.13125949173016e-05!GO:0016310;phosphorylation;8.14780374096148e-05!GO:0031323;regulation of cellular metabolic process;8.86052565542565e-05!GO:0031497;chromatin assembly;9.52101729150042e-05!GO:0006350;transcription;0.000111948543485466!GO:0000323;lytic vacuole;0.000125898674466517!GO:0005764;lysosome;0.000125898674466517!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000128397931345308!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000133905625611108!GO:0006606;protein import into nucleus;0.000153877203143781!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000154555633096763!GO:0045786;negative regulation of progression through cell cycle;0.000154555633096763!GO:0046474;glycerophospholipid biosynthetic process;0.000163218428376066!GO:0005048;signal sequence binding;0.000164419526066952!GO:0008033;tRNA processing;0.000176808787435643!GO:0030867;rough endoplasmic reticulum membrane;0.000177649007876667!GO:0006839;mitochondrial transport;0.000179621049059789!GO:0008186;RNA-dependent ATPase activity;0.000183851148177067!GO:0019752;carboxylic acid metabolic process;0.000214366372070382!GO:0005769;early endosome;0.000217779009006301!GO:0006402;mRNA catabolic process;0.000234221934656254!GO:0006082;organic acid metabolic process;0.000237532792997909!GO:0007264;small GTPase mediated signal transduction;0.000238469419659369!GO:0043681;protein import into mitochondrion;0.000240396841144882!GO:0005798;Golgi-associated vesicle;0.000243975196138232!GO:0003690;double-stranded DNA binding;0.000244802476223603!GO:0008219;cell death;0.000247009437541218!GO:0016265;death;0.000247009437541218!GO:0016126;sterol biosynthetic process;0.000251045519799233!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000251661558989594!GO:0008094;DNA-dependent ATPase activity;0.000261861355161318!GO:0051168;nuclear export;0.000272059553289282!GO:0046467;membrane lipid biosynthetic process;0.00027749833713929!GO:0006612;protein targeting to membrane;0.000308729927176098!GO:0005905;coated pit;0.000325662597862578!GO:0003682;chromatin binding;0.000346027724408303!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000361426774952765!GO:0015399;primary active transmembrane transporter activity;0.000361426774952765!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000367241174548987!GO:0006916;anti-apoptosis;0.000389985770315611!GO:0006626;protein targeting to mitochondrion;0.000392168344264892!GO:0016044;membrane organization and biogenesis;0.000416540473446803!GO:0016741;transferase activity, transferring one-carbon groups;0.000425199216341665!GO:0022890;inorganic cation transmembrane transporter activity;0.000425242802765273!GO:0005791;rough endoplasmic reticulum;0.000437658062187763!GO:0000049;tRNA binding;0.00052267053336343!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000524678828488393!GO:0006401;RNA catabolic process;0.000529656441949934!GO:0010468;regulation of gene expression;0.000533538594543504!GO:0015980;energy derivation by oxidation of organic compounds;0.000538815103589763!GO:0004004;ATP-dependent RNA helicase activity;0.000552009573329044!GO:0006520;amino acid metabolic process;0.000570697768485502!GO:0051789;response to protein stimulus;0.00057264146008354!GO:0006986;response to unfolded protein;0.00057264146008354!GO:0007059;chromosome segregation;0.000576074100764365!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000602843366968008!GO:0005657;replication fork;0.000632898485055988!GO:0008168;methyltransferase activity;0.000651644061506835!GO:0032561;guanyl ribonucleotide binding;0.000651644061506835!GO:0019001;guanyl nucleotide binding;0.000651644061506835!GO:0030118;clathrin coat;0.000661753781123293!GO:0004576;oligosaccharyl transferase activity;0.00069118484948143!GO:0035258;steroid hormone receptor binding;0.000692014908607838!GO:0006414;translational elongation;0.000749398700438701!GO:0051920;peroxiredoxin activity;0.000755753026605677!GO:0000776;kinetochore;0.000755753026605677!GO:0007010;cytoskeleton organization and biogenesis;0.000756969236368213!GO:0005684;U2-dependent spliceosome;0.000775101376195803!GO:0019843;rRNA binding;0.000782695944914941!GO:0019899;enzyme binding;0.000782695944914941!GO:0016363;nuclear matrix;0.000847457961149178!GO:0006650;glycerophospholipid metabolic process;0.000847457961149178!GO:0000075;cell cycle checkpoint;0.000904314437203633!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000922286828570347!GO:0008250;oligosaccharyl transferase complex;0.000925871577171279!GO:0015631;tubulin binding;0.000930798488455553!GO:0043069;negative regulation of programmed cell death;0.000960290623083196!GO:0048487;beta-tubulin binding;0.000985328764480377!GO:0048500;signal recognition particle;0.00102135187540798!GO:0005885;Arp2/3 protein complex;0.00102135187540798!GO:0006352;transcription initiation;0.00103980701065255!GO:0046489;phosphoinositide biosynthetic process;0.00104812057161043!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00106052274645763!GO:0043066;negative regulation of apoptosis;0.00107356222089814!GO:0030119;AP-type membrane coat adaptor complex;0.0011219841365104!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00118620277451164!GO:0016491;oxidoreductase activity;0.0011892159057661!GO:0045454;cell redox homeostasis;0.0012235322064258!GO:0016859;cis-trans isomerase activity;0.0012331145898944!GO:0003924;GTPase activity;0.00123744335565898!GO:0030384;phosphoinositide metabolic process;0.0012434165715943!GO:0042802;identical protein binding;0.00128143133313353!GO:0031072;heat shock protein binding;0.00137379087162274!GO:0044452;nucleolar part;0.00138057095060635!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00149141546646827!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00149141546646827!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00152066646503879!GO:0005758;mitochondrial intermembrane space;0.00153836232750645!GO:0016251;general RNA polymerase II transcription factor activity;0.00157276021189672!GO:0005637;nuclear inner membrane;0.00169907148323402!GO:0003714;transcription corepressor activity;0.00175898291080654!GO:0003729;mRNA binding;0.00182695596039284!GO:0007052;mitotic spindle organization and biogenesis;0.00182996210524679!GO:0006091;generation of precursor metabolites and energy;0.00184492559599155!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00185120340981748!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00185120340981748!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00185120340981748!GO:0033116;ER-Golgi intermediate compartment membrane;0.00186859819592708!GO:0009165;nucleotide biosynthetic process;0.00188764984186707!GO:0000059;protein import into nucleus, docking;0.00190592306035436!GO:0030131;clathrin adaptor complex;0.00192544199389544!GO:0030521;androgen receptor signaling pathway;0.00199189914567479!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00202932416956355!GO:0008652;amino acid biosynthetic process;0.00208666731086565!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00234175790453378!GO:0032774;RNA biosynthetic process;0.00234343881243285!GO:0046483;heterocycle metabolic process;0.00244188625245878!GO:0030663;COPI coated vesicle membrane;0.00261128549890624!GO:0030126;COPI vesicle coat;0.00261128549890624!GO:0016197;endosome transport;0.00265390080596997!GO:0007006;mitochondrial membrane organization and biogenesis;0.00267519815548148!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00269733159227961!GO:0031970;organelle envelope lumen;0.00269837002226038!GO:0006351;transcription, DNA-dependent;0.00270958289937781!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00277796483485231!GO:0045047;protein targeting to ER;0.00277796483485231!GO:0006383;transcription from RNA polymerase III promoter;0.00281499326356526!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00290430926861303!GO:0006695;cholesterol biosynthetic process;0.00293317675030727!GO:0030176;integral to endoplasmic reticulum membrane;0.00300151754521956!GO:0007040;lysosome organization and biogenesis;0.00305080830160391!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00305080830160391!GO:0006643;membrane lipid metabolic process;0.00307898646691687!GO:0006891;intra-Golgi vesicle-mediated transport;0.00320800756493483!GO:0051252;regulation of RNA metabolic process;0.00325018833832926!GO:0030133;transport vesicle;0.00326397842204972!GO:0003711;transcription elongation regulator activity;0.00358680856966321!GO:0050789;regulation of biological process;0.00377621578712015!GO:0031901;early endosome membrane;0.00402308548868954!GO:0006417;regulation of translation;0.00411956495407242!GO:0044262;cellular carbohydrate metabolic process;0.00421165789490755!GO:0043492;ATPase activity, coupled to movement of substances;0.0042669413959658!GO:0051087;chaperone binding;0.00439524744630208!GO:0016408;C-acyltransferase activity;0.00455861746278677!GO:0008139;nuclear localization sequence binding;0.00456717434358544!GO:0045045;secretory pathway;0.00457130827858086!GO:0016860;intramolecular oxidoreductase activity;0.00465823822669619!GO:0006302;double-strand break repair;0.00467001716396909!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0047254674447849!GO:0009081;branched chain family amino acid metabolic process;0.00480258128709453!GO:0006338;chromatin remodeling;0.00483766726975299!GO:0018196;peptidyl-asparagine modification;0.00513135014695827!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00513135014695827!GO:0051052;regulation of DNA metabolic process;0.00519474139130964!GO:0030880;RNA polymerase complex;0.00530957705057053!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00538576477582262!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00542285584836568!GO:0004674;protein serine/threonine kinase activity;0.00542709543107014!GO:0030518;steroid hormone receptor signaling pathway;0.00552090752864214!GO:0031324;negative regulation of cellular metabolic process;0.00552978685693102!GO:0000228;nuclear chromosome;0.00559129212674149!GO:0016564;transcription repressor activity;0.00559831675570946!GO:0016272;prefoldin complex;0.0057740501923133!GO:0007017;microtubule-based process;0.005815474077815!GO:0006506;GPI anchor biosynthetic process;0.00605121844508672!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00610878034075359!GO:0008312;7S RNA binding;0.00612989038175655!GO:0006284;base-excision repair;0.00642751663535871!GO:0006767;water-soluble vitamin metabolic process;0.00642751663535871!GO:0043022;ribosome binding;0.00644650936347739!GO:0006405;RNA export from nucleus;0.00649633005418383!GO:0003702;RNA polymerase II transcription factor activity;0.00651421216370816!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00660726664820187!GO:0001726;ruffle;0.00672001127102311!GO:0005669;transcription factor TFIID complex;0.00673076836827951!GO:0043488;regulation of mRNA stability;0.00706278637760029!GO:0043487;regulation of RNA stability;0.00706278637760029!GO:0042981;regulation of apoptosis;0.00753027329204691!GO:0030137;COPI-coated vesicle;0.00763072892616779!GO:0050681;androgen receptor binding;0.00794948582715763!GO:0030134;ER to Golgi transport vesicle;0.00797691281444658!GO:0005774;vacuolar membrane;0.00797691281444658!GO:0032508;DNA duplex unwinding;0.00798018945762856!GO:0032392;DNA geometric change;0.00798018945762856!GO:0008022;protein C-terminus binding;0.0080747100971465!GO:0000082;G1/S transition of mitotic cell cycle;0.00828747883340543!GO:0017166;vinculin binding;0.00831721304644297!GO:0051540;metal cluster binding;0.00846822167831493!GO:0051536;iron-sulfur cluster binding;0.00846822167831493!GO:0030132;clathrin coat of coated pit;0.00881955393413391!GO:0006505;GPI anchor metabolic process;0.00888558032522259!GO:0045947;negative regulation of translational initiation;0.00892372724714805!GO:0007033;vacuole organization and biogenesis;0.00892437196634041!GO:0006519;amino acid and derivative metabolic process;0.00901299868110414!GO:0046966;thyroid hormone receptor binding;0.00945088504456682!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00945366252631826!GO:0051539;4 iron, 4 sulfur cluster binding;0.00953415579712012!GO:0003678;DNA helicase activity;0.00967140188831879!GO:0043067;regulation of programmed cell death;0.00967242802567309!GO:0043414;biopolymer methylation;0.00968011637283916!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00986440364375315!GO:0000428;DNA-directed RNA polymerase complex;0.00986440364375315!GO:0043284;biopolymer biosynthetic process;0.0100681720775621!GO:0005832;chaperonin-containing T-complex;0.0103317524736484!GO:0006644;phospholipid metabolic process;0.0104931784304262!GO:0030036;actin cytoskeleton organization and biogenesis;0.0107097553608129!GO:0006144;purine base metabolic process;0.0108939060863155!GO:0032259;methylation;0.0117442509180639!GO:0006595;polyamine metabolic process;0.0117516831225189!GO:0000096;sulfur amino acid metabolic process;0.0121222106524397!GO:0031529;ruffle organization and biogenesis;0.0123629756743749!GO:0030027;lamellipodium;0.0125466166854023!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0132090795755145!GO:0015002;heme-copper terminal oxidase activity;0.0132090795755145!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0132090795755145!GO:0004129;cytochrome-c oxidase activity;0.0132090795755145!GO:0003684;damaged DNA binding;0.0132414245375597!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0132414245375597!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0134397672441065!GO:0007265;Ras protein signal transduction;0.0134695449020955!GO:0007021;tubulin folding;0.0138380464583236!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0138707793833541!GO:0046983;protein dimerization activity;0.0141066011501263!GO:0006268;DNA unwinding during replication;0.0141095154512965!GO:0006497;protein amino acid lipidation;0.014663902957418!GO:0008287;protein serine/threonine phosphatase complex;0.0147685982599344!GO:0044454;nuclear chromosome part;0.014809203341204!GO:0016407;acetyltransferase activity;0.0149263059429572!GO:0006376;mRNA splice site selection;0.0149562625846642!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0149562625846642!GO:0048523;negative regulation of cellular process;0.0151815888690153!GO:0042158;lipoprotein biosynthetic process;0.0151885320731175!GO:0045449;regulation of transcription;0.0153606565208666!GO:0030029;actin filament-based process;0.0155832256819165!GO:0050178;phenylpyruvate tautomerase activity;0.0157663187133193!GO:0000786;nucleosome;0.0161326147726434!GO:0004527;exonuclease activity;0.0161398521361673!GO:0003756;protein disulfide isomerase activity;0.0163696655689162!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0163696655689162!GO:0030127;COPII vesicle coat;0.0165239648724844!GO:0012507;ER to Golgi transport vesicle membrane;0.0165239648724844!GO:0006892;post-Golgi vesicle-mediated transport;0.0168760178667236!GO:0005996;monosaccharide metabolic process;0.0169773784082655!GO:0019318;hexose metabolic process;0.0171183208905172!GO:0008092;cytoskeletal protein binding;0.0173630634061861!GO:0006611;protein export from nucleus;0.0176581244918484!GO:0006740;NADPH regeneration;0.0180792225432727!GO:0006098;pentose-phosphate shunt;0.0180792225432727!GO:0001725;stress fiber;0.0185177615040683!GO:0032432;actin filament bundle;0.0185177615040683!GO:0007088;regulation of mitosis;0.0185309626203149!GO:0042393;histone binding;0.0186175692950731!GO:0005869;dynactin complex;0.0192320012587643!GO:0044437;vacuolar part;0.0193728822886886!GO:0008276;protein methyltransferase activity;0.0197070494771074!GO:0030658;transport vesicle membrane;0.0199785794885923!GO:0003677;DNA binding;0.020486404245186!GO:0006289;nucleotide-excision repair;0.0206306029145902!GO:0044438;microbody part;0.0211459229098904!GO:0044439;peroxisomal part;0.0211459229098904!GO:0031968;organelle outer membrane;0.0218383362570261!GO:0031124;mRNA 3'-end processing;0.0222393865060785!GO:0008180;signalosome;0.0222393865060785!GO:0009451;RNA modification;0.0222393865060785!GO:0051287;NAD binding;0.0222898866412411!GO:0005741;mitochondrial outer membrane;0.0223056961697389!GO:0008097;5S rRNA binding;0.022641805631242!GO:0019783;small conjugating protein-specific protease activity;0.0226508388104735!GO:0022406;membrane docking;0.0226508388104735!GO:0048278;vesicle docking;0.0226508388104735!GO:0000793;condensed chromosome;0.0227582956048819!GO:0005850;eukaryotic translation initiation factor 2 complex;0.022810319576758!GO:0031123;RNA 3'-end processing;0.0228969218548051!GO:0006541;glutamine metabolic process;0.0231239333928713!GO:0030145;manganese ion binding;0.0231724777722643!GO:0019867;outer membrane;0.0232211302383254!GO:0003746;translation elongation factor activity;0.0235924006913722!GO:0000123;histone acetyltransferase complex;0.0235951033338371!GO:0008538;proteasome activator activity;0.0238071792354141!GO:0006275;regulation of DNA replication;0.0242324989723741!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0244670579902809!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0248330047875748!GO:0030833;regulation of actin filament polymerization;0.0248330047875748!GO:0008234;cysteine-type peptidase activity;0.0250378357050745!GO:0031903;microbody membrane;0.0259645857525852!GO:0005778;peroxisomal membrane;0.0259645857525852!GO:0000339;RNA cap binding;0.026056247714477!GO:0046128;purine ribonucleoside metabolic process;0.026056247714477!GO:0042278;purine nucleoside metabolic process;0.026056247714477!GO:0009112;nucleobase metabolic process;0.0262808923154209!GO:0009308;amine metabolic process;0.0264561313240714!GO:0035267;NuA4 histone acetyltransferase complex;0.0276339083459988!GO:0031625;ubiquitin protein ligase binding;0.0276339083459988!GO:0006730;one-carbon compound metabolic process;0.0276339083459988!GO:0043189;H4/H2A histone acetyltransferase complex;0.0280097818165251!GO:0004177;aminopeptidase activity;0.0283061015842252!GO:0022884;macromolecule transmembrane transporter activity;0.028315928622369!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.028315928622369!GO:0006516;glycoprotein catabolic process;0.0285693110381746!GO:0006310;DNA recombination;0.0286892644932156!GO:0044255;cellular lipid metabolic process;0.0288652068474512!GO:0000922;spindle pole;0.028917014010534!GO:0004843;ubiquitin-specific protease activity;0.0291534088246616!GO:0004518;nuclease activity;0.0297536199330594!GO:0006007;glucose catabolic process;0.0300424819914281!GO:0031326;regulation of cellular biosynthetic process;0.030684967261376!GO:0004185;serine carboxypeptidase activity;0.031225969116966!GO:0009892;negative regulation of metabolic process;0.0312688491788349!GO:0045767;regulation of anti-apoptosis;0.0315412968476939!GO:0008320;protein transmembrane transporter activity;0.031658539858897!GO:0006904;vesicle docking during exocytosis;0.031658539858897!GO:0009083;branched chain family amino acid catabolic process;0.0319527738480784!GO:0016125;sterol metabolic process;0.0327904584285645!GO:0042809;vitamin D receptor binding;0.0333390588808658!GO:0006779;porphyrin biosynthetic process;0.0335646901401165!GO:0033014;tetrapyrrole biosynthetic process;0.0335646901401165!GO:0008017;microtubule binding;0.0335646901401165!GO:0051059;NF-kappaB binding;0.0341156701326299!GO:0051656;establishment of organelle localization;0.0341156701326299!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.034388469786455!GO:0006979;response to oxidative stress;0.0345971376326831!GO:0000178;exosome (RNase complex);0.0347656235768413!GO:0006378;mRNA polyadenylation;0.0349531267263321!GO:0031902;late endosome membrane;0.0349531267263321!GO:0005784;translocon complex;0.0357213677427049!GO:0006066;alcohol metabolic process;0.0358616462787554!GO:0000086;G2/M transition of mitotic cell cycle;0.0361203966884206!GO:0005876;spindle microtubule;0.0366499855317482!GO:0033559;unsaturated fatty acid metabolic process;0.0367924492767819!GO:0006636;unsaturated fatty acid biosynthetic process;0.0367924492767819!GO:0005874;microtubule;0.0368513115696321!GO:0006733;oxidoreduction coenzyme metabolic process;0.0370497742583723!GO:0030660;Golgi-associated vesicle membrane;0.0372787781013023!GO:0004221;ubiquitin thiolesterase activity;0.0372908877982871!GO:0016717;oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water;0.037530392145068!GO:0006778;porphyrin metabolic process;0.037530392145068!GO:0033013;tetrapyrrole metabolic process;0.037530392145068!GO:0030522;intracellular receptor-mediated signaling pathway;0.0376569396160577!GO:0030433;ER-associated protein catabolic process;0.0386138470278142!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0386138470278142!GO:0009116;nucleoside metabolic process;0.0386955311202628!GO:0050662;coenzyme binding;0.0386955311202628!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0390076476376043!GO:0043433;negative regulation of transcription factor activity;0.0401033232071493!GO:0000792;heterochromatin;0.0404721663685115!GO:0031628;opioid receptor binding;0.040534131614736!GO:0031852;mu-type opioid receptor binding;0.040534131614736!GO:0032153;cell division site;0.0405953841337502!GO:0032155;cell division site part;0.0405953841337502!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0406113254813558!GO:0008286;insulin receptor signaling pathway;0.0424073865754473!GO:0007050;cell cycle arrest;0.0424073865754473!GO:0000790;nuclear chromatin;0.0424073865754473!GO:0006807;nitrogen compound metabolic process;0.0424073865754473!GO:0006355;regulation of transcription, DNA-dependent;0.0424073865754473!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0424322465711338!GO:0003988;acetyl-CoA C-acyltransferase activity;0.043559287718468!GO:0046488;phosphatidylinositol metabolic process;0.0443040297093574!GO:0008553;hydrogen-exporting ATPase activity, phosphorylative mechanism;0.0444520570124124!GO:0000097;sulfur amino acid biosynthetic process;0.0447278514015051!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0447988803979333!GO:0016481;negative regulation of transcription;0.0450515241370592!GO:0051053;negative regulation of DNA metabolic process;0.0450515241370592!GO:0004003;ATP-dependent DNA helicase activity;0.0450840304830764!GO:0005777;peroxisome;0.0451974695950607!GO:0042579;microbody;0.0451974695950607!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0458690606950868!GO:0031301;integral to organelle membrane;0.0458724977494841!GO:0006897;endocytosis;0.0459423260543221!GO:0010324;membrane invagination;0.0459423260543221!GO:0040029;regulation of gene expression, epigenetic;0.0465317375738781!GO:0006220;pyrimidine nucleotide metabolic process;0.0465372592016606!GO:0048037;cofactor binding;0.0467101423979667!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0467101423979667!GO:0008213;protein amino acid alkylation;0.0468840027266198!GO:0006479;protein amino acid methylation;0.0468840027266198!GO:0006354;RNA elongation;0.0471036620006747!GO:0008537;proteasome activator complex;0.0471036620006747!GO:0003923;GPI-anchor transamidase activity;0.0472185200372373!GO:0016255;attachment of GPI anchor to protein;0.0472185200372373!GO:0042765;GPI-anchor transamidase complex;0.0472185200372373!GO:0031272;regulation of pseudopodium formation;0.047521529926812!GO:0031269;pseudopodium formation;0.047521529926812!GO:0031344;regulation of cell projection organization and biogenesis;0.047521529926812!GO:0031268;pseudopodium organization and biogenesis;0.047521529926812!GO:0031346;positive regulation of cell projection organization and biogenesis;0.047521529926812!GO:0031274;positive regulation of pseudopodium formation;0.047521529926812!GO:0051101;regulation of DNA binding;0.0482598911217325!GO:0032200;telomere organization and biogenesis;0.0485832728984835!GO:0000723;telomere maintenance;0.0485832728984835!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0487662309667638!GO:0043596;nuclear replication fork;0.0490527884325773!GO:0006914;autophagy;0.0494405668550191!GO:0019238;cyclohydrolase activity;0.0494552423219305!GO:0030125;clathrin vesicle coat;0.0495276461152517!GO:0030665;clathrin coated vesicle membrane;0.0495276461152517!GO:0003725;double-stranded RNA binding;0.0496508559546131!GO:0046519;sphingoid metabolic process;0.0497856998674854!GO:0000725;recombinational repair;0.0499798807556222!GO:0000724;double-strand break repair via homologous recombination;0.0499798807556222
|sample_id=10785
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=stomach
|top_motifs=SNAI1..3:2.12356086323;HOXA9_MEIS1:1.50492768912;FOXQ1:1.41918692481;HIF1A:1.41773492287;bHLH_family:1.36050206119;ZEB1:1.25048797691;PAX1,9:1.21391252199;TEAD1:1.20681677217;HOX{A6,A7,B6,B7}:1.14773576013;TEF:1.14329829061;PITX1..3:1.04936584374;FOXD3:1.04258203924;VSX1,2:1.02521717827;TOPORS:1.02373023464;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.0020406933;ZNF384:0.954711479757;NFY{A,B,C}:0.942877793138;IKZF2:0.934678215608;AIRE:0.858099580874;ZNF143:0.849161135142;MYOD1:0.822182646151;LHX3,4:0.801562909477;LMO2:0.797782862468;FOXP1:0.794385593438;ESRRA:0.782912774744;FOXL1:0.754568035495;XCPE1{core}:0.732642393427;ELK1,4_GABP{A,B1}:0.731973572525;POU1F1:0.723711671665;NKX2-1,4:0.664359031353;OCT4_SOX2{dimer}:0.624917708489;CDC5L:0.560487251502;CREB1:0.554969121967;CRX:0.549227247564;SP1:0.533734782412;GATA6:0.53097072976;GFI1:0.50094644853;PBX1:0.491997017977;E2F1..5:0.449489714794;NRF1:0.440257712323;PATZ1:0.390507598958;MYB:0.315930981471;SREBF1,2:0.313213125092;NR1H4:0.308891820278;POU2F1..3:0.307236261929;CDX1,2,4:0.295976366399;PRRX1,2:0.294735436263;STAT5{A,B}:0.281801205236;FOXM1:0.264418384151;IKZF1:0.243994433417;HNF4A_NR2F1,2:0.236168189538;MYBL2:0.235637795443;FOX{F1,F2,J1}:0.234460724379;EVI1:0.215521194397;ONECUT1,2:0.214865524179;ALX1:0.212905081068;YY1:0.190475631196;HLF:0.180804692354;NKX3-2:0.169663931154;ATF4:0.168429887185;HOX{A5,B5}:0.150940246622;FOXA2:0.145704392885;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.138630534898;ALX4:0.132195373425;ZIC1..3:0.127950589254;RORA:0.121173379974;FOXN1:0.0885639945085;RBPJ:0.0410062753935;ZNF148:0.0355854274357;ATF2:0.0341264798123;POU3F1..4:0.0288098608876;BREu{core}:0.0090073956732;CUX2:-0.0187072536954;FOXO1,3,4:-0.0224944440171;SOX{8,9,10}:-0.030878345845;TBX4,5:-0.0711007078398;ESR1:-0.0782618950542;HNF1A:-0.0916080003839;GCM1,2:-0.0965026525043;PDX1:-0.118793156401;HES1:-0.119198676084;PAX2:-0.143259069027;KLF4:-0.150706598718;UFEwm:-0.17043718443;FOX{D1,D2}:-0.200040296752;SOX17:-0.202617130673;ZBTB16:-0.230068249743;ZBTB6:-0.234917464473;EBF1:-0.23520578165;PAX4:-0.242952898014;CEBPA,B_DDIT3:-0.255282044953;HMGA1,2:-0.274956632321;NKX2-3_NKX2-5:-0.279038212503;ZFP161:-0.286700349846;PAX3,7:-0.301076626365;FOX{I1,J2}:-0.306196510659;RFX2..5_RFXANK_RFXAP:-0.312890485718;EN1,2:-0.327260616585;SPZ1:-0.330051238193;DMAP1_NCOR{1,2}_SMARC:-0.342258524828;GATA4:-0.353048379498;NKX6-1,2:-0.370016613153;NFE2:-0.38683110628;NR5A1,2:-0.39040108967;ADNP_IRX_SIX_ZHX:-0.405492634634;FOS_FOS{B,L1}_JUN{B,D}:-0.419834229036;NFIX:-0.424612193604;TFAP2{A,C}:-0.427446696195;MEF2{A,B,C,D}:-0.447900865196;AHR_ARNT_ARNT2:-0.453178577277;RXRA_VDR{dimer}:-0.453900763908;MED-1{core}:-0.453961799751;ARID5B:-0.457337416935;STAT1,3:-0.463527092156;ATF5_CREB3:-0.464884137822;REST:-0.503484624609;XBP1:-0.506199795616;NFE2L2:-0.507615429792;NFKB1_REL_RELA:-0.51312067471;BACH2:-0.517126050191;FOXP3:-0.524707634044;TFAP4:-0.562719485994;STAT2,4,6:-0.572198372644;TFAP2B:-0.574771937385;MTF1:-0.582036219158;NANOG:-0.590858977664;NKX3-1:-0.592517759607;MAZ:-0.593597711883;GTF2I:-0.616649878406;FOSL2:-0.61892846071;ATF6:-0.630630588817;PAX8:-0.634416925987;PAX5:-0.640062950929;SPIB:-0.643895312397;IRF7:-0.657202198872;SOX5:-0.671479961563;POU6F1:-0.685063667009;SOX2:-0.685639576856;ZNF423:-0.68579619729;GFI1B:-0.699183979989;SPI1:-0.709142150873;POU5F1:-0.737456315603;HOX{A4,D4}:-0.738238070467;GZF1:-0.739566283182;ELF1,2,4:-0.765467701804;TAL1_TCF{3,4,12}:-0.781872204073;RREB1:-0.795602130627;TP53:-0.81267378943;DBP:-0.814676180977;PPARG:-0.827456100039;TBP:-0.827987809247;RFX1:-0.834726256682;ETS1,2:-0.837526415406;RXR{A,B,G}:-0.843309986323;TGIF1:-0.844039512773;JUN:-0.852990367585;TLX1..3_NFIC{dimer}:-0.853349307977;PAX6:-0.859997400695;TFDP1:-0.870347742007;RUNX1..3:-0.880151100691;MAFB:-0.88833584465;NFE2L1:-0.89785612499;SRF:-0.94101670347;ZNF238:-0.941898791316;LEF1_TCF7_TCF7L1,2:-0.963464244708;TLX2:-0.974634575465;GTF2A1,2:-0.990360500013;HBP1_HMGB_SSRP1_UBTF:-0.99616448836;NANOG{mouse}:-0.998553734854;NFIL3:-1.0040772511;MZF1:-1.016388657;MYFfamily:-1.034383619;HIC1:-1.03919579962;PRDM1:-1.0431909541;GLI1..3:-1.06521589068;TFCP2:-1.08935653069;EGR1..3:-1.11211993305;IRF1,2:-1.1295347522;NR3C1:-1.18148869635;EP300:-1.19811352733;NKX2-2,8:-1.2099122914;MTE{core}:-1.24534883047;HMX1:-1.28308905892;HAND1,2:-1.45442441308;NR6A1:-1.5147873888;BPTF:-1.52717747944;NHLH1,2:-1.55789254212;AR:-1.60519897852;HSF1,2:-1.69583707765;NFATC1..3:-1.79449490432;T:-1.96100867398;SMAD1..7,9:-2.61351366219
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10785-110H2;search_select_hide=table117:FF:10785-110H2
}}
}}

Latest revision as of 15:04, 3 June 2020

Name:choriocarcinoma cell line:SCH
Species:Human (Homo sapiens)
Library ID:CNhs11875
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuestomach
dev stageNA
sexmale
age46
cell typetrophoblast cell
cell lineSCH
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005669
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11875 CAGE DRX007850 DRR008722
Accession ID Hg19

Library idBAMCTSS
CNhs11875 DRZ000147 DRZ001532
Accession ID Hg38

Library idBAMCTSS
CNhs11875 DRZ011497 DRZ012882
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.355
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.309
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.018
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0.157
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.069
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.177
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.126
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.105
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.157
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.501
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0797
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.164
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0.218
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.261
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0.246
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0.801
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11875

Jaspar motifP-value
MA0002.20.00211
MA0003.10.379
MA0004.10.135
MA0006.10.822
MA0007.10.769
MA0009.10.98
MA0014.10.136
MA0017.10.148
MA0018.20.477
MA0019.10.286
MA0024.10.0567
MA0025.10.985
MA0027.10.729
MA0028.10.0109
MA0029.10.14
MA0030.10.552
MA0031.10.376
MA0035.23.17013e-6
MA0038.10.0163
MA0039.23.78123e-4
MA0040.10.576
MA0041.10.181
MA0042.10.381
MA0043.10.453
MA0046.10.769
MA0047.20.646
MA0048.10.0711
MA0050.17.04488e-6
MA0051.15.88796e-4
MA0052.10.0246
MA0055.17.94296e-5
MA0057.10.448
MA0058.10.0809
MA0059.10.137
MA0060.11.45373e-7
MA0061.10.00589
MA0062.20.129
MA0065.26.05703e-4
MA0066.10.725
MA0067.10.279
MA0068.10.467
MA0069.10.503
MA0070.10.835
MA0071.10.259
MA0072.10.721
MA0073.10.971
MA0074.10.73
MA0076.10.0182
MA0077.10.569
MA0078.10.142
MA0079.20.965
MA0080.21.60847e-8
MA0081.10.00545
MA0083.14.06458e-4
MA0084.10.0469
MA0087.10.231
MA0088.10.0695
MA0090.12.62396e-5
MA0091.10.0211
MA0092.10.306
MA0093.10.125
MA0099.22.59725e-8
MA0100.10.798
MA0101.10.0195
MA0102.20.412
MA0103.14.93412e-6
MA0104.20.158
MA0105.10.172
MA0106.10.563
MA0107.14.7827e-4
MA0108.20.0179
MA0111.10.974
MA0112.20.759
MA0113.10.667
MA0114.17.64128e-4
MA0115.10.0872
MA0116.10.434
MA0117.10.935
MA0119.10.075
MA0122.10.605
MA0124.10.825
MA0125.10.924
MA0131.10.662
MA0135.10.37
MA0136.13.28667e-7
MA0137.20.24
MA0138.20.0922
MA0139.10.384
MA0140.10.00102
MA0141.10.635
MA0142.10.624
MA0143.10.288
MA0144.10.319
MA0145.10.771
MA0146.10.0719
MA0147.10.12
MA0148.10.982
MA0149.10.564
MA0150.10.165
MA0152.10.381
MA0153.10.219
MA0154.10.98
MA0155.10.983
MA0156.10.0041
MA0157.10.696
MA0159.10.592
MA0160.10.798
MA0162.10.526
MA0163.10.905
MA0164.10.359
MA0258.10.62
MA0259.10.065



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11875

Novel motifP-value
10.63
100.703
1000.181
1010.757
1020.65
1030.212
1040.193
1050.939
1060.231
1070.237
1080.856
1090.243
110.829
1100.159
1110.817
1120.486
1130.0322
1140.559
1150.347
1160.623
1170.0393
1180.229
1190.553
120.698
1200.951
1210.741
1220.565
1230.255
1240.103
1250.593
1260.463
1270.611
1280.18
1290.698
130.00197
1300.358
1310.298
1320.386
1330.00512
1340.878
1350.00564
1360.0149
1370.172
1380.588
1390.444
140.924
1400.599
1410.123
1420.459
1430.0466
1440.162
1450.902
1460.654
1470.0671
1480.0186
1490.717
150.796
1500.946
1510.241
1520.446
1530.94
1540.366
1550.993
1560.823
1570.775
1580.4
1590.349
160.882
1600.579
1610.693
1620.342
1630.54
1640.211
1650.295
1660.0314
1670.851
1680.156
1690.511
170.421
180.346
190.705
20.485
200.139
210.665
220.658
230.159
240.481
250.812
260.391
270.256
280.786
290.441
30.944
300.925
310.551
320.194
330.343
340.785
350.389
360.298
370.714
380.786
390.277
40.881
400.0338
410.0187
420.795
430.777
440.738
450.529
460.527
470.536
480.698
490.818
50.246
500.117
510.655
520.743
530.813
540.652
550.583
560.825
570.254
580.615
590.505
60.487
600.72
610.44
620.489
630.824
640.871
650.618
660.0138
670.957
680.339
690.633
70.152
700.665
710.381
720.715
730.528
740.0598
750.13
760.159
770.839
780.0109
790.233
80.201
800.13
810.305
820.735
830.633
840.293
850.0508
860.896
870.13
880.897
890.211
90.11
900.962
910.0754
920.19
930.342
940.864
950.0065
960.819
970.847
980.866
990.689



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11875


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000255 (eukaryotic cell)
0000039 (germ line cell)
0000586 (germ cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101575 (choriocarcinoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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