FF:10785-110H2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005669 | |||
|accession_numbers=CAGE;DRX007850;DRR008722;DRZ000147;DRZ001532;DRZ011497;DRZ012882 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000255,CL:0000039,CL:0000586 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:2994 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101575 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0101575 | |fonse_cell_line=FF:0101575 | ||
|fonse_cell_line_closure=FF:0101575 | |fonse_cell_line_closure=FF:0101575 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aSCH.CNhs11875.10785-110H2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aSCH.CNhs11875.10785-110H2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aSCH.CNhs11875.10785-110H2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aSCH.CNhs11875.10785-110H2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aSCH.CNhs11875.10785-110H2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10785-110H2 | |id=FF:10785-110H2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0101575 | ||
|is_obsolete= | |||
|library_id=CNhs11875 | |||
|library_id_phase_based=2:CNhs11875 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10785 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10785 | |||
|name=choriocarcinoma cell line:SCH | |name=choriocarcinoma cell line:SCH | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11875,LSID830,release010,COMPLETED | |profile_hcage=CNhs11875,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.503072917604057,0,0.50960637683455,0.0447934318288531,0,0.0576615774448518,0.0853957467812278,-0.120634488083477,0.0944583098360675,0,0,0,0.0447934318288531,0,0,0,0,0,0,0,0,0,0.14286514763018,0,0.265115361590159,0,0,0,0.520171169010566,0,0,0.0850230177523756,0,0,0,0,0,0,0,0,0,0,0,0,-0.0326570737873508,0.109090533449118,0,0,0,0,0,0,0,0.631625220946629,0,0,0,0,0,0,0,0.485619965459882,0,0,0.0593840168969398,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0836589985550946,0,0.122524565281336,0,0,0,-0.143834758454347,0,0,0,0.0982808172982116,-0.146102813390828,0,0,0,0,0.0903972364761883,0.147386317895765,0,0,0,0,0,0,0.156727644110037,0,0,0,0.172580115911966,0,0,0,0,0,0,0.79268582769378,0.156727644110037,0,0,-0.0626869302342458,-0.235063906080362,0,0,0.0853957467812278,0,0,0.0447934318288531 | |||
|repeat_enrich_byname=0,0,0,0,0.0903972364761883,0,0,0.122524565281336,0,0,0,0,0.122524565281336,0,0,0,0.0722340435155393,0.0223967159144265,0.217110721023552,0.218923686278689,0,0,-0.169236608801992,0.0447934318288531,0.188432587713895,0,0,0.0853957467812278,0,0.0447934318288531,0,0,-0.0833264351237116,0,0.0349831951919129,0,0,0,0,-0.0186252810838506,0.076979939598781,0,0.287571700916688,-0.0235508292485151,0,0,0,0,0.0247674916423407,0,0.0675531039201541,-0.0827201683234173,-0.221611588102807,-0.690236122963299,-0.0109190649523289,0,0,0,-0.415825697756461,0.122141381692763,0,0,-0.0993831358374475,-0.181349618560659,0,0,-0.391044581551635,0,0.0333947410210649,-0.0176990672067267,0,0.187971522358989,0,0,0,0,0,0.0447934318288531,0,0,0,0,0,0.275282422674414,0.0354502321231918,0.0906517146080538,0.122852808586951,0.382452170497188,0.0388673932708889,-0.0219163350573749,0,0.019773674894974,1.23117428011704,-0.147107411203525,-0.0126357656963055,-0.0119345046211567,0,0.080062443487275,-0.222601925256025,-0.241366507816925,-0.259944243458077,-0.147401849371139,0.0816691678626086,0,-0.453790966045087,-0.179662737558594,0.0232637679675793,0.181371179664331,0.00322886806882039,-0.115470043989405,-0.0762020681821292,0,0.594776840531859,0,0.724505759303015,0,0,-0.0702067610188023,0.267762810623001,-0.141253308622587,-0.0762896416313832,0.442812240461479,-0.224625585011119,0.0217297541839976,-0.457436452896595,0,-0.170840885983098,0,0.217979607531238,0.00782990912580675,0.0295311542065158,-0.241981873328571,-0.129494882566586,0,-0.0295891827195762,0.0170514857038596,0,-0.562569786769033,0.0480288644333118,0.122524565281336,0,0.0278326606840061,0,0,-0.266886725919249,0.0650945893050404,0,0.291982265190907,0.1007973002622,0.0387953258569111,0,-0.092713786123371,-0.00265365100688253,-0.100198354005691,0,-0.058157540715571,-0.0137381738969108,0.108749935201068,0.0898183659009523,0,0.262404998078728,0.191862286479411,0.0180420208659873,-0.377601373562884,0.0982808172982116,0.0232518070502873,-0.138283407773857,0.277543468541098,-0.351449647480347,0.217979607531238,-0.0881268324752877,0.0447934318288531,-0.276934858962962,-0.634704699792671,-0.0491137984461535,-0.34820320386106,0.0347197221746371,0.00383096735645294,0,0.218486348991621,0,-0.101975663535479,-0.054102460861147,-0.353893627799458,-0.0384266999177991,0,-0.153392738316496,0.369133173238543,0,-0.0825332683841836,-0.0088955713252675,0.96135240337926,-0.105573651505786,-0.296112232273148,-0.0145627015176931,0.347196970045426,0.0146419173134049,0.0860708185354147,0,0,0.0671363929448448,0.184431915693583,0,-0.0800864229387251,-0.267744431656085,-0.117884750583201,-0.115971073434934,0.0447934318288531,0,0.581222044510094,0,0.156727644110037,-0.309739905839423,-0.04393615455538,1.05890227566596,-0.253326341486756,-0.148534417796862,0.12141892810892,0,0,0.010904821748719,0,-0.53742968997449,0,0,-0.249881296598824,-0.116628112990133,0,0,0,0,0,0.0264392357958717,0,0,0.0291566515938316,0,0,0.292784449816168,-0.166400742502553,0.0447934318288531,-0.129182220524299,0,0,0,0,0.0447934318288531,-0.0071729633271328,0,0,0.373211575754587,-0.0195204865547121,-0.0376216688951925,0.0426978733906139,0,0,0,0.270607888058619,0.092951595883884,0,-0.0870692746687786,0,0,0,0,0.15950283574452,0,0,0.0223967159144265,0.227194139545702,-0.057730457053664,-0.0899410914794117,0,0,0,0.209376889010303,0,0,0,0,0.0081343646801062,0,0,-0.239058835594622,0,-0.186604867644436,-0.0367884477179883,0,-0.100215521969459,-0.735088408812193,0.253001875134559,0,0,0.0801113507674238,0,0,0.09421079512878,0,0.0853957467812278,0,0,0,0,0,0.0841213010697029,0,-0.214314512399756,0,0.0447934318288531,0,0,0,0.0447934318288531,0,0.0447934318288531,0,0,0,-0.283762182432658,-0.00682830987728261,0,0,0.0447934318288531,0,0,0,0,0.121112605602389,0.0968951163933575,0,0,0.082464715890289,0,0,0,0,0,0.39840369365058,0.172580115911966,0,0,0,0,0.485619965459882,0,0,0,0.0447934318288531,0.188916619672135,0.00755893948827513,0,-0.120634488083477,0,0.0447934318288531,0,0,0,0,0,0.0072349833986886,0,0,0,0,0,0.065113501678447,-0.498456257922271,0.96135240337926,0.0853957467812278,0,0,0,0.0853957467812278,0,-0.0291894726723591,0,0,0,0,-0.0690909418801241,1.0192127536691,0,0,0.257642444013004,0,0.0576615774448518,0.0447934318288531,0,0,0,0,0.245499075183724,0.0426978733906139,0.0223967159144265,0.0853957467812278,0,0,0.0223967159144265,0,0,0,0,0,0,0,0,0,0.53918534961452,-0.000487043614562296,-0.172545363419994,-0.0568589461625992,0,0,0.108112478839659,0,0,0,0,0,0,0.0113574493620869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156727644110037,0,0,0,0,0,0,-0.0124613278906618,0,0,0,0,0,0,0,0.520171169010566,0,0,0.125005396823287,0,0,0.0030721616521407,0.0447934318288531,0,0,-0.060782701111007,-0.0176580386026742,-0.196959768949304,0,0,0,-0.0319888565680284,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0.0836589985550946,0.151687677156233,0,0,0,0,0,0,0,0,0,0,1.72104767758586,0,0,0,0,0,0,0,0,0,0.14286514763018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=64.00695 | |rna_weight_ug=64.00695 | ||
|sample_age=46 | |sample_age=46 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb0251 | |sample_cell_catalog=jcrb0251 | ||
|sample_cell_line=SCH | |sample_cell_line=SCH | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.5056835617686e-262!GO:0043231;intracellular membrane-bound organelle;1.26472571371145e-224!GO:0043227;membrane-bound organelle;1.26472571371145e-224!GO:0043226;organelle;1.82035444313936e-222!GO:0043229;intracellular organelle;6.13668457399104e-222!GO:0005737;cytoplasm;1.19813097082044e-180!GO:0044422;organelle part;1.41226858883186e-151!GO:0044446;intracellular organelle part;5.33460507997207e-150!GO:0044444;cytoplasmic part;1.02273846013678e-133!GO:0044238;primary metabolic process;5.33254516427421e-100!GO:0044237;cellular metabolic process;2.11110482767699e-99!GO:0005634;nucleus;8.77080940859892e-98!GO:0032991;macromolecular complex;1.10003372147394e-93!GO:0030529;ribonucleoprotein complex;1.52785141103286e-89!GO:0043170;macromolecule metabolic process;1.21950204096333e-87!GO:0003723;RNA binding;1.8637687045289e-79!GO:0044428;nuclear part;1.63634393037422e-78!GO:0043233;organelle lumen;1.91717134934204e-77!GO:0031974;membrane-enclosed lumen;1.91717134934204e-77!GO:0005739;mitochondrion;3.25570678836174e-71!GO:0005515;protein binding;5.05424191218298e-59!GO:0031090;organelle membrane;5.97215204396937e-55!GO:0005840;ribosome;1.13039208657985e-53!GO:0006412;translation;7.6234165575281e-53!GO:0006396;RNA processing;1.59189122335807e-52!GO:0043283;biopolymer metabolic process;6.32242974926139e-52!GO:0010467;gene expression;2.30211694275411e-51!GO:0009058;biosynthetic process;6.54266609249802e-48!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.57015567127231e-47!GO:0031981;nuclear lumen;7.60291999151211e-47!GO:0015031;protein transport;2.0406095210299e-46!GO:0044429;mitochondrial part;2.5352158346582e-46!GO:0003735;structural constituent of ribosome;3.26515924001817e-46!GO:0033036;macromolecule localization;3.97630934141551e-46!GO:0016043;cellular component organization and biogenesis;4.45943448654923e-45!GO:0043234;protein complex;1.07282605058496e-44!GO:0019538;protein metabolic process;3.27776881766711e-44!GO:0008104;protein localization;1.68995835672671e-42!GO:0031967;organelle envelope;2.16428089771821e-42!GO:0045184;establishment of protein localization;3.59014707565317e-42!GO:0031975;envelope;4.21189915763287e-42!GO:0044249;cellular biosynthetic process;1.3357371045224e-41!GO:0009059;macromolecule biosynthetic process;1.81467951627974e-41!GO:0016071;mRNA metabolic process;3.84258809980124e-41!GO:0033279;ribosomal subunit;8.50779391086729e-41!GO:0044260;cellular macromolecule metabolic process;8.96190522762404e-39!GO:0044267;cellular protein metabolic process;1.02834696822508e-38!GO:0008380;RNA splicing;1.10182374250622e-37!GO:0006397;mRNA processing;1.91199622162511e-35!GO:0065003;macromolecular complex assembly;3.10817681508618e-35!GO:0043228;non-membrane-bound organelle;1.00084231671107e-34!GO:0043232;intracellular non-membrane-bound organelle;1.00084231671107e-34!GO:0003676;nucleic acid binding;1.99992497554178e-34!GO:0046907;intracellular transport;7.23026826704197e-34!GO:0006996;organelle organization and biogenesis;1.97489639394164e-33!GO:0022607;cellular component assembly;3.62798948831372e-33!GO:0005829;cytosol;4.1242330452359e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.31383069648202e-33!GO:0019866;organelle inner membrane;2.6429626408779e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.93525242206227e-29!GO:0005740;mitochondrial envelope;2.8626133813603e-29!GO:0006886;intracellular protein transport;1.32582991943363e-28!GO:0005654;nucleoplasm;4.80735119525105e-28!GO:0005743;mitochondrial inner membrane;7.42052312611032e-28!GO:0031966;mitochondrial membrane;9.27710809286238e-28!GO:0005681;spliceosome;1.03665687410644e-27!GO:0007049;cell cycle;5.05939822707951e-26!GO:0006259;DNA metabolic process;6.33869680605628e-26!GO:0016070;RNA metabolic process;1.5370643586073e-25!GO:0006119;oxidative phosphorylation;1.53732439448342e-23!GO:0000166;nucleotide binding;2.26819622225224e-23!GO:0044445;cytosolic part;4.21923525411712e-23!GO:0044451;nucleoplasm part;1.01929955127491e-22!GO:0012505;endomembrane system;2.22839272278405e-22!GO:0051649;establishment of cellular localization;2.285035590072e-22!GO:0051641;cellular localization;3.42607589389104e-22!GO:0016874;ligase activity;7.89366049800562e-22!GO:0044455;mitochondrial membrane part;1.65562024231237e-21!GO:0015935;small ribosomal subunit;2.26420236750325e-21!GO:0022618;protein-RNA complex assembly;7.05027604244497e-21!GO:0031980;mitochondrial lumen;1.68578470564453e-20!GO:0005759;mitochondrial matrix;1.68578470564453e-20!GO:0015934;large ribosomal subunit;1.915779230672e-20!GO:0044265;cellular macromolecule catabolic process;6.30100958844157e-20!GO:0022402;cell cycle process;1.09450952966348e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;4.48381792794664e-19!GO:0006511;ubiquitin-dependent protein catabolic process;6.21984433582737e-19!GO:0005730;nucleolus;6.60221119108527e-19!GO:0019941;modification-dependent protein catabolic process;7.41191937200389e-19!GO:0043632;modification-dependent macromolecule catabolic process;7.41191937200389e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;8.19792827169766e-19!GO:0044257;cellular protein catabolic process;1.48166475407358e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.67480782384364e-18!GO:0016462;pyrophosphatase activity;1.69320957896848e-18!GO:0006512;ubiquitin cycle;3.24738778888231e-18!GO:0005783;endoplasmic reticulum;9.54947477766591e-18!GO:0043285;biopolymer catabolic process;1.85681198840896e-17!GO:0017111;nucleoside-triphosphatase activity;2.03316312847138e-17!GO:0006457;protein folding;2.05347351187586e-17!GO:0000278;mitotic cell cycle;2.26876265253249e-17!GO:0048770;pigment granule;4.82979421853492e-17!GO:0042470;melanosome;4.82979421853492e-17!GO:0044432;endoplasmic reticulum part;5.55929315565971e-17!GO:0005694;chromosome;7.22920222196567e-17!GO:0008134;transcription factor binding;7.23144879714496e-17!GO:0032553;ribonucleotide binding;1.02341756705685e-16!GO:0032555;purine ribonucleotide binding;1.02341756705685e-16!GO:0044248;cellular catabolic process;1.11840631646589e-16!GO:0009057;macromolecule catabolic process;1.61992831484002e-16!GO:0051186;cofactor metabolic process;1.73260796323658e-16!GO:0005794;Golgi apparatus;2.36581574991692e-16!GO:0000502;proteasome complex (sensu Eukaryota);2.63963057689917e-16!GO:0005761;mitochondrial ribosome;2.78227772674902e-16!GO:0000313;organellar ribosome;2.78227772674902e-16!GO:0008135;translation factor activity, nucleic acid binding;6.46611903715472e-16!GO:0017076;purine nucleotide binding;8.2288204966716e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.74953151276707e-16!GO:0030163;protein catabolic process;9.9564185614313e-16!GO:0022403;cell cycle phase;1.72508171585418e-15!GO:0005746;mitochondrial respiratory chain;2.73233654814096e-15!GO:0006974;response to DNA damage stimulus;3.02159148864953e-15!GO:0051301;cell division;4.79966325994439e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.14232153473667e-15!GO:0006605;protein targeting;7.01263603325873e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;9.00475809448246e-15!GO:0000375;RNA splicing, via transesterification reactions;9.00475809448246e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.00475809448246e-15!GO:0005524;ATP binding;9.4477389048253e-15!GO:0044427;chromosomal part;1.29068718679997e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.04015746873998e-14!GO:0003954;NADH dehydrogenase activity;2.04015746873998e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.04015746873998e-14!GO:0051276;chromosome organization and biogenesis;2.58247477063727e-14!GO:0032559;adenyl ribonucleotide binding;4.46112115432027e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.1078820852481e-14!GO:0005635;nuclear envelope;1.01728442898868e-13!GO:0006281;DNA repair;1.01865730895713e-13!GO:0006732;coenzyme metabolic process;1.73217617830383e-13!GO:0006413;translational initiation;1.80038205416742e-13!GO:0000087;M phase of mitotic cell cycle;1.82074978790506e-13!GO:0007067;mitosis;2.08672892510737e-13!GO:0031965;nuclear membrane;2.3418489051352e-13!GO:0048193;Golgi vesicle transport;2.38390873389746e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.99987845576491e-13!GO:0005789;endoplasmic reticulum membrane;4.05997867591866e-13!GO:0016604;nuclear body;4.11006214568887e-13!GO:0016887;ATPase activity;4.93735106052541e-13!GO:0051082;unfolded protein binding;5.02418607393871e-13!GO:0042775;organelle ATP synthesis coupled electron transport;5.02418607393871e-13!GO:0042773;ATP synthesis coupled electron transport;5.02418607393871e-13!GO:0030554;adenyl nucleotide binding;5.17680445344207e-13!GO:0042254;ribosome biogenesis and assembly;7.28081801890941e-13!GO:0042623;ATPase activity, coupled;8.17754122516683e-13!GO:0003743;translation initiation factor activity;8.29408233723335e-13!GO:0006446;regulation of translational initiation;8.91921035232457e-13!GO:0000279;M phase;1.06973103010628e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.51363038251767e-12!GO:0045271;respiratory chain complex I;1.51363038251767e-12!GO:0005747;mitochondrial respiratory chain complex I;1.51363038251767e-12!GO:0044453;nuclear membrane part;2.07766234900938e-12!GO:0006399;tRNA metabolic process;2.43533060059014e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.12417928485833e-12!GO:0016192;vesicle-mediated transport;6.10043149885634e-12!GO:0043412;biopolymer modification;6.15484536207496e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.023890716474e-11!GO:0008565;protein transporter activity;1.44125508911606e-11!GO:0016607;nuclear speck;4.07386531034569e-11!GO:0004386;helicase activity;4.59163491497365e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;5.89968600923964e-11!GO:0005643;nuclear pore;6.54969227852568e-11!GO:0003712;transcription cofactor activity;8.03005909358191e-11!GO:0006461;protein complex assembly;9.7002489105231e-11!GO:0009259;ribonucleotide metabolic process;1.01852569421799e-10!GO:0009719;response to endogenous stimulus;1.04745387209503e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.41498808904496e-10!GO:0006323;DNA packaging;2.28262684399007e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.74817111017275e-10!GO:0065002;intracellular protein transport across a membrane;2.76859451767658e-10!GO:0006260;DNA replication;3.22029271579103e-10!GO:0051188;cofactor biosynthetic process;3.27478496494761e-10!GO:0006163;purine nucleotide metabolic process;3.48427222578795e-10!GO:0006464;protein modification process;3.75475735068139e-10!GO:0009056;catabolic process;5.33134688215901e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.43398812959853e-10!GO:0004812;aminoacyl-tRNA ligase activity;5.43398812959853e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.43398812959853e-10!GO:0015986;ATP synthesis coupled proton transport;7.03594276830271e-10!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.03594276830271e-10!GO:0008639;small protein conjugating enzyme activity;7.31061127996164e-10!GO:0050657;nucleic acid transport;8.43682695225867e-10!GO:0051236;establishment of RNA localization;8.43682695225867e-10!GO:0050658;RNA transport;8.43682695225867e-10!GO:0006164;purine nucleotide biosynthetic process;9.22575015355167e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.02387679193005e-09!GO:0004842;ubiquitin-protein ligase activity;1.16986537784024e-09!GO:0009150;purine ribonucleotide metabolic process;1.1759952878705e-09!GO:0006366;transcription from RNA polymerase II promoter;1.1759952878705e-09!GO:0009260;ribonucleotide biosynthetic process;1.19223498855462e-09!GO:0006403;RNA localization;1.45348963306565e-09!GO:0019787;small conjugating protein ligase activity;1.60939701791286e-09!GO:0043038;amino acid activation;1.63990670426644e-09!GO:0006418;tRNA aminoacylation for protein translation;1.63990670426644e-09!GO:0043039;tRNA aminoacylation;1.63990670426644e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.36089387090046e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.36089387090046e-09!GO:0006913;nucleocytoplasmic transport;2.4061138222133e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.04971265799399e-09!GO:0008026;ATP-dependent helicase activity;3.18320120951408e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.66534233125038e-09!GO:0000074;regulation of progression through cell cycle;3.86619099629581e-09!GO:0009141;nucleoside triphosphate metabolic process;4.03573750815592e-09!GO:0046930;pore complex;4.28380428727471e-09!GO:0016469;proton-transporting two-sector ATPase complex;4.80244498165389e-09!GO:0051726;regulation of cell cycle;4.86775955680385e-09!GO:0051169;nuclear transport;5.0485444203056e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.28471751248808e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.28471751248808e-09!GO:0019829;cation-transporting ATPase activity;7.65847544277422e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.05690891603651e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.05690891603651e-08!GO:0043687;post-translational protein modification;1.24869449690757e-08!GO:0009055;electron carrier activity;1.28217594166207e-08!GO:0005768;endosome;1.3949276180322e-08!GO:0006752;group transfer coenzyme metabolic process;1.41722481210154e-08!GO:0006754;ATP biosynthetic process;1.5092098078642e-08!GO:0006753;nucleoside phosphate metabolic process;1.5092098078642e-08!GO:0009108;coenzyme biosynthetic process;1.72665742371355e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.78545058589186e-08!GO:0005793;ER-Golgi intermediate compartment;2.10465765224017e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.23134024500828e-08!GO:0048475;coated membrane;2.43549503624877e-08!GO:0030117;membrane coat;2.43549503624877e-08!GO:0016072;rRNA metabolic process;2.91361991107926e-08!GO:0006364;rRNA processing;2.96100802042475e-08!GO:0046034;ATP metabolic process;3.45316239565673e-08!GO:0051028;mRNA transport;3.68247772247313e-08!GO:0065004;protein-DNA complex assembly;4.42785244455012e-08!GO:0000785;chromatin;5.24438014146803e-08!GO:0017038;protein import;5.52153416506394e-08!GO:0016740;transferase activity;5.6604025690858e-08!GO:0030532;small nuclear ribonucleoprotein complex;8.33036636664294e-08!GO:0016881;acid-amino acid ligase activity;1.12784904851563e-07!GO:0009060;aerobic respiration;1.50739330807286e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.6107447168278e-07!GO:0016568;chromatin modification;2.7057758849255e-07!GO:0043623;cellular protein complex assembly;3.65719635122186e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.81819694274951e-07!GO:0003713;transcription coactivator activity;4.71091383783332e-07!GO:0043566;structure-specific DNA binding;5.35987795247748e-07!GO:0045259;proton-transporting ATP synthase complex;5.83113628403552e-07!GO:0006333;chromatin assembly or disassembly;6.76420184908784e-07!GO:0045333;cellular respiration;7.23229102627218e-07!GO:0003697;single-stranded DNA binding;7.36277530193337e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.77602474751559e-07!GO:0044431;Golgi apparatus part;1.01820174305543e-06!GO:0005667;transcription factor complex;1.17349789183672e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.18984746938535e-06!GO:0000245;spliceosome assembly;1.28796902388544e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.3344629852474e-06!GO:0051329;interphase of mitotic cell cycle;1.89875129910429e-06!GO:0006099;tricarboxylic acid cycle;1.90585511277497e-06!GO:0046356;acetyl-CoA catabolic process;1.90585511277497e-06!GO:0008654;phospholipid biosynthetic process;2.08828313241806e-06!GO:0032446;protein modification by small protein conjugation;2.23979303147509e-06!GO:0051427;hormone receptor binding;2.24518941045629e-06!GO:0006084;acetyl-CoA metabolic process;2.29049753857373e-06!GO:0030120;vesicle coat;2.29828533295927e-06!GO:0030662;coated vesicle membrane;2.29828533295927e-06!GO:0016779;nucleotidyltransferase activity;2.43244127583063e-06!GO:0019222;regulation of metabolic process;2.43244127583063e-06!GO:0007005;mitochondrion organization and biogenesis;2.58858974692299e-06!GO:0016567;protein ubiquitination;3.15393589120165e-06!GO:0051325;interphase;3.51968427593645e-06!GO:0016853;isomerase activity;3.5554682788153e-06!GO:0015630;microtubule cytoskeleton;4.06115594456495e-06!GO:0005773;vacuole;4.15045465077936e-06!GO:0004298;threonine endopeptidase activity;4.21198344047565e-06!GO:0009109;coenzyme catabolic process;4.68469245324604e-06!GO:0035257;nuclear hormone receptor binding;5.13274410021888e-06!GO:0006613;cotranslational protein targeting to membrane;5.75233401831854e-06!GO:0051246;regulation of protein metabolic process;6.15829104095089e-06!GO:0005762;mitochondrial large ribosomal subunit;6.22449367011304e-06!GO:0000315;organellar large ribosomal subunit;6.22449367011304e-06!GO:0050794;regulation of cellular process;7.53598693284585e-06!GO:0016787;hydrolase activity;9.21937230596529e-06!GO:0031982;vesicle;9.59807537577078e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.04216819446297e-05!GO:0051187;cofactor catabolic process;1.04301042608051e-05!GO:0000775;chromosome, pericentric region;1.06848322197251e-05!GO:0009117;nucleotide metabolic process;1.14652939529636e-05!GO:0003724;RNA helicase activity;1.21146295197399e-05!GO:0007051;spindle organization and biogenesis;1.23703835735524e-05!GO:0005819;spindle;1.27634454010113e-05!GO:0006818;hydrogen transport;1.34016523518243e-05!GO:0031410;cytoplasmic vesicle;1.60948619974913e-05!GO:0016563;transcription activator activity;1.6505046501363e-05!GO:0015992;proton transport;1.84605787084502e-05!GO:0000151;ubiquitin ligase complex;2.24101370416314e-05!GO:0006261;DNA-dependent DNA replication;2.31971466763921e-05!GO:0003899;DNA-directed RNA polymerase activity;2.46337983894585e-05!GO:0048471;perinuclear region of cytoplasm;2.53721979817606e-05!GO:0031988;membrane-bound vesicle;2.58488956906715e-05!GO:0005788;endoplasmic reticulum lumen;2.99955925414158e-05!GO:0005770;late endosome;3.27828746099149e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.63353254992618e-05!GO:0043021;ribonucleoprotein binding;3.69313548379035e-05!GO:0005813;centrosome;3.73797584279522e-05!GO:0044440;endosomal part;3.97770017117141e-05!GO:0010008;endosome membrane;3.97770017117141e-05!GO:0008610;lipid biosynthetic process;4.13073960208736e-05!GO:0012501;programmed cell death;4.58757788953291e-05!GO:0006915;apoptosis;4.78367872448533e-05!GO:0031252;leading edge;4.95008607971551e-05!GO:0000139;Golgi membrane;5.06406295241006e-05!GO:0051170;nuclear import;5.39396752483299e-05!GO:0005525;GTP binding;5.67337100802521e-05!GO:0006334;nucleosome assembly;6.56906118060744e-05!GO:0006793;phosphorus metabolic process;6.60412537098003e-05!GO:0006796;phosphate metabolic process;6.60412537098003e-05!GO:0000314;organellar small ribosomal subunit;7.03588147316882e-05!GO:0005763;mitochondrial small ribosomal subunit;7.03588147316882e-05!GO:0005815;microtubule organizing center;8.13125949173016e-05!GO:0016310;phosphorylation;8.14780374096148e-05!GO:0031323;regulation of cellular metabolic process;8.86052565542565e-05!GO:0031497;chromatin assembly;9.52101729150042e-05!GO:0006350;transcription;0.000111948543485466!GO:0000323;lytic vacuole;0.000125898674466517!GO:0005764;lysosome;0.000125898674466517!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000128397931345308!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000133905625611108!GO:0006606;protein import into nucleus;0.000153877203143781!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000154555633096763!GO:0045786;negative regulation of progression through cell cycle;0.000154555633096763!GO:0046474;glycerophospholipid biosynthetic process;0.000163218428376066!GO:0005048;signal sequence binding;0.000164419526066952!GO:0008033;tRNA processing;0.000176808787435643!GO:0030867;rough endoplasmic reticulum membrane;0.000177649007876667!GO:0006839;mitochondrial transport;0.000179621049059789!GO:0008186;RNA-dependent ATPase activity;0.000183851148177067!GO:0019752;carboxylic acid metabolic process;0.000214366372070382!GO:0005769;early endosome;0.000217779009006301!GO:0006402;mRNA catabolic process;0.000234221934656254!GO:0006082;organic acid metabolic process;0.000237532792997909!GO:0007264;small GTPase mediated signal transduction;0.000238469419659369!GO:0043681;protein import into mitochondrion;0.000240396841144882!GO:0005798;Golgi-associated vesicle;0.000243975196138232!GO:0003690;double-stranded DNA binding;0.000244802476223603!GO:0008219;cell death;0.000247009437541218!GO:0016265;death;0.000247009437541218!GO:0016126;sterol biosynthetic process;0.000251045519799233!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000251661558989594!GO:0008094;DNA-dependent ATPase activity;0.000261861355161318!GO:0051168;nuclear export;0.000272059553289282!GO:0046467;membrane lipid biosynthetic process;0.00027749833713929!GO:0006612;protein targeting to membrane;0.000308729927176098!GO:0005905;coated pit;0.000325662597862578!GO:0003682;chromatin binding;0.000346027724408303!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000361426774952765!GO:0015399;primary active transmembrane transporter activity;0.000361426774952765!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000367241174548987!GO:0006916;anti-apoptosis;0.000389985770315611!GO:0006626;protein targeting to mitochondrion;0.000392168344264892!GO:0016044;membrane organization and biogenesis;0.000416540473446803!GO:0016741;transferase activity, transferring one-carbon groups;0.000425199216341665!GO:0022890;inorganic cation transmembrane transporter activity;0.000425242802765273!GO:0005791;rough endoplasmic reticulum;0.000437658062187763!GO:0000049;tRNA binding;0.00052267053336343!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000524678828488393!GO:0006401;RNA catabolic process;0.000529656441949934!GO:0010468;regulation of gene expression;0.000533538594543504!GO:0015980;energy derivation by oxidation of organic compounds;0.000538815103589763!GO:0004004;ATP-dependent RNA helicase activity;0.000552009573329044!GO:0006520;amino acid metabolic process;0.000570697768485502!GO:0051789;response to protein stimulus;0.00057264146008354!GO:0006986;response to unfolded protein;0.00057264146008354!GO:0007059;chromosome segregation;0.000576074100764365!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000602843366968008!GO:0005657;replication fork;0.000632898485055988!GO:0008168;methyltransferase activity;0.000651644061506835!GO:0032561;guanyl ribonucleotide binding;0.000651644061506835!GO:0019001;guanyl nucleotide binding;0.000651644061506835!GO:0030118;clathrin coat;0.000661753781123293!GO:0004576;oligosaccharyl transferase activity;0.00069118484948143!GO:0035258;steroid hormone receptor binding;0.000692014908607838!GO:0006414;translational elongation;0.000749398700438701!GO:0051920;peroxiredoxin activity;0.000755753026605677!GO:0000776;kinetochore;0.000755753026605677!GO:0007010;cytoskeleton organization and biogenesis;0.000756969236368213!GO:0005684;U2-dependent spliceosome;0.000775101376195803!GO:0019843;rRNA binding;0.000782695944914941!GO:0019899;enzyme binding;0.000782695944914941!GO:0016363;nuclear matrix;0.000847457961149178!GO:0006650;glycerophospholipid metabolic process;0.000847457961149178!GO:0000075;cell cycle checkpoint;0.000904314437203633!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000922286828570347!GO:0008250;oligosaccharyl transferase complex;0.000925871577171279!GO:0015631;tubulin binding;0.000930798488455553!GO:0043069;negative regulation of programmed cell death;0.000960290623083196!GO:0048487;beta-tubulin binding;0.000985328764480377!GO:0048500;signal recognition particle;0.00102135187540798!GO:0005885;Arp2/3 protein complex;0.00102135187540798!GO:0006352;transcription initiation;0.00103980701065255!GO:0046489;phosphoinositide biosynthetic process;0.00104812057161043!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00106052274645763!GO:0043066;negative regulation of apoptosis;0.00107356222089814!GO:0030119;AP-type membrane coat adaptor complex;0.0011219841365104!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00118620277451164!GO:0016491;oxidoreductase activity;0.0011892159057661!GO:0045454;cell redox homeostasis;0.0012235322064258!GO:0016859;cis-trans isomerase activity;0.0012331145898944!GO:0003924;GTPase activity;0.00123744335565898!GO:0030384;phosphoinositide metabolic process;0.0012434165715943!GO:0042802;identical protein binding;0.00128143133313353!GO:0031072;heat shock protein binding;0.00137379087162274!GO:0044452;nucleolar part;0.00138057095060635!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00149141546646827!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00149141546646827!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00152066646503879!GO:0005758;mitochondrial intermembrane space;0.00153836232750645!GO:0016251;general RNA polymerase II transcription factor activity;0.00157276021189672!GO:0005637;nuclear inner membrane;0.00169907148323402!GO:0003714;transcription corepressor activity;0.00175898291080654!GO:0003729;mRNA binding;0.00182695596039284!GO:0007052;mitotic spindle organization and biogenesis;0.00182996210524679!GO:0006091;generation of precursor metabolites and energy;0.00184492559599155!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00185120340981748!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00185120340981748!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00185120340981748!GO:0033116;ER-Golgi intermediate compartment membrane;0.00186859819592708!GO:0009165;nucleotide biosynthetic process;0.00188764984186707!GO:0000059;protein import into nucleus, docking;0.00190592306035436!GO:0030131;clathrin adaptor complex;0.00192544199389544!GO:0030521;androgen receptor signaling pathway;0.00199189914567479!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00202932416956355!GO:0008652;amino acid biosynthetic process;0.00208666731086565!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00234175790453378!GO:0032774;RNA biosynthetic process;0.00234343881243285!GO:0046483;heterocycle metabolic process;0.00244188625245878!GO:0030663;COPI coated vesicle membrane;0.00261128549890624!GO:0030126;COPI vesicle coat;0.00261128549890624!GO:0016197;endosome transport;0.00265390080596997!GO:0007006;mitochondrial membrane organization and biogenesis;0.00267519815548148!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00269733159227961!GO:0031970;organelle envelope lumen;0.00269837002226038!GO:0006351;transcription, DNA-dependent;0.00270958289937781!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00277796483485231!GO:0045047;protein targeting to ER;0.00277796483485231!GO:0006383;transcription from RNA polymerase III promoter;0.00281499326356526!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00290430926861303!GO:0006695;cholesterol biosynthetic process;0.00293317675030727!GO:0030176;integral to endoplasmic reticulum membrane;0.00300151754521956!GO:0007040;lysosome organization and biogenesis;0.00305080830160391!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00305080830160391!GO:0006643;membrane lipid metabolic process;0.00307898646691687!GO:0006891;intra-Golgi vesicle-mediated transport;0.00320800756493483!GO:0051252;regulation of RNA metabolic process;0.00325018833832926!GO:0030133;transport vesicle;0.00326397842204972!GO:0003711;transcription elongation regulator activity;0.00358680856966321!GO:0050789;regulation of biological process;0.00377621578712015!GO:0031901;early endosome membrane;0.00402308548868954!GO:0006417;regulation of translation;0.00411956495407242!GO:0044262;cellular carbohydrate metabolic process;0.00421165789490755!GO:0043492;ATPase activity, coupled to movement of substances;0.0042669413959658!GO:0051087;chaperone binding;0.00439524744630208!GO:0016408;C-acyltransferase activity;0.00455861746278677!GO:0008139;nuclear localization sequence binding;0.00456717434358544!GO:0045045;secretory pathway;0.00457130827858086!GO:0016860;intramolecular oxidoreductase activity;0.00465823822669619!GO:0006302;double-strand break repair;0.00467001716396909!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0047254674447849!GO:0009081;branched chain family amino acid metabolic process;0.00480258128709453!GO:0006338;chromatin remodeling;0.00483766726975299!GO:0018196;peptidyl-asparagine modification;0.00513135014695827!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00513135014695827!GO:0051052;regulation of DNA metabolic process;0.00519474139130964!GO:0030880;RNA polymerase complex;0.00530957705057053!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00538576477582262!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00542285584836568!GO:0004674;protein serine/threonine kinase activity;0.00542709543107014!GO:0030518;steroid hormone receptor signaling pathway;0.00552090752864214!GO:0031324;negative regulation of cellular metabolic process;0.00552978685693102!GO:0000228;nuclear chromosome;0.00559129212674149!GO:0016564;transcription repressor activity;0.00559831675570946!GO:0016272;prefoldin complex;0.0057740501923133!GO:0007017;microtubule-based process;0.005815474077815!GO:0006506;GPI anchor biosynthetic process;0.00605121844508672!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00610878034075359!GO:0008312;7S RNA binding;0.00612989038175655!GO:0006284;base-excision repair;0.00642751663535871!GO:0006767;water-soluble vitamin metabolic process;0.00642751663535871!GO:0043022;ribosome binding;0.00644650936347739!GO:0006405;RNA export from nucleus;0.00649633005418383!GO:0003702;RNA polymerase II transcription factor activity;0.00651421216370816!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00660726664820187!GO:0001726;ruffle;0.00672001127102311!GO:0005669;transcription factor TFIID complex;0.00673076836827951!GO:0043488;regulation of mRNA stability;0.00706278637760029!GO:0043487;regulation of RNA stability;0.00706278637760029!GO:0042981;regulation of apoptosis;0.00753027329204691!GO:0030137;COPI-coated vesicle;0.00763072892616779!GO:0050681;androgen receptor binding;0.00794948582715763!GO:0030134;ER to Golgi transport vesicle;0.00797691281444658!GO:0005774;vacuolar membrane;0.00797691281444658!GO:0032508;DNA duplex unwinding;0.00798018945762856!GO:0032392;DNA geometric change;0.00798018945762856!GO:0008022;protein C-terminus binding;0.0080747100971465!GO:0000082;G1/S transition of mitotic cell cycle;0.00828747883340543!GO:0017166;vinculin binding;0.00831721304644297!GO:0051540;metal cluster binding;0.00846822167831493!GO:0051536;iron-sulfur cluster binding;0.00846822167831493!GO:0030132;clathrin coat of coated pit;0.00881955393413391!GO:0006505;GPI anchor metabolic process;0.00888558032522259!GO:0045947;negative regulation of translational initiation;0.00892372724714805!GO:0007033;vacuole organization and biogenesis;0.00892437196634041!GO:0006519;amino acid and derivative metabolic process;0.00901299868110414!GO:0046966;thyroid hormone receptor binding;0.00945088504456682!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00945366252631826!GO:0051539;4 iron, 4 sulfur cluster binding;0.00953415579712012!GO:0003678;DNA helicase activity;0.00967140188831879!GO:0043067;regulation of programmed cell death;0.00967242802567309!GO:0043414;biopolymer methylation;0.00968011637283916!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00986440364375315!GO:0000428;DNA-directed RNA polymerase complex;0.00986440364375315!GO:0043284;biopolymer biosynthetic process;0.0100681720775621!GO:0005832;chaperonin-containing T-complex;0.0103317524736484!GO:0006644;phospholipid metabolic process;0.0104931784304262!GO:0030036;actin cytoskeleton organization and biogenesis;0.0107097553608129!GO:0006144;purine base metabolic process;0.0108939060863155!GO:0032259;methylation;0.0117442509180639!GO:0006595;polyamine metabolic process;0.0117516831225189!GO:0000096;sulfur amino acid metabolic process;0.0121222106524397!GO:0031529;ruffle organization and biogenesis;0.0123629756743749!GO:0030027;lamellipodium;0.0125466166854023!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0132090795755145!GO:0015002;heme-copper terminal oxidase activity;0.0132090795755145!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0132090795755145!GO:0004129;cytochrome-c oxidase activity;0.0132090795755145!GO:0003684;damaged DNA binding;0.0132414245375597!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0132414245375597!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0134397672441065!GO:0007265;Ras protein signal transduction;0.0134695449020955!GO:0007021;tubulin folding;0.0138380464583236!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0138707793833541!GO:0046983;protein dimerization activity;0.0141066011501263!GO:0006268;DNA unwinding during replication;0.0141095154512965!GO:0006497;protein amino acid lipidation;0.014663902957418!GO:0008287;protein serine/threonine phosphatase complex;0.0147685982599344!GO:0044454;nuclear chromosome part;0.014809203341204!GO:0016407;acetyltransferase activity;0.0149263059429572!GO:0006376;mRNA splice site selection;0.0149562625846642!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0149562625846642!GO:0048523;negative regulation of cellular process;0.0151815888690153!GO:0042158;lipoprotein biosynthetic process;0.0151885320731175!GO:0045449;regulation of transcription;0.0153606565208666!GO:0030029;actin filament-based process;0.0155832256819165!GO:0050178;phenylpyruvate tautomerase activity;0.0157663187133193!GO:0000786;nucleosome;0.0161326147726434!GO:0004527;exonuclease activity;0.0161398521361673!GO:0003756;protein disulfide isomerase activity;0.0163696655689162!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0163696655689162!GO:0030127;COPII vesicle coat;0.0165239648724844!GO:0012507;ER to Golgi transport vesicle membrane;0.0165239648724844!GO:0006892;post-Golgi vesicle-mediated transport;0.0168760178667236!GO:0005996;monosaccharide metabolic process;0.0169773784082655!GO:0019318;hexose metabolic process;0.0171183208905172!GO:0008092;cytoskeletal protein binding;0.0173630634061861!GO:0006611;protein export from nucleus;0.0176581244918484!GO:0006740;NADPH regeneration;0.0180792225432727!GO:0006098;pentose-phosphate shunt;0.0180792225432727!GO:0001725;stress fiber;0.0185177615040683!GO:0032432;actin filament bundle;0.0185177615040683!GO:0007088;regulation of mitosis;0.0185309626203149!GO:0042393;histone binding;0.0186175692950731!GO:0005869;dynactin complex;0.0192320012587643!GO:0044437;vacuolar part;0.0193728822886886!GO:0008276;protein methyltransferase activity;0.0197070494771074!GO:0030658;transport vesicle membrane;0.0199785794885923!GO:0003677;DNA binding;0.020486404245186!GO:0006289;nucleotide-excision repair;0.0206306029145902!GO:0044438;microbody part;0.0211459229098904!GO:0044439;peroxisomal part;0.0211459229098904!GO:0031968;organelle outer membrane;0.0218383362570261!GO:0031124;mRNA 3'-end processing;0.0222393865060785!GO:0008180;signalosome;0.0222393865060785!GO:0009451;RNA modification;0.0222393865060785!GO:0051287;NAD binding;0.0222898866412411!GO:0005741;mitochondrial outer membrane;0.0223056961697389!GO:0008097;5S rRNA binding;0.022641805631242!GO:0019783;small conjugating protein-specific protease activity;0.0226508388104735!GO:0022406;membrane docking;0.0226508388104735!GO:0048278;vesicle docking;0.0226508388104735!GO:0000793;condensed chromosome;0.0227582956048819!GO:0005850;eukaryotic translation initiation factor 2 complex;0.022810319576758!GO:0031123;RNA 3'-end processing;0.0228969218548051!GO:0006541;glutamine metabolic process;0.0231239333928713!GO:0030145;manganese ion binding;0.0231724777722643!GO:0019867;outer membrane;0.0232211302383254!GO:0003746;translation elongation factor activity;0.0235924006913722!GO:0000123;histone acetyltransferase complex;0.0235951033338371!GO:0008538;proteasome activator activity;0.0238071792354141!GO:0006275;regulation of DNA replication;0.0242324989723741!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0244670579902809!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0248330047875748!GO:0030833;regulation of actin filament polymerization;0.0248330047875748!GO:0008234;cysteine-type peptidase activity;0.0250378357050745!GO:0031903;microbody membrane;0.0259645857525852!GO:0005778;peroxisomal membrane;0.0259645857525852!GO:0000339;RNA cap binding;0.026056247714477!GO:0046128;purine ribonucleoside metabolic process;0.026056247714477!GO:0042278;purine nucleoside metabolic process;0.026056247714477!GO:0009112;nucleobase metabolic process;0.0262808923154209!GO:0009308;amine metabolic process;0.0264561313240714!GO:0035267;NuA4 histone acetyltransferase complex;0.0276339083459988!GO:0031625;ubiquitin protein ligase binding;0.0276339083459988!GO:0006730;one-carbon compound metabolic process;0.0276339083459988!GO:0043189;H4/H2A histone acetyltransferase complex;0.0280097818165251!GO:0004177;aminopeptidase activity;0.0283061015842252!GO:0022884;macromolecule transmembrane transporter activity;0.028315928622369!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.028315928622369!GO:0006516;glycoprotein catabolic process;0.0285693110381746!GO:0006310;DNA recombination;0.0286892644932156!GO:0044255;cellular lipid metabolic process;0.0288652068474512!GO:0000922;spindle pole;0.028917014010534!GO:0004843;ubiquitin-specific protease activity;0.0291534088246616!GO:0004518;nuclease activity;0.0297536199330594!GO:0006007;glucose catabolic process;0.0300424819914281!GO:0031326;regulation of cellular biosynthetic process;0.030684967261376!GO:0004185;serine carboxypeptidase activity;0.031225969116966!GO:0009892;negative regulation of metabolic process;0.0312688491788349!GO:0045767;regulation of anti-apoptosis;0.0315412968476939!GO:0008320;protein transmembrane transporter activity;0.031658539858897!GO:0006904;vesicle docking during exocytosis;0.031658539858897!GO:0009083;branched chain family amino acid catabolic process;0.0319527738480784!GO:0016125;sterol metabolic process;0.0327904584285645!GO:0042809;vitamin D receptor binding;0.0333390588808658!GO:0006779;porphyrin biosynthetic process;0.0335646901401165!GO:0033014;tetrapyrrole biosynthetic process;0.0335646901401165!GO:0008017;microtubule binding;0.0335646901401165!GO:0051059;NF-kappaB binding;0.0341156701326299!GO:0051656;establishment of organelle localization;0.0341156701326299!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.034388469786455!GO:0006979;response to oxidative stress;0.0345971376326831!GO:0000178;exosome (RNase complex);0.0347656235768413!GO:0006378;mRNA polyadenylation;0.0349531267263321!GO:0031902;late endosome membrane;0.0349531267263321!GO:0005784;translocon complex;0.0357213677427049!GO:0006066;alcohol metabolic process;0.0358616462787554!GO:0000086;G2/M transition of mitotic cell cycle;0.0361203966884206!GO:0005876;spindle microtubule;0.0366499855317482!GO:0033559;unsaturated fatty acid metabolic process;0.0367924492767819!GO:0006636;unsaturated fatty acid biosynthetic process;0.0367924492767819!GO:0005874;microtubule;0.0368513115696321!GO:0006733;oxidoreduction coenzyme metabolic process;0.0370497742583723!GO:0030660;Golgi-associated vesicle membrane;0.0372787781013023!GO:0004221;ubiquitin thiolesterase activity;0.0372908877982871!GO:0016717;oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water;0.037530392145068!GO:0006778;porphyrin metabolic process;0.037530392145068!GO:0033013;tetrapyrrole metabolic process;0.037530392145068!GO:0030522;intracellular receptor-mediated signaling pathway;0.0376569396160577!GO:0030433;ER-associated protein catabolic process;0.0386138470278142!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0386138470278142!GO:0009116;nucleoside metabolic process;0.0386955311202628!GO:0050662;coenzyme binding;0.0386955311202628!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0390076476376043!GO:0043433;negative regulation of transcription factor activity;0.0401033232071493!GO:0000792;heterochromatin;0.0404721663685115!GO:0031628;opioid receptor binding;0.040534131614736!GO:0031852;mu-type opioid receptor binding;0.040534131614736!GO:0032153;cell division site;0.0405953841337502!GO:0032155;cell division site part;0.0405953841337502!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0406113254813558!GO:0008286;insulin receptor signaling pathway;0.0424073865754473!GO:0007050;cell cycle arrest;0.0424073865754473!GO:0000790;nuclear chromatin;0.0424073865754473!GO:0006807;nitrogen compound metabolic process;0.0424073865754473!GO:0006355;regulation of transcription, DNA-dependent;0.0424073865754473!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0424322465711338!GO:0003988;acetyl-CoA C-acyltransferase activity;0.043559287718468!GO:0046488;phosphatidylinositol metabolic process;0.0443040297093574!GO:0008553;hydrogen-exporting ATPase activity, phosphorylative mechanism;0.0444520570124124!GO:0000097;sulfur amino acid biosynthetic process;0.0447278514015051!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0447988803979333!GO:0016481;negative regulation of transcription;0.0450515241370592!GO:0051053;negative regulation of DNA metabolic process;0.0450515241370592!GO:0004003;ATP-dependent DNA helicase activity;0.0450840304830764!GO:0005777;peroxisome;0.0451974695950607!GO:0042579;microbody;0.0451974695950607!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0458690606950868!GO:0031301;integral to organelle membrane;0.0458724977494841!GO:0006897;endocytosis;0.0459423260543221!GO:0010324;membrane invagination;0.0459423260543221!GO:0040029;regulation of gene expression, epigenetic;0.0465317375738781!GO:0006220;pyrimidine nucleotide metabolic process;0.0465372592016606!GO:0048037;cofactor binding;0.0467101423979667!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0467101423979667!GO:0008213;protein amino acid alkylation;0.0468840027266198!GO:0006479;protein amino acid methylation;0.0468840027266198!GO:0006354;RNA elongation;0.0471036620006747!GO:0008537;proteasome activator complex;0.0471036620006747!GO:0003923;GPI-anchor transamidase activity;0.0472185200372373!GO:0016255;attachment of GPI anchor to protein;0.0472185200372373!GO:0042765;GPI-anchor transamidase complex;0.0472185200372373!GO:0031272;regulation of pseudopodium formation;0.047521529926812!GO:0031269;pseudopodium formation;0.047521529926812!GO:0031344;regulation of cell projection organization and biogenesis;0.047521529926812!GO:0031268;pseudopodium organization and biogenesis;0.047521529926812!GO:0031346;positive regulation of cell projection organization and biogenesis;0.047521529926812!GO:0031274;positive regulation of pseudopodium formation;0.047521529926812!GO:0051101;regulation of DNA binding;0.0482598911217325!GO:0032200;telomere organization and biogenesis;0.0485832728984835!GO:0000723;telomere maintenance;0.0485832728984835!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0487662309667638!GO:0043596;nuclear replication fork;0.0490527884325773!GO:0006914;autophagy;0.0494405668550191!GO:0019238;cyclohydrolase activity;0.0494552423219305!GO:0030125;clathrin vesicle coat;0.0495276461152517!GO:0030665;clathrin coated vesicle membrane;0.0495276461152517!GO:0003725;double-stranded RNA binding;0.0496508559546131!GO:0046519;sphingoid metabolic process;0.0497856998674854!GO:0000725;recombinational repair;0.0499798807556222!GO:0000724;double-strand break repair via homologous recombination;0.0499798807556222 | |||
|sample_id=10785 | |sample_id=10785 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=stomach | |sample_tissue=stomach | ||
|top_motifs=SNAI1..3:2.12356086323;HOXA9_MEIS1:1.50492768912;FOXQ1:1.41918692481;HIF1A:1.41773492287;bHLH_family:1.36050206119;ZEB1:1.25048797691;PAX1,9:1.21391252199;TEAD1:1.20681677217;HOX{A6,A7,B6,B7}:1.14773576013;TEF:1.14329829061;PITX1..3:1.04936584374;FOXD3:1.04258203924;VSX1,2:1.02521717827;TOPORS:1.02373023464;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.0020406933;ZNF384:0.954711479757;NFY{A,B,C}:0.942877793138;IKZF2:0.934678215608;AIRE:0.858099580874;ZNF143:0.849161135142;MYOD1:0.822182646151;LHX3,4:0.801562909477;LMO2:0.797782862468;FOXP1:0.794385593438;ESRRA:0.782912774744;FOXL1:0.754568035495;XCPE1{core}:0.732642393427;ELK1,4_GABP{A,B1}:0.731973572525;POU1F1:0.723711671665;NKX2-1,4:0.664359031353;OCT4_SOX2{dimer}:0.624917708489;CDC5L:0.560487251502;CREB1:0.554969121967;CRX:0.549227247564;SP1:0.533734782412;GATA6:0.53097072976;GFI1:0.50094644853;PBX1:0.491997017977;E2F1..5:0.449489714794;NRF1:0.440257712323;PATZ1:0.390507598958;MYB:0.315930981471;SREBF1,2:0.313213125092;NR1H4:0.308891820278;POU2F1..3:0.307236261929;CDX1,2,4:0.295976366399;PRRX1,2:0.294735436263;STAT5{A,B}:0.281801205236;FOXM1:0.264418384151;IKZF1:0.243994433417;HNF4A_NR2F1,2:0.236168189538;MYBL2:0.235637795443;FOX{F1,F2,J1}:0.234460724379;EVI1:0.215521194397;ONECUT1,2:0.214865524179;ALX1:0.212905081068;YY1:0.190475631196;HLF:0.180804692354;NKX3-2:0.169663931154;ATF4:0.168429887185;HOX{A5,B5}:0.150940246622;FOXA2:0.145704392885;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.138630534898;ALX4:0.132195373425;ZIC1..3:0.127950589254;RORA:0.121173379974;FOXN1:0.0885639945085;RBPJ:0.0410062753935;ZNF148:0.0355854274357;ATF2:0.0341264798123;POU3F1..4:0.0288098608876;BREu{core}:0.0090073956732;CUX2:-0.0187072536954;FOXO1,3,4:-0.0224944440171;SOX{8,9,10}:-0.030878345845;TBX4,5:-0.0711007078398;ESR1:-0.0782618950542;HNF1A:-0.0916080003839;GCM1,2:-0.0965026525043;PDX1:-0.118793156401;HES1:-0.119198676084;PAX2:-0.143259069027;KLF4:-0.150706598718;UFEwm:-0.17043718443;FOX{D1,D2}:-0.200040296752;SOX17:-0.202617130673;ZBTB16:-0.230068249743;ZBTB6:-0.234917464473;EBF1:-0.23520578165;PAX4:-0.242952898014;CEBPA,B_DDIT3:-0.255282044953;HMGA1,2:-0.274956632321;NKX2-3_NKX2-5:-0.279038212503;ZFP161:-0.286700349846;PAX3,7:-0.301076626365;FOX{I1,J2}:-0.306196510659;RFX2..5_RFXANK_RFXAP:-0.312890485718;EN1,2:-0.327260616585;SPZ1:-0.330051238193;DMAP1_NCOR{1,2}_SMARC:-0.342258524828;GATA4:-0.353048379498;NKX6-1,2:-0.370016613153;NFE2:-0.38683110628;NR5A1,2:-0.39040108967;ADNP_IRX_SIX_ZHX:-0.405492634634;FOS_FOS{B,L1}_JUN{B,D}:-0.419834229036;NFIX:-0.424612193604;TFAP2{A,C}:-0.427446696195;MEF2{A,B,C,D}:-0.447900865196;AHR_ARNT_ARNT2:-0.453178577277;RXRA_VDR{dimer}:-0.453900763908;MED-1{core}:-0.453961799751;ARID5B:-0.457337416935;STAT1,3:-0.463527092156;ATF5_CREB3:-0.464884137822;REST:-0.503484624609;XBP1:-0.506199795616;NFE2L2:-0.507615429792;NFKB1_REL_RELA:-0.51312067471;BACH2:-0.517126050191;FOXP3:-0.524707634044;TFAP4:-0.562719485994;STAT2,4,6:-0.572198372644;TFAP2B:-0.574771937385;MTF1:-0.582036219158;NANOG:-0.590858977664;NKX3-1:-0.592517759607;MAZ:-0.593597711883;GTF2I:-0.616649878406;FOSL2:-0.61892846071;ATF6:-0.630630588817;PAX8:-0.634416925987;PAX5:-0.640062950929;SPIB:-0.643895312397;IRF7:-0.657202198872;SOX5:-0.671479961563;POU6F1:-0.685063667009;SOX2:-0.685639576856;ZNF423:-0.68579619729;GFI1B:-0.699183979989;SPI1:-0.709142150873;POU5F1:-0.737456315603;HOX{A4,D4}:-0.738238070467;GZF1:-0.739566283182;ELF1,2,4:-0.765467701804;TAL1_TCF{3,4,12}:-0.781872204073;RREB1:-0.795602130627;TP53:-0.81267378943;DBP:-0.814676180977;PPARG:-0.827456100039;TBP:-0.827987809247;RFX1:-0.834726256682;ETS1,2:-0.837526415406;RXR{A,B,G}:-0.843309986323;TGIF1:-0.844039512773;JUN:-0.852990367585;TLX1..3_NFIC{dimer}:-0.853349307977;PAX6:-0.859997400695;TFDP1:-0.870347742007;RUNX1..3:-0.880151100691;MAFB:-0.88833584465;NFE2L1:-0.89785612499;SRF:-0.94101670347;ZNF238:-0.941898791316;LEF1_TCF7_TCF7L1,2:-0.963464244708;TLX2:-0.974634575465;GTF2A1,2:-0.990360500013;HBP1_HMGB_SSRP1_UBTF:-0.99616448836;NANOG{mouse}:-0.998553734854;NFIL3:-1.0040772511;MZF1:-1.016388657;MYFfamily:-1.034383619;HIC1:-1.03919579962;PRDM1:-1.0431909541;GLI1..3:-1.06521589068;TFCP2:-1.08935653069;EGR1..3:-1.11211993305;IRF1,2:-1.1295347522;NR3C1:-1.18148869635;EP300:-1.19811352733;NKX2-2,8:-1.2099122914;MTE{core}:-1.24534883047;HMX1:-1.28308905892;HAND1,2:-1.45442441308;NR6A1:-1.5147873888;BPTF:-1.52717747944;NHLH1,2:-1.55789254212;AR:-1.60519897852;HSF1,2:-1.69583707765;NFATC1..3:-1.79449490432;T:-1.96100867398;SMAD1..7,9:-2.61351366219 | |top_motifs=SNAI1..3:2.12356086323;HOXA9_MEIS1:1.50492768912;FOXQ1:1.41918692481;HIF1A:1.41773492287;bHLH_family:1.36050206119;ZEB1:1.25048797691;PAX1,9:1.21391252199;TEAD1:1.20681677217;HOX{A6,A7,B6,B7}:1.14773576013;TEF:1.14329829061;PITX1..3:1.04936584374;FOXD3:1.04258203924;VSX1,2:1.02521717827;TOPORS:1.02373023464;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.0020406933;ZNF384:0.954711479757;NFY{A,B,C}:0.942877793138;IKZF2:0.934678215608;AIRE:0.858099580874;ZNF143:0.849161135142;MYOD1:0.822182646151;LHX3,4:0.801562909477;LMO2:0.797782862468;FOXP1:0.794385593438;ESRRA:0.782912774744;FOXL1:0.754568035495;XCPE1{core}:0.732642393427;ELK1,4_GABP{A,B1}:0.731973572525;POU1F1:0.723711671665;NKX2-1,4:0.664359031353;OCT4_SOX2{dimer}:0.624917708489;CDC5L:0.560487251502;CREB1:0.554969121967;CRX:0.549227247564;SP1:0.533734782412;GATA6:0.53097072976;GFI1:0.50094644853;PBX1:0.491997017977;E2F1..5:0.449489714794;NRF1:0.440257712323;PATZ1:0.390507598958;MYB:0.315930981471;SREBF1,2:0.313213125092;NR1H4:0.308891820278;POU2F1..3:0.307236261929;CDX1,2,4:0.295976366399;PRRX1,2:0.294735436263;STAT5{A,B}:0.281801205236;FOXM1:0.264418384151;IKZF1:0.243994433417;HNF4A_NR2F1,2:0.236168189538;MYBL2:0.235637795443;FOX{F1,F2,J1}:0.234460724379;EVI1:0.215521194397;ONECUT1,2:0.214865524179;ALX1:0.212905081068;YY1:0.190475631196;HLF:0.180804692354;NKX3-2:0.169663931154;ATF4:0.168429887185;HOX{A5,B5}:0.150940246622;FOXA2:0.145704392885;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.138630534898;ALX4:0.132195373425;ZIC1..3:0.127950589254;RORA:0.121173379974;FOXN1:0.0885639945085;RBPJ:0.0410062753935;ZNF148:0.0355854274357;ATF2:0.0341264798123;POU3F1..4:0.0288098608876;BREu{core}:0.0090073956732;CUX2:-0.0187072536954;FOXO1,3,4:-0.0224944440171;SOX{8,9,10}:-0.030878345845;TBX4,5:-0.0711007078398;ESR1:-0.0782618950542;HNF1A:-0.0916080003839;GCM1,2:-0.0965026525043;PDX1:-0.118793156401;HES1:-0.119198676084;PAX2:-0.143259069027;KLF4:-0.150706598718;UFEwm:-0.17043718443;FOX{D1,D2}:-0.200040296752;SOX17:-0.202617130673;ZBTB16:-0.230068249743;ZBTB6:-0.234917464473;EBF1:-0.23520578165;PAX4:-0.242952898014;CEBPA,B_DDIT3:-0.255282044953;HMGA1,2:-0.274956632321;NKX2-3_NKX2-5:-0.279038212503;ZFP161:-0.286700349846;PAX3,7:-0.301076626365;FOX{I1,J2}:-0.306196510659;RFX2..5_RFXANK_RFXAP:-0.312890485718;EN1,2:-0.327260616585;SPZ1:-0.330051238193;DMAP1_NCOR{1,2}_SMARC:-0.342258524828;GATA4:-0.353048379498;NKX6-1,2:-0.370016613153;NFE2:-0.38683110628;NR5A1,2:-0.39040108967;ADNP_IRX_SIX_ZHX:-0.405492634634;FOS_FOS{B,L1}_JUN{B,D}:-0.419834229036;NFIX:-0.424612193604;TFAP2{A,C}:-0.427446696195;MEF2{A,B,C,D}:-0.447900865196;AHR_ARNT_ARNT2:-0.453178577277;RXRA_VDR{dimer}:-0.453900763908;MED-1{core}:-0.453961799751;ARID5B:-0.457337416935;STAT1,3:-0.463527092156;ATF5_CREB3:-0.464884137822;REST:-0.503484624609;XBP1:-0.506199795616;NFE2L2:-0.507615429792;NFKB1_REL_RELA:-0.51312067471;BACH2:-0.517126050191;FOXP3:-0.524707634044;TFAP4:-0.562719485994;STAT2,4,6:-0.572198372644;TFAP2B:-0.574771937385;MTF1:-0.582036219158;NANOG:-0.590858977664;NKX3-1:-0.592517759607;MAZ:-0.593597711883;GTF2I:-0.616649878406;FOSL2:-0.61892846071;ATF6:-0.630630588817;PAX8:-0.634416925987;PAX5:-0.640062950929;SPIB:-0.643895312397;IRF7:-0.657202198872;SOX5:-0.671479961563;POU6F1:-0.685063667009;SOX2:-0.685639576856;ZNF423:-0.68579619729;GFI1B:-0.699183979989;SPI1:-0.709142150873;POU5F1:-0.737456315603;HOX{A4,D4}:-0.738238070467;GZF1:-0.739566283182;ELF1,2,4:-0.765467701804;TAL1_TCF{3,4,12}:-0.781872204073;RREB1:-0.795602130627;TP53:-0.81267378943;DBP:-0.814676180977;PPARG:-0.827456100039;TBP:-0.827987809247;RFX1:-0.834726256682;ETS1,2:-0.837526415406;RXR{A,B,G}:-0.843309986323;TGIF1:-0.844039512773;JUN:-0.852990367585;TLX1..3_NFIC{dimer}:-0.853349307977;PAX6:-0.859997400695;TFDP1:-0.870347742007;RUNX1..3:-0.880151100691;MAFB:-0.88833584465;NFE2L1:-0.89785612499;SRF:-0.94101670347;ZNF238:-0.941898791316;LEF1_TCF7_TCF7L1,2:-0.963464244708;TLX2:-0.974634575465;GTF2A1,2:-0.990360500013;HBP1_HMGB_SSRP1_UBTF:-0.99616448836;NANOG{mouse}:-0.998553734854;NFIL3:-1.0040772511;MZF1:-1.016388657;MYFfamily:-1.034383619;HIC1:-1.03919579962;PRDM1:-1.0431909541;GLI1..3:-1.06521589068;TFCP2:-1.08935653069;EGR1..3:-1.11211993305;IRF1,2:-1.1295347522;NR3C1:-1.18148869635;EP300:-1.19811352733;NKX2-2,8:-1.2099122914;MTE{core}:-1.24534883047;HMX1:-1.28308905892;HAND1,2:-1.45442441308;NR6A1:-1.5147873888;BPTF:-1.52717747944;NHLH1,2:-1.55789254212;AR:-1.60519897852;HSF1,2:-1.69583707765;NFATC1..3:-1.79449490432;T:-1.96100867398;SMAD1..7,9:-2.61351366219 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10785-110H2;search_select_hide=table117:FF:10785-110H2 | |||
}} | }} | ||
Latest revision as of 15:04, 3 June 2020
| Name: | choriocarcinoma cell line:SCH |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11875 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11875
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11875
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.63 |
| 10 | 10 | 0.703 |
| 100 | 100 | 0.181 |
| 101 | 101 | 0.757 |
| 102 | 102 | 0.65 |
| 103 | 103 | 0.212 |
| 104 | 104 | 0.193 |
| 105 | 105 | 0.939 |
| 106 | 106 | 0.231 |
| 107 | 107 | 0.237 |
| 108 | 108 | 0.856 |
| 109 | 109 | 0.243 |
| 11 | 11 | 0.829 |
| 110 | 110 | 0.159 |
| 111 | 111 | 0.817 |
| 112 | 112 | 0.486 |
| 113 | 113 | 0.0322 |
| 114 | 114 | 0.559 |
| 115 | 115 | 0.347 |
| 116 | 116 | 0.623 |
| 117 | 117 | 0.0393 |
| 118 | 118 | 0.229 |
| 119 | 119 | 0.553 |
| 12 | 12 | 0.698 |
| 120 | 120 | 0.951 |
| 121 | 121 | 0.741 |
| 122 | 122 | 0.565 |
| 123 | 123 | 0.255 |
| 124 | 124 | 0.103 |
| 125 | 125 | 0.593 |
| 126 | 126 | 0.463 |
| 127 | 127 | 0.611 |
| 128 | 128 | 0.18 |
| 129 | 129 | 0.698 |
| 13 | 13 | 0.00197 |
| 130 | 130 | 0.358 |
| 131 | 131 | 0.298 |
| 132 | 132 | 0.386 |
| 133 | 133 | 0.00512 |
| 134 | 134 | 0.878 |
| 135 | 135 | 0.00564 |
| 136 | 136 | 0.0149 |
| 137 | 137 | 0.172 |
| 138 | 138 | 0.588 |
| 139 | 139 | 0.444 |
| 14 | 14 | 0.924 |
| 140 | 140 | 0.599 |
| 141 | 141 | 0.123 |
| 142 | 142 | 0.459 |
| 143 | 143 | 0.0466 |
| 144 | 144 | 0.162 |
| 145 | 145 | 0.902 |
| 146 | 146 | 0.654 |
| 147 | 147 | 0.0671 |
| 148 | 148 | 0.0186 |
| 149 | 149 | 0.717 |
| 15 | 15 | 0.796 |
| 150 | 150 | 0.946 |
| 151 | 151 | 0.241 |
| 152 | 152 | 0.446 |
| 153 | 153 | 0.94 |
| 154 | 154 | 0.366 |
| 155 | 155 | 0.993 |
| 156 | 156 | 0.823 |
| 157 | 157 | 0.775 |
| 158 | 158 | 0.4 |
| 159 | 159 | 0.349 |
| 16 | 16 | 0.882 |
| 160 | 160 | 0.579 |
| 161 | 161 | 0.693 |
| 162 | 162 | 0.342 |
| 163 | 163 | 0.54 |
| 164 | 164 | 0.211 |
| 165 | 165 | 0.295 |
| 166 | 166 | 0.0314 |
| 167 | 167 | 0.851 |
| 168 | 168 | 0.156 |
| 169 | 169 | 0.511 |
| 17 | 17 | 0.421 |
| 18 | 18 | 0.346 |
| 19 | 19 | 0.705 |
| 2 | 2 | 0.485 |
| 20 | 20 | 0.139 |
| 21 | 21 | 0.665 |
| 22 | 22 | 0.658 |
| 23 | 23 | 0.159 |
| 24 | 24 | 0.481 |
| 25 | 25 | 0.812 |
| 26 | 26 | 0.391 |
| 27 | 27 | 0.256 |
| 28 | 28 | 0.786 |
| 29 | 29 | 0.441 |
| 3 | 3 | 0.944 |
| 30 | 30 | 0.925 |
| 31 | 31 | 0.551 |
| 32 | 32 | 0.194 |
| 33 | 33 | 0.343 |
| 34 | 34 | 0.785 |
| 35 | 35 | 0.389 |
| 36 | 36 | 0.298 |
| 37 | 37 | 0.714 |
| 38 | 38 | 0.786 |
| 39 | 39 | 0.277 |
| 4 | 4 | 0.881 |
| 40 | 40 | 0.0338 |
| 41 | 41 | 0.0187 |
| 42 | 42 | 0.795 |
| 43 | 43 | 0.777 |
| 44 | 44 | 0.738 |
| 45 | 45 | 0.529 |
| 46 | 46 | 0.527 |
| 47 | 47 | 0.536 |
| 48 | 48 | 0.698 |
| 49 | 49 | 0.818 |
| 5 | 5 | 0.246 |
| 50 | 50 | 0.117 |
| 51 | 51 | 0.655 |
| 52 | 52 | 0.743 |
| 53 | 53 | 0.813 |
| 54 | 54 | 0.652 |
| 55 | 55 | 0.583 |
| 56 | 56 | 0.825 |
| 57 | 57 | 0.254 |
| 58 | 58 | 0.615 |
| 59 | 59 | 0.505 |
| 6 | 6 | 0.487 |
| 60 | 60 | 0.72 |
| 61 | 61 | 0.44 |
| 62 | 62 | 0.489 |
| 63 | 63 | 0.824 |
| 64 | 64 | 0.871 |
| 65 | 65 | 0.618 |
| 66 | 66 | 0.0138 |
| 67 | 67 | 0.957 |
| 68 | 68 | 0.339 |
| 69 | 69 | 0.633 |
| 7 | 7 | 0.152 |
| 70 | 70 | 0.665 |
| 71 | 71 | 0.381 |
| 72 | 72 | 0.715 |
| 73 | 73 | 0.528 |
| 74 | 74 | 0.0598 |
| 75 | 75 | 0.13 |
| 76 | 76 | 0.159 |
| 77 | 77 | 0.839 |
| 78 | 78 | 0.0109 |
| 79 | 79 | 0.233 |
| 8 | 8 | 0.201 |
| 80 | 80 | 0.13 |
| 81 | 81 | 0.305 |
| 82 | 82 | 0.735 |
| 83 | 83 | 0.633 |
| 84 | 84 | 0.293 |
| 85 | 85 | 0.0508 |
| 86 | 86 | 0.896 |
| 87 | 87 | 0.13 |
| 88 | 88 | 0.897 |
| 89 | 89 | 0.211 |
| 9 | 9 | 0.11 |
| 90 | 90 | 0.962 |
| 91 | 91 | 0.0754 |
| 92 | 92 | 0.19 |
| 93 | 93 | 0.342 |
| 94 | 94 | 0.864 |
| 95 | 95 | 0.0065 |
| 96 | 96 | 0.819 |
| 97 | 97 | 0.847 |
| 98 | 98 | 0.866 |
| 99 | 99 | 0.689 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11875
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101575 choriocarcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000255 (eukaryotic cell)
0000039 (germ line cell)
0000586 (germ cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101575 (choriocarcinoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
