FF:10800-110I8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005366 | ||
|accession_numbers=CAGE;DRX008004;DRR008876;DRZ000301;DRZ001686;DRZ011651;DRZ013036 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000002,UBERON:0000995,UBERON:0003134,UBERON:0001560,UBERON:0005156,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID:4,DOID: | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:193,DOID:120,DOID:4362 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101967 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101967 | |fonse_cell_line=FF:0101967 | ||
|fonse_cell_line_closure=FF:0101967 | |fonse_cell_line_closure=FF:0101967 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520cervical%2520cancer%2520cell%2520line%253aHCSC-1.CNhs11885.10800-110I8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520cervical%2520cancer%2520cell%2520line%253aHCSC-1.CNhs11885.10800-110I8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520cervical%2520cancer%2520cell%2520line%253aHCSC-1.CNhs11885.10800-110I8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520cervical%2520cancer%2520cell%2520line%253aHCSC-1.CNhs11885.10800-110I8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520cervical%2520cancer%2520cell%2520line%253aHCSC-1.CNhs11885.10800-110I8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10800-110I8 | |id=FF:10800-110I8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0101967 | ||
|is_obsolete= | |||
|library_id=CNhs11885 | |||
|library_id_phase_based=2:CNhs11885 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10800 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10800 | |||
|name=small cell cervical cancer cell line:HCSC-1 | |name=small cell cervical cancer cell line:HCSC-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11885,LSID830,release010,COMPLETED | |profile_hcage=CNhs11885,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0456469269599343,0,0,0,0,-0.0690241761665175,0.166690235731849,0.00948889778576528,0.055624440025079,0,0,0,0.0912938539198686,0,0,0,0,0,0,0,0,0,0.338802254014395,0,0.0456469269599343,0,0.261833872526734,0,0.238441255741507,0,0,-0.0416627358589937,0,0,0,0,0,0,0,0,0,0,0,0,0.058335036091085,0.0430717786808144,0,0,0,0,0,0,0,0.302829524773907,0,0,0,0,0,0.0815577399506635,0.0912938539198686,0.189858668736674,0,0,0.133569585256183,0,0,0,0,0,0,0,0,0.0912938539198686,0,0,0,0,0,0,0,0,0.0267355687974962,0,0,0.00515286413065724,0,0,0.0845788032227821,0.0396009325821114,0.0456469269599343,0,0,0.180730411454818,0.273431771411551,0,0,0,0,0.0686548844941425,0.022626332393679,0,0,0,0,0,0,0.0912938539198686,0,0,0,0,0,0,0,0,0,0,0.470917839171915,0.0912938539198686,0,0,-0.00542409384638942,-0.0645078252730213,0,0,0.0912938539198686,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.0912938539198686,0.0686548844941425,0,0,0,0,0,0,0.0912938539198686,0.0912938539198686,0,0,0,-0.0804886395537155,0,0.0495815263014596,0.51057394925001,0.0456469269599343,0,0.19129213141724,0,0,0,0,0.0912938539198686,0,0,0.166690235731849,0,0.607866037447659,0,0.116277684142534,0.128992044825859,0,0,0,0.060451779582362,-0.305472230898407,0,0.0363444501544226,0.162568951391911,0,0,0,0,-0.1868955514684,0,0.110033728675539,0.00857368559645127,0.741603783996774,-0.356970633468001,0.0355813571386866,0,0,0,-0.0607881267450262,0.215678092500657,0,0,-0.121779851751874,0.282094613143532,0,0,-0.391044581551635,0,0.798702119483796,0.111013879275154,0,0.0738930431179758,0,0,0,0,0,0,0,0.166690235731849,0.0912938539198686,0,0,-0.0118465398615024,0.131122599612048,0,0,0,0,-0.178060562025558,0,0.00364292236928285,-0.373286155956567,-0.25944215937699,0.0852151610926928,0.246137786775471,0.00927606071466978,-0.135699491278064,0.176714841644894,0.0917744195264704,0.292259658685571,-0.147401849371139,-0.189981719549847,0,-0.133839640623569,0.11780338382781,0.109880273201722,-0.367481217598177,0.047177418579347,-0.257273673765302,0.544503071899463,0.0912938539198686,0,0,-0.184529704223636,0.0014320056419016,0,0.34547989501174,0.100427638517674,-0.003680729247002,-0.423218127888846,0.0828905848792885,0.131465046039842,0.347068461444086,-0.290746217164746,0.0575938935151395,0.118975305631858,0.24864144890511,0.630951609992791,0.0912938539198686,0.0415422653804692,0.293093749268811,0.101087427684959,0.00512295142085915,0.304662308254187,0.0229495928425004,0.128992044825859,-0.0865455019318875,0.073785638473578,0,-0.0989666021369077,-0.0866519665085896,0,0,0,0.0897119045676924,0,0.171130339859936,-0.118287120422301,0.259269702807278,0,0.197751767286053,0.176122431853913,0.184321605697204,0,0.0203507205796795,0.219034260997059,0.163384982254011,-0.118396718181143,0.0536558761115275,0.00349053661123949,0.0751260857161186,-0.164990696339003,0.455569688903234,1.26622228421446,-0.149857850761938,0.243633613371175,-0.160033129819636,-0.367734842182362,0.1300236750599,-0.0881268324752877,0,0.495326571644818,0.53640380279659,0.133500740897468,0.201797497632746,0,-0.547997325807087,0,-0.000292111068026513,0,0.172856133908469,0.113655340300242,0.695293491608065,0.0501292012660952,0.00460055448669894,0.189856579866803,-0.696837083854105,0,0.32999955289879,0,0.99518310059383,0.13648394664464,0.327262242190105,0.477499421502359,-0.0235328504445548,0.0617255594869313,0.173135213709924,0,0,0.0634559983761318,0.0513749922148906,0,0.0519927447604072,0.087762185403596,0.0267355687974962,0.0507191622969149,0,0,-0.22449531538486,0,0,0.229666545670484,0.404123518026277,0.4592225324175,-0.162032487566887,0.076611459087263,-0.108622809454255,0,0,-0.0108375302333267,0,-0.0478527657918164,0,0,0.0839786389030661,0.114285099479147,0,0,0.0912938539198686,0.0750150134379656,0,0,0,0,0.14342551498964,0,0,0.133707568400379,0.137291934146374,0.336399152009564,-0.194128745444015,0,0,0,0,0,0,0,0,-0.895365739202684,0.0891855324137801,0.163833614302859,0,0,0,0,-0.215723402553475,0.133162589914841,0.166690235731849,0.0348275292342173,0,0,0,0,0.00515286413065724,0,0,0,0.11545660623464,0.0335633968662046,-0.0133073011897265,0,0,0,-0.0460411891325107,0,0,0,0.030820352251984,0.264861317293672,0,0,-0.317564933121816,0,0.0335504344777611,0.254817272462723,0,0.0431863848516274,-0.887860252473099,-0.418403875483424,0,0,-0.170053277870019,0,0,0.00778712381602653,0,0.0912938539198686,0.0359849454551244,0,0,0,0,0,0,-0.123020658479887,0,0,0,0,0,0,0,0,0,0,0.0912938539198686,-0.0467048723606567,-0.00093020273864182,-0.0640596705171081,0,0,0,0.145308912150009,0,0,0.0215409038810312,0.107010437658442,0,0,0,0,0,0.0912938539198686,0,0,0.109188143350551,0,0,0,0,0,0.189858668736674,0,0,0,0.0912938539198686,0.111248880050158,0,0,0.00948889778576528,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.357252739770205,0,0,0,0,0,0.166690235731849,0,0.146371724401774,0,0,0,0,0.117028838760302,0,0,0,-0.104796384789156,0,-0.0690241761665175,0,0,0,0,0,0.0707308283582621,0.128992044825859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0186437237877775,0,0.0201056940857922,0.115353399643614,0,0,-0.149283234767117,0,0,0,0,0,0,0.084116182206113,0.0912938539198686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0912938539198686,0,0,0,0,0,0,0.082057587504725,0,0,0,0,0,0,0,0.238441255741507,0,0,0.364632333684818,0,0,0,0,0,0,0.0390677052300315,-0.283220399823148,0.195979850702309,0,0,0,0.191677059698956,0,0.0414848938721382,0.148856754035994,0.0912938539198686,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23091321246928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.338802254014395,0,0,0,0,0,0,0,0,0,0,0,0,0.0456469269599343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166690235731849,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166690235731849,-0.0800184682686384,0,0,0,0.0737648003222356,0,0,0,0,0,0,0.23091321246928,0,0.0912938539198686,0,0,0,0.0257551487528261,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=15.87789 | |rna_weight_ug=15.87789 | ||
|sample_age=48 | |sample_age=48 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb1205 | |sample_cell_catalog=jcrb1205 | ||
|sample_cell_line=HCSC-1 | |sample_cell_line=HCSC-1 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.43953649737964e-280!GO:0043226;organelle;1.65181956103034e-242!GO:0043229;intracellular organelle;5.48324473537692e-242!GO:0043227;membrane-bound organelle;6.82957240459411e-238!GO:0043231;intracellular membrane-bound organelle;6.82957240459411e-238!GO:0005737;cytoplasm;9.76327799772403e-177!GO:0044422;organelle part;1.34149476431427e-174!GO:0044446;intracellular organelle part;4.41645047004792e-173!GO:0044444;cytoplasmic part;3.71806559272619e-128!GO:0032991;macromolecular complex;1.2727253167241e-112!GO:0005634;nucleus;2.53160933569485e-104!GO:0044237;cellular metabolic process;1.03141865642343e-96!GO:0044238;primary metabolic process;5.10275916525888e-95!GO:0043170;macromolecule metabolic process;4.81857737800621e-87!GO:0030529;ribonucleoprotein complex;3.46720951094081e-84!GO:0044428;nuclear part;8.1114899310104e-81!GO:0005739;mitochondrion;2.70104275840599e-73!GO:0043233;organelle lumen;1.33025146263447e-72!GO:0031974;membrane-enclosed lumen;1.33025146263447e-72!GO:0003723;RNA binding;3.92150534873277e-71!GO:0043283;biopolymer metabolic process;1.07514394132863e-60!GO:0043234;protein complex;1.74406478630469e-60!GO:0005515;protein binding;2.41302608051639e-59!GO:0031090;organelle membrane;1.86409821969234e-57!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.06646646848703e-56!GO:0044429;mitochondrial part;3.01995361601021e-53!GO:0006396;RNA processing;8.99246021917492e-50!GO:0016043;cellular component organization and biogenesis;1.70050073581851e-49!GO:0010467;gene expression;2.07954636881766e-49!GO:0031967;organelle envelope;2.27164029201597e-49!GO:0031975;envelope;3.4875138212746e-49!GO:0005840;ribosome;2.40014132756084e-48!GO:0031981;nuclear lumen;3.16541408418716e-44!GO:0003735;structural constituent of ribosome;3.60911293923767e-42!GO:0043228;non-membrane-bound organelle;3.60911293923767e-42!GO:0043232;intracellular non-membrane-bound organelle;3.60911293923767e-42!GO:0006259;DNA metabolic process;2.15924078223394e-41!GO:0006996;organelle organization and biogenesis;4.26453294692714e-41!GO:0016071;mRNA metabolic process;9.10525306267056e-41!GO:0006412;translation;5.20187389694047e-40!GO:0015031;protein transport;5.5432197218486e-40!GO:0033036;macromolecule localization;1.51755034492936e-39!GO:0019538;protein metabolic process;3.34213433248612e-38!GO:0033279;ribosomal subunit;1.61955908231477e-37!GO:0009058;biosynthetic process;2.4657190935767e-37!GO:0008380;RNA splicing;8.98653287437863e-37!GO:0045184;establishment of protein localization;6.21467700387308e-36!GO:0008104;protein localization;7.75136626069251e-36!GO:0003676;nucleic acid binding;1.41569598835952e-35!GO:0006397;mRNA processing;1.87268049131794e-35!GO:0044267;cellular protein metabolic process;1.61505508084565e-34!GO:0046907;intracellular transport;1.96699223363602e-34!GO:0044249;cellular biosynthetic process;2.4112641870232e-34!GO:0005740;mitochondrial envelope;3.35255816060008e-34!GO:0044260;cellular macromolecule metabolic process;5.6972792852742e-34!GO:0065003;macromolecular complex assembly;1.14417534499125e-33!GO:0019866;organelle inner membrane;1.8267719036509e-33!GO:0007049;cell cycle;3.28939514622619e-33!GO:0031966;mitochondrial membrane;5.96790227219511e-33!GO:0005743;mitochondrial inner membrane;4.6229405296126e-31!GO:0005829;cytosol;5.27234293798499e-30!GO:0022607;cellular component assembly;7.54073201934229e-30!GO:0009059;macromolecule biosynthetic process;9.19403476481428e-30!GO:0005654;nucleoplasm;1.0597245312028e-28!GO:0051649;establishment of cellular localization;3.49617122480005e-28!GO:0005694;chromosome;4.77026676153889e-28!GO:0000166;nucleotide binding;5.96124306256944e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.07230599299735e-27!GO:0051641;cellular localization;2.04359901558448e-27!GO:0016070;RNA metabolic process;1.41032327268678e-26!GO:0005681;spliceosome;1.41483613488361e-25!GO:0006119;oxidative phosphorylation;3.70976489954061e-25!GO:0044427;chromosomal part;3.81317153091252e-25!GO:0006886;intracellular protein transport;6.47833385196192e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.2318588213063e-25!GO:0012505;endomembrane system;7.57644748144332e-25!GO:0006974;response to DNA damage stimulus;5.75008335101731e-24!GO:0000278;mitotic cell cycle;5.75008335101731e-24!GO:0044451;nucleoplasm part;5.92077625121475e-24!GO:0022402;cell cycle process;1.71107006207695e-23!GO:0044455;mitochondrial membrane part;1.80219597766669e-23!GO:0031980;mitochondrial lumen;5.34461093903136e-22!GO:0005759;mitochondrial matrix;5.34461093903136e-22!GO:0051276;chromosome organization and biogenesis;1.986208973519e-21!GO:0006281;DNA repair;2.67884530540393e-21!GO:0022403;cell cycle phase;2.8298961466622e-21!GO:0016462;pyrophosphatase activity;7.83370550514408e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.59941576089914e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;1.1884570078909e-20!GO:0044445;cytosolic part;1.30042075791198e-20!GO:0017111;nucleoside-triphosphatase activity;1.95624364394919e-20!GO:0032553;ribonucleotide binding;2.74821138514975e-20!GO:0032555;purine ribonucleotide binding;2.74821138514975e-20!GO:0006512;ubiquitin cycle;4.12120713848514e-20!GO:0015934;large ribosomal subunit;1.62228649016139e-19!GO:0000087;M phase of mitotic cell cycle;3.22364471922865e-19!GO:0005746;mitochondrial respiratory chain;3.22364471922865e-19!GO:0015935;small ribosomal subunit;3.75170661394278e-19!GO:0051301;cell division;4.99899635641488e-19!GO:0007067;mitosis;1.00787645598278e-18!GO:0017076;purine nucleotide binding;1.1366061854663e-18!GO:0005524;ATP binding;1.66877880344699e-18!GO:0032559;adenyl ribonucleotide binding;3.70737753090761e-18!GO:0006260;DNA replication;8.51137078560917e-18!GO:0016874;ligase activity;1.04212884736303e-17!GO:0006457;protein folding;1.31068632650416e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.65628152105668e-17!GO:0003954;NADH dehydrogenase activity;1.65628152105668e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.65628152105668e-17!GO:0000279;M phase;1.98820655315889e-17!GO:0022618;protein-RNA complex assembly;4.10621914662923e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.43564301956637e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;6.93436485277546e-17!GO:0030554;adenyl nucleotide binding;2.60424110762338e-16!GO:0006323;DNA packaging;5.49466022021362e-16!GO:0005635;nuclear envelope;8.5033485362337e-16!GO:0044265;cellular macromolecule catabolic process;9.09033324226785e-16!GO:0031965;nuclear membrane;1.33610536428593e-15!GO:0015630;microtubule cytoskeleton;1.33759057423237e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.61402091161465e-15!GO:0019941;modification-dependent protein catabolic process;2.61606848343e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.61606848343e-15!GO:0042775;organelle ATP synthesis coupled electron transport;2.83956397163149e-15!GO:0042773;ATP synthesis coupled electron transport;2.83956397163149e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.91145260191113e-15!GO:0030964;NADH dehydrogenase complex (quinone);2.98895315610332e-15!GO:0045271;respiratory chain complex I;2.98895315610332e-15!GO:0005747;mitochondrial respiratory chain complex I;2.98895315610332e-15!GO:0005761;mitochondrial ribosome;3.01133935049384e-15!GO:0000313;organellar ribosome;3.01133935049384e-15!GO:0043412;biopolymer modification;3.34415398868089e-15!GO:0044257;cellular protein catabolic process;5.3082075916255e-15!GO:0005794;Golgi apparatus;6.55869566037253e-15!GO:0016887;ATPase activity;6.55869566037253e-15!GO:0009719;response to endogenous stimulus;8.96526368894001e-15!GO:0008135;translation factor activity, nucleic acid binding;9.39630853214978e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.4098570988343e-15!GO:0016192;vesicle-mediated transport;1.19186641283663e-14!GO:0005730;nucleolus;1.62967693550518e-14!GO:0044453;nuclear membrane part;1.79703200571227e-14!GO:0051186;cofactor metabolic process;2.13014184466321e-14!GO:0044432;endoplasmic reticulum part;2.98625015404059e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.53624939617761e-14!GO:0000502;proteasome complex (sensu Eukaryota);6.4184063078911e-14!GO:0042623;ATPase activity, coupled;8.03872687262235e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;8.8504514007032e-14!GO:0000375;RNA splicing, via transesterification reactions;8.8504514007032e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.8504514007032e-14!GO:0005783;endoplasmic reticulum;9.93062779014698e-14!GO:0043285;biopolymer catabolic process;1.19783162599775e-13!GO:0051082;unfolded protein binding;1.46298787947296e-13!GO:0000785;chromatin;2.27435514750305e-13!GO:0006464;protein modification process;2.87600811751026e-13!GO:0006333;chromatin assembly or disassembly;4.10259284299506e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.58768217327286e-13!GO:0009057;macromolecule catabolic process;6.34754145351096e-13!GO:0005643;nuclear pore;7.18855924542791e-13!GO:0044248;cellular catabolic process;8.11723069497239e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.12526047441202e-12!GO:0048193;Golgi vesicle transport;1.70343181422738e-12!GO:0016604;nuclear body;3.33049068090871e-12!GO:0043687;post-translational protein modification;3.72951456289943e-12!GO:0030163;protein catabolic process;3.80642763855401e-12!GO:0065004;protein-DNA complex assembly;4.20210580235285e-12!GO:0009055;electron carrier activity;5.88202473975099e-12!GO:0006605;protein targeting;7.14232394061381e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.7196033694413e-12!GO:0048770;pigment granule;1.00253515870977e-11!GO:0042470;melanosome;1.00253515870977e-11!GO:0006403;RNA localization;1.06925225485378e-11!GO:0006732;coenzyme metabolic process;1.07161351471972e-11!GO:0008134;transcription factor binding;1.22050248897095e-11!GO:0050657;nucleic acid transport;1.28417685003788e-11!GO:0051236;establishment of RNA localization;1.28417685003788e-11!GO:0050658;RNA transport;1.28417685003788e-11!GO:0042254;ribosome biogenesis and assembly;1.47534573719894e-11!GO:0005789;endoplasmic reticulum membrane;1.81416536193004e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.16692936710975e-11!GO:0008565;protein transporter activity;7.10175724912698e-11!GO:0003743;translation initiation factor activity;7.3163942669613e-11!GO:0000775;chromosome, pericentric region;1.0449700207328e-10!GO:0065002;intracellular protein transport across a membrane;1.72786213059354e-10!GO:0046930;pore complex;2.58349453470709e-10!GO:0006413;translational initiation;2.70924621357516e-10!GO:0004386;helicase activity;3.19708443481925e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.21442717256808e-10!GO:0009259;ribonucleotide metabolic process;4.51155021972669e-10!GO:0008639;small protein conjugating enzyme activity;5.1528878374299e-10!GO:0006334;nucleosome assembly;7.27572577743403e-10!GO:0016607;nuclear speck;8.20862021515082e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.36025067883299e-10!GO:0031497;chromatin assembly;8.47871683365519e-10!GO:0006163;purine nucleotide metabolic process;1.00458721070928e-09!GO:0004842;ubiquitin-protein ligase activity;1.1120863737237e-09!GO:0006261;DNA-dependent DNA replication;1.16207114330404e-09!GO:0016568;chromatin modification;1.4012107421748e-09!GO:0051028;mRNA transport;1.40938612152289e-09!GO:0006446;regulation of translational initiation;1.41501058210148e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.66813840800703e-09!GO:0019829;cation-transporting ATPase activity;1.66959862726793e-09!GO:0019787;small conjugating protein ligase activity;2.86524759195769e-09!GO:0015986;ATP synthesis coupled proton transport;3.0549283823423e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.0549283823423e-09!GO:0030532;small nuclear ribonucleoprotein complex;3.26125346310907e-09!GO:0009060;aerobic respiration;3.67183816954252e-09!GO:0009141;nucleoside triphosphate metabolic process;4.91516624205092e-09!GO:0051726;regulation of cell cycle;5.59171999673063e-09!GO:0008026;ATP-dependent helicase activity;5.69411606172415e-09!GO:0051188;cofactor biosynthetic process;6.18650419714251e-09!GO:0006461;protein complex assembly;6.22273815691816e-09!GO:0005819;spindle;7.83957974009912e-09!GO:0006164;purine nucleotide biosynthetic process;8.49232419353843e-09!GO:0009199;ribonucleoside triphosphate metabolic process;9.58454802766531e-09!GO:0045333;cellular respiration;9.8938383263945e-09!GO:0006913;nucleocytoplasmic transport;1.09110568203241e-08!GO:0009150;purine ribonucleotide metabolic process;1.18364627288679e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.18512308222773e-08!GO:0000074;regulation of progression through cell cycle;1.23650749144143e-08!GO:0005874;microtubule;1.34835360266972e-08!GO:0009260;ribonucleotide biosynthetic process;1.48266051745522e-08!GO:0006364;rRNA processing;1.66689147282182e-08!GO:0031982;vesicle;1.71057448400519e-08!GO:0044431;Golgi apparatus part;1.76798974392088e-08!GO:0046034;ATP metabolic process;1.79314231052187e-08!GO:0006399;tRNA metabolic process;1.82012003712263e-08!GO:0003697;single-stranded DNA binding;2.30298465170808e-08!GO:0016881;acid-amino acid ligase activity;2.597086693944e-08!GO:0051169;nuclear transport;2.7050741866462e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.72183037656808e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.72183037656808e-08!GO:0005813;centrosome;3.03257754278447e-08!GO:0031410;cytoplasmic vesicle;3.16627516674201e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.66374557612912e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.66374557612912e-08!GO:0016072;rRNA metabolic process;3.79790916014228e-08!GO:0016740;transferase activity;4.64324815470483e-08!GO:0007005;mitochondrion organization and biogenesis;4.72729306359342e-08!GO:0006752;group transfer coenzyme metabolic process;4.94604991340256e-08!GO:0006754;ATP biosynthetic process;4.97922293527213e-08!GO:0006753;nucleoside phosphate metabolic process;4.97922293527213e-08!GO:0016779;nucleotidyltransferase activity;5.2972194966168e-08!GO:0032446;protein modification by small protein conjugation;5.30463256907105e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.07925804259033e-08!GO:0006793;phosphorus metabolic process;6.27288827771855e-08!GO:0006796;phosphate metabolic process;6.27288827771855e-08!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.43184150230304e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.87746694498672e-08!GO:0009152;purine ribonucleotide biosynthetic process;9.48928685864563e-08!GO:0043566;structure-specific DNA binding;9.6276882195588e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.07716476827119e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.07716476827119e-07!GO:0005815;microtubule organizing center;1.09817840321555e-07!GO:0016567;protein ubiquitination;1.35173040925441e-07!GO:0009108;coenzyme biosynthetic process;1.4408347734906e-07!GO:0045045;secretory pathway;1.49294335413207e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.6949467181406e-07!GO:0006099;tricarboxylic acid cycle;1.84571367918205e-07!GO:0046356;acetyl-CoA catabolic process;1.84571367918205e-07!GO:0031988;membrane-bound vesicle;2.00568917000428e-07!GO:0019222;regulation of metabolic process;2.29166844079339e-07!GO:0006366;transcription from RNA polymerase II promoter;2.46861491355453e-07!GO:0016023;cytoplasmic membrane-bound vesicle;2.90967216493067e-07!GO:0005657;replication fork;2.91830430108632e-07!GO:0051325;interphase;3.21590279934167e-07!GO:0005793;ER-Golgi intermediate compartment;3.39126097029826e-07!GO:0006084;acetyl-CoA metabolic process;3.42413370193864e-07!GO:0009056;catabolic process;4.90087554740535e-07!GO:0043623;cellular protein complex assembly;4.93127143122017e-07!GO:0045259;proton-transporting ATP synthase complex;5.0274699222906e-07!GO:0051329;interphase of mitotic cell cycle;5.03187043395925e-07!GO:0048475;coated membrane;5.46795520266075e-07!GO:0030117;membrane coat;5.46795520266075e-07!GO:0003712;transcription cofactor activity;5.50186435542248e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.69076793194898e-07!GO:0015631;tubulin binding;5.94207249817326e-07!GO:0008094;DNA-dependent ATPase activity;6.32766195561241e-07!GO:0000151;ubiquitin ligase complex;7.87627558307606e-07!GO:0005667;transcription factor complex;8.03049799393903e-07!GO:0009117;nucleotide metabolic process;1.01333972898743e-06!GO:0009109;coenzyme catabolic process;1.16751916140171e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.26426372074473e-06!GO:0007051;spindle organization and biogenesis;1.35949862550586e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.4643376412081e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.4643376412081e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.4643376412081e-06!GO:0007017;microtubule-based process;1.49489950372454e-06!GO:0000245;spliceosome assembly;1.5025343799597e-06!GO:0000075;cell cycle checkpoint;1.50546683542282e-06!GO:0000139;Golgi membrane;2.05520343694282e-06!GO:0051168;nuclear export;2.15329646197026e-06!GO:0005762;mitochondrial large ribosomal subunit;2.3635982932568e-06!GO:0000315;organellar large ribosomal subunit;2.3635982932568e-06!GO:0050794;regulation of cellular process;3.14515474599835e-06!GO:0043038;amino acid activation;3.61195526666924e-06!GO:0006418;tRNA aminoacylation for protein translation;3.61195526666924e-06!GO:0043039;tRNA aminoacylation;3.61195526666924e-06!GO:0006350;transcription;4.83890133589514e-06!GO:0008654;phospholipid biosynthetic process;5.13851552338664e-06!GO:0051187;cofactor catabolic process;5.66735342877328e-06!GO:0016310;phosphorylation;5.9925669198651e-06!GO:0003899;DNA-directed RNA polymerase activity;6.23477755834947e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.56572182208013e-06!GO:0003729;mRNA binding;1.18462885551299e-05!GO:0000776;kinetochore;1.38199819607008e-05!GO:0030120;vesicle coat;1.48602163815822e-05!GO:0030662;coated vesicle membrane;1.48602163815822e-05!GO:0016126;sterol biosynthetic process;1.55833631997768e-05!GO:0005768;endosome;1.62280957912366e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.6407071475876e-05!GO:0017038;protein import;2.05698590607828e-05!GO:0000786;nucleosome;2.50333057624486e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;2.57367067201107e-05!GO:0006613;cotranslational protein targeting to membrane;2.86631282060043e-05!GO:0006302;double-strand break repair;3.10504378857257e-05!GO:0003682;chromatin binding;3.23485491437997e-05!GO:0008610;lipid biosynthetic process;3.6189052354292e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;3.76670658135573e-05!GO:0007010;cytoskeleton organization and biogenesis;3.92530256918051e-05!GO:0031323;regulation of cellular metabolic process;4.02608246680864e-05!GO:0004674;protein serine/threonine kinase activity;4.19019817848609e-05!GO:0000314;organellar small ribosomal subunit;4.88556680710419e-05!GO:0005763;mitochondrial small ribosomal subunit;4.88556680710419e-05!GO:0043021;ribonucleoprotein binding;6.43497963553219e-05!GO:0003724;RNA helicase activity;6.66604181832275e-05!GO:0005839;proteasome core complex (sensu Eukaryota);7.53780191697818e-05!GO:0046467;membrane lipid biosynthetic process;9.5616128289847e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000101349446248666!GO:0008017;microtubule binding;0.000103604544987561!GO:0007059;chromosome segregation;0.000112899063649051!GO:0000059;protein import into nucleus, docking;0.000121486989369566!GO:0006839;mitochondrial transport;0.000124664966195!GO:0016363;nuclear matrix;0.00013074341736486!GO:0005798;Golgi-associated vesicle;0.000137230468066118!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000141167054523736!GO:0031124;mRNA 3'-end processing;0.000146984678416725!GO:0032940;secretion by cell;0.000164715480003679!GO:0009892;negative regulation of metabolic process;0.000168941525324927!GO:0006695;cholesterol biosynthetic process;0.000173102084304289!GO:0032774;RNA biosynthetic process;0.000175952953281312!GO:0051427;hormone receptor binding;0.000180819009319653!GO:0010468;regulation of gene expression;0.00019301828425874!GO:0016787;hydrolase activity;0.000197394423057856!GO:0003684;damaged DNA binding;0.000219565214960811!GO:0006383;transcription from RNA polymerase III promoter;0.000222904392073031!GO:0004298;threonine endopeptidase activity;0.000223012225338332!GO:0006351;transcription, DNA-dependent;0.00022462377272512!GO:0003677;DNA binding;0.000230263027681291!GO:0043681;protein import into mitochondrion;0.000233050511715802!GO:0031252;leading edge;0.000249744277306064!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000252391424071301!GO:0009165;nucleotide biosynthetic process;0.000256368184552442!GO:0004576;oligosaccharyl transferase activity;0.000259725293548911!GO:0044440;endosomal part;0.00026394976353789!GO:0010008;endosome membrane;0.00026394976353789!GO:0016491;oxidoreductase activity;0.000265932070898585!GO:0006612;protein targeting to membrane;0.000272251674463962!GO:0031324;negative regulation of cellular metabolic process;0.000273799216356506!GO:0046474;glycerophospholipid biosynthetic process;0.000296805457993903!GO:0006818;hydrogen transport;0.000296941556742354!GO:0008250;oligosaccharyl transferase complex;0.000311548941904575!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000336640635954958!GO:0015399;primary active transmembrane transporter activity;0.000336640635954958!GO:0005905;coated pit;0.00034081275824011!GO:0015992;proton transport;0.000343131810581302!GO:0035257;nuclear hormone receptor binding;0.000345028810713626!GO:0051246;regulation of protein metabolic process;0.000355781193790762!GO:0003924;GTPase activity;0.000365242719664995!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000383432752739817!GO:0008092;cytoskeletal protein binding;0.000394245503866179!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000422742355901537!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000446752784837084!GO:0000228;nuclear chromosome;0.000450142344723472!GO:0051052;regulation of DNA metabolic process;0.00046886258857645!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000495442499383089!GO:0005876;spindle microtubule;0.000515223312107215!GO:0046489;phosphoinositide biosynthetic process;0.00051604796403647!GO:0006611;protein export from nucleus;0.000520145848827607!GO:0005770;late endosome;0.000520768929056231!GO:0016859;cis-trans isomerase activity;0.000551900381541513!GO:0012501;programmed cell death;0.000582359748010385!GO:0005525;GTP binding;0.000621451691745129!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000624113118213852!GO:0019867;outer membrane;0.000664762544107165!GO:0003690;double-stranded DNA binding;0.000689297467466912!GO:0006915;apoptosis;0.000696442539676776!GO:0030867;rough endoplasmic reticulum membrane;0.000702387810827581!GO:0006405;RNA export from nucleus;0.000718819375496587!GO:0003678;DNA helicase activity;0.000750781657587571!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000754803618725531!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000754803618725531!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000754803618725531!GO:0045454;cell redox homeostasis;0.000762616199236493!GO:0015980;energy derivation by oxidation of organic compounds;0.000803113610518136!GO:0050789;regulation of biological process;0.000867010977620513!GO:0016853;isomerase activity;0.000868469097890491!GO:0030880;RNA polymerase complex;0.00086945008566662!GO:0031968;organelle outer membrane;0.000888070396825226!GO:0008186;RNA-dependent ATPase activity;0.000931042170877283!GO:0007006;mitochondrial membrane organization and biogenesis;0.000940298812973691!GO:0005684;U2-dependent spliceosome;0.000960718652874779!GO:0031123;RNA 3'-end processing;0.000961240505707494!GO:0051920;peroxiredoxin activity;0.000961240505707494!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000972608883083632!GO:0022890;inorganic cation transmembrane transporter activity;0.000974225664940969!GO:0006626;protein targeting to mitochondrion;0.00106476010431467!GO:0006270;DNA replication initiation;0.00107473140978744!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00108195372687553!GO:0015002;heme-copper terminal oxidase activity;0.00108195372687553!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00108195372687553!GO:0004129;cytochrome-c oxidase activity;0.00108195372687553!GO:0005741;mitochondrial outer membrane;0.00108195372687553!GO:0003713;transcription coactivator activity;0.0011008836455724!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00112152355722414!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00112152355722414!GO:0006091;generation of precursor metabolites and energy;0.00120689015766935!GO:0016311;dephosphorylation;0.00120689015766935!GO:0045449;regulation of transcription;0.00120689015766935!GO:0030118;clathrin coat;0.00121258235406129!GO:0004527;exonuclease activity;0.0012218111141231!GO:0006378;mRNA polyadenylation;0.0012218111141231!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00126109213562264!GO:0005875;microtubule associated complex;0.00128135082662263!GO:0032508;DNA duplex unwinding;0.00128772748875673!GO:0032392;DNA geometric change;0.00128772748875673!GO:0043596;nuclear replication fork;0.00130551898288915!GO:0000287;magnesium ion binding;0.00132797136364002!GO:0016564;transcription repressor activity;0.0013709647306637!GO:0018196;peptidyl-asparagine modification;0.00138201173852223!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00138201173852223!GO:0006352;transcription initiation;0.00150872289281363!GO:0007052;mitotic spindle organization and biogenesis;0.00150872289281363!GO:0005788;endoplasmic reticulum lumen;0.00154994135689383!GO:0048487;beta-tubulin binding;0.00167017668939709!GO:0019899;enzyme binding;0.00175762086722294!GO:0000082;G1/S transition of mitotic cell cycle;0.00176667948058227!GO:0006338;chromatin remodeling;0.00176667948058227!GO:0005885;Arp2/3 protein complex;0.00182700666703289!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00188369868245989!GO:0000428;DNA-directed RNA polymerase complex;0.00188369868245989!GO:0016251;general RNA polymerase II transcription factor activity;0.00188454041342719!GO:0006268;DNA unwinding during replication;0.00189990195842024!GO:0007093;mitotic cell cycle checkpoint;0.00190210718712463!GO:0008033;tRNA processing;0.00193423558131448!GO:0004722;protein serine/threonine phosphatase activity;0.0019949411099775!GO:0005637;nuclear inner membrane;0.0019949411099775!GO:0045786;negative regulation of progression through cell cycle;0.00201688909603455!GO:0006310;DNA recombination;0.00202662236406972!GO:0030176;integral to endoplasmic reticulum membrane;0.0020310226556452!GO:0048500;signal recognition particle;0.00203889146547491!GO:0008287;protein serine/threonine phosphatase complex;0.00221406055037685!GO:0031072;heat shock protein binding;0.00222119066227674!GO:0051170;nuclear import;0.00229132894698209!GO:0008219;cell death;0.00232312780669406!GO:0016265;death;0.00232312780669406!GO:0048471;perinuclear region of cytoplasm;0.0023878263288638!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00244803713094441!GO:0043492;ATPase activity, coupled to movement of substances;0.0024619270045718!GO:0004004;ATP-dependent RNA helicase activity;0.00246605250991428!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00260612243154075!GO:0035258;steroid hormone receptor binding;0.0026465702687933!GO:0005773;vacuole;0.00272041577238664!GO:0016481;negative regulation of transcription;0.00276303767596174!GO:0030027;lamellipodium;0.00281660705251606!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00285879910407134!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00309525098962088!GO:0016301;kinase activity;0.00309525098962088!GO:0044452;nucleolar part;0.00316000755663453!GO:0016563;transcription activator activity;0.00325474120279116!GO:0008312;7S RNA binding;0.00327798760774459!GO:0033116;ER-Golgi intermediate compartment membrane;0.0033044149101687!GO:0030137;COPI-coated vesicle;0.00335620126501562!GO:0006650;glycerophospholipid metabolic process;0.00345356748640562!GO:0004721;phosphoprotein phosphatase activity;0.00348220226166529!GO:0003711;transcription elongation regulator activity;0.00356157907079121!GO:0006414;translational elongation;0.00361695359595391!GO:0030521;androgen receptor signaling pathway;0.00365787334031477!GO:0006505;GPI anchor metabolic process;0.00379119383051462!GO:0032259;methylation;0.00399151943637237!GO:0032561;guanyl ribonucleotide binding;0.00407043553405392!GO:0019001;guanyl nucleotide binding;0.00407043553405392!GO:0003746;translation elongation factor activity;0.00410943483227572!GO:0030135;coated vesicle;0.00417438969533624!GO:0006402;mRNA catabolic process;0.00426428239728129!GO:0016791;phosphoric monoester hydrolase activity;0.00438017168130412!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0044848428471708!GO:0045047;protein targeting to ER;0.0044848428471708!GO:0043414;biopolymer methylation;0.00455437523969765!GO:0007088;regulation of mitosis;0.00463089583320205!GO:0005769;early endosome;0.00467776248016408!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00478491240533716!GO:0051252;regulation of RNA metabolic process;0.00481192135232331!GO:0016741;transferase activity, transferring one-carbon groups;0.00483827917651015!GO:0042393;histone binding;0.00496122994016835!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0049729763275257!GO:0006497;protein amino acid lipidation;0.00509467869517624!GO:0005048;signal sequence binding;0.00515888859936633!GO:0006401;RNA catabolic process;0.0051840811245696!GO:0006606;protein import into nucleus;0.0052431383797266!GO:0006892;post-Golgi vesicle-mediated transport;0.00525759873832195!GO:0005669;transcription factor TFIID complex;0.00531979980313356!GO:0006506;GPI anchor biosynthetic process;0.00533412028329485!GO:0000922;spindle pole;0.00534427793963409!GO:0030384;phosphoinositide metabolic process;0.00534427793963409!GO:0003714;transcription corepressor activity;0.00535007707539781!GO:0016272;prefoldin complex;0.0054718165370524!GO:0000049;tRNA binding;0.0057113239698142!GO:0044454;nuclear chromosome part;0.00579596850246101!GO:0006355;regulation of transcription, DNA-dependent;0.00584367666713578!GO:0008168;methyltransferase activity;0.00599611940470601!GO:0030663;COPI coated vesicle membrane;0.00609183463207612!GO:0030126;COPI vesicle coat;0.00609183463207612!GO:0043601;nuclear replisome;0.00633978044499903!GO:0030894;replisome;0.00633978044499903!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00633978044499903!GO:0022406;membrane docking;0.00647179423463922!GO:0048278;vesicle docking;0.00647179423463922!GO:0051087;chaperone binding;0.00708034591253773!GO:0000725;recombinational repair;0.00722586561435443!GO:0000724;double-strand break repair via homologous recombination;0.00722586561435443!GO:0000819;sister chromatid segregation;0.00767235013604346!GO:0006643;membrane lipid metabolic process;0.0078124472184657!GO:0006144;purine base metabolic process;0.00801444523333275!GO:0006891;intra-Golgi vesicle-mediated transport;0.00802312223205463!GO:0005869;dynactin complex;0.00813216451390605!GO:0000339;RNA cap binding;0.00815027624315382!GO:0006595;polyamine metabolic process;0.00835621856818695!GO:0005832;chaperonin-containing T-complex;0.00837158253024045!GO:0000792;heterochromatin;0.00840535250516098!GO:0000070;mitotic sister chromatid segregation;0.00840535250516098!GO:0016584;nucleosome positioning;0.00879437845811566!GO:0006730;one-carbon compound metabolic process;0.00901726921640606!GO:0006470;protein amino acid dephosphorylation;0.00975731573734887!GO:0008139;nuclear localization sequence binding;0.0101932835190745!GO:0003702;RNA polymerase II transcription factor activity;0.0104374212964223!GO:0043069;negative regulation of programmed cell death;0.0104444743238296!GO:0042802;identical protein binding;0.0108082841065284!GO:0008180;signalosome;0.0108572637217655!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.010906431732276!GO:0043631;RNA polyadenylation;0.0109437592232086!GO:0008408;3'-5' exonuclease activity;0.0109760309358555!GO:0005791;rough endoplasmic reticulum;0.0109904020373909!GO:0048523;negative regulation of cellular process;0.0113440107224712!GO:0000726;non-recombinational repair;0.0115728941909731!GO:0042158;lipoprotein biosynthetic process;0.011609438343378!GO:0030145;manganese ion binding;0.0120735874552999!GO:0030133;transport vesicle;0.0121789459624122!GO:0016197;endosome transport;0.0128043761466228!GO:0006904;vesicle docking during exocytosis;0.0128732013572021!GO:0000178;exosome (RNase complex);0.0128732013572021!GO:0044433;cytoplasmic vesicle part;0.0130298447271102!GO:0006284;base-excision repair;0.0130578894116111!GO:0000323;lytic vacuole;0.0131474509252268!GO:0005764;lysosome;0.0131474509252268!GO:0051789;response to protein stimulus;0.0132418739952204!GO:0006986;response to unfolded protein;0.0132418739952204!GO:0043022;ribosome binding;0.0134139724515339!GO:0005663;DNA replication factor C complex;0.0137060305593013!GO:0004003;ATP-dependent DNA helicase activity;0.0139691602473312!GO:0043130;ubiquitin binding;0.0147687484647766!GO:0032182;small conjugating protein binding;0.0147687484647766!GO:0051128;regulation of cellular component organization and biogenesis;0.0148894571342597!GO:0043066;negative regulation of apoptosis;0.0151163561067626!GO:0000910;cytokinesis;0.0153662640408225!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0154746485022244!GO:0030119;AP-type membrane coat adaptor complex;0.0154746485022244!GO:0012506;vesicle membrane;0.0156789022264754!GO:0000118;histone deacetylase complex;0.0157089735912692!GO:0019783;small conjugating protein-specific protease activity;0.0157089735912692!GO:0009116;nucleoside metabolic process;0.0163889598923229!GO:0051287;NAD binding;0.0170034828385249!GO:0030518;steroid hormone receptor signaling pathway;0.017019908788375!GO:0031902;late endosome membrane;0.017469509856272!GO:0006916;anti-apoptosis;0.017985275967969!GO:0008276;protein methyltransferase activity;0.018120306223199!GO:0050178;phenylpyruvate tautomerase activity;0.0181638062598731!GO:0050681;androgen receptor binding;0.018240693615106!GO:0030658;transport vesicle membrane;0.0183714782632521!GO:0030131;clathrin adaptor complex;0.0189764405303207!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0190572441370515!GO:0006367;transcription initiation from RNA polymerase II promoter;0.019305812289373!GO:0007264;small GTPase mediated signal transduction;0.0198219140747009!GO:0006007;glucose catabolic process;0.0200307548595926!GO:0046483;heterocycle metabolic process;0.0201674372843922!GO:0007021;tubulin folding;0.0203000906585109!GO:0004532;exoribonuclease activity;0.0204385577066967!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0204385577066967!GO:0006289;nucleotide-excision repair;0.0206331919614697!GO:0005758;mitochondrial intermembrane space;0.0209542948267773!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0209821858609929!GO:0003730;mRNA 3'-UTR binding;0.0210574783218423!GO:0032984;macromolecular complex disassembly;0.021178540142165!GO:0031371;ubiquitin conjugating enzyme complex;0.0216844523963759!GO:0046128;purine ribonucleoside metabolic process;0.0221391281431491!GO:0042278;purine nucleoside metabolic process;0.0221391281431491!GO:0004843;ubiquitin-specific protease activity;0.0221785935683085!GO:0003727;single-stranded RNA binding;0.0224571230999614!GO:0031577;spindle checkpoint;0.0228714792376109!GO:0006275;regulation of DNA replication;0.0239140410586901!GO:0019206;nucleoside kinase activity;0.024290916435098!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0245332289289038!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0255051467212538!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0255347190292935!GO:0019843;rRNA binding;0.025684992941007!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0257652804207646!GO:0031970;organelle envelope lumen;0.0259015341793836!GO:0040029;regulation of gene expression, epigenetic;0.0259068260082645!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0259068260082645!GO:0004518;nuclease activity;0.0263235076746755!GO:0030496;midbody;0.0267447443563243!GO:0044450;microtubule organizing center part;0.0269520055986748!GO:0016125;sterol metabolic process;0.027224493888447!GO:0006541;glutamine metabolic process;0.0274058740863948!GO:0009066;aspartate family amino acid metabolic process;0.0274408745131493!GO:0051540;metal cluster binding;0.0280257715800995!GO:0051536;iron-sulfur cluster binding;0.0280257715800995!GO:0016044;membrane organization and biogenesis;0.0284530510146686!GO:0016585;chromatin remodeling complex;0.0286829261528796!GO:0006665;sphingolipid metabolic process;0.0286864094903777!GO:0043241;protein complex disassembly;0.0287158392648598!GO:0008536;Ran GTPase binding;0.028796075657219!GO:0004221;ubiquitin thiolesterase activity;0.0289054743247657!GO:0030659;cytoplasmic vesicle membrane;0.0294831050231561!GO:0017134;fibroblast growth factor binding;0.029903161754032!GO:0035267;NuA4 histone acetyltransferase complex;0.0301034059701153!GO:0008637;apoptotic mitochondrial changes;0.0302410720482986!GO:0031570;DNA integrity checkpoint;0.0306876288570966!GO:0005784;translocon complex;0.0312935187677339!GO:0008022;protein C-terminus binding;0.031502530581558!GO:0000152;nuclear ubiquitin ligase complex;0.0324317884350558!GO:0006376;mRNA splice site selection;0.0327529554950628!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0327529554950628!GO:0006672;ceramide metabolic process;0.0327551553422122!GO:0032200;telomere organization and biogenesis;0.0327551553422122!GO:0000723;telomere maintenance;0.0327551553422122!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0327551553422122!GO:0000793;condensed chromosome;0.0329175529648033!GO:0030660;Golgi-associated vesicle membrane;0.0329175529648033!GO:0043284;biopolymer biosynthetic process;0.0332071743411815!GO:0000096;sulfur amino acid metabolic process;0.0332651037213968!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0335683471332608!GO:0045039;protein import into mitochondrial inner membrane;0.0335683471332608!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0335683471332608!GO:0010257;NADH dehydrogenase complex assembly;0.0335683471332608!GO:0033108;mitochondrial respiratory chain complex assembly;0.0335683471332608!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0341125313291029!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0341271278694128!GO:0009112;nucleobase metabolic process;0.0341271278694128!GO:0043433;negative regulation of transcription factor activity;0.0348780020727886!GO:0031529;ruffle organization and biogenesis;0.0350883271564013!GO:0047485;protein N-terminus binding;0.0352614952211381!GO:0016579;protein deubiquitination;0.0354193317056322!GO:0030911;TPR domain binding;0.0355144979070967!GO:0042981;regulation of apoptosis;0.037018887561671!GO:0043624;cellular protein complex disassembly;0.0375553779579972!GO:0003923;GPI-anchor transamidase activity;0.0378628181544549!GO:0016255;attachment of GPI anchor to protein;0.0378628181544549!GO:0042765;GPI-anchor transamidase complex;0.0378628181544549!GO:0043067;regulation of programmed cell death;0.0381925400470219!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0382563296556735!GO:0055083;monovalent inorganic anion homeostasis;0.0382563296556735!GO:0055064;chloride ion homeostasis;0.0382563296556735!GO:0030644;cellular chloride ion homeostasis;0.0382563296556735!GO:0006354;RNA elongation;0.0382563296556735!GO:0044438;microbody part;0.0385715122382353!GO:0044439;peroxisomal part;0.0385715122382353!GO:0007004;telomere maintenance via telomerase;0.0385759689960063!GO:0051539;4 iron, 4 sulfur cluster binding;0.0386979687593191!GO:0016569;covalent chromatin modification;0.0387551530427223!GO:0031628;opioid receptor binding;0.0388050630864891!GO:0031852;mu-type opioid receptor binding;0.0388050630864891!GO:0030132;clathrin coat of coated pit;0.0388050630864891!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0388921614288902!GO:0000209;protein polyubiquitination;0.0391758751186911!GO:0051452;cellular pH reduction;0.0392198372585101!GO:0051453;regulation of cellular pH;0.0392198372585101!GO:0045851;pH reduction;0.0392198372585101!GO:0043189;H4/H2A histone acetyltransferase complex;0.0392198372585101!GO:0006406;mRNA export from nucleus;0.0395369547755902!GO:0007018;microtubule-based movement;0.03975104464832!GO:0042769;DNA damage response, detection of DNA damage;0.03975104464832!GO:0016790;thiolester hydrolase activity;0.039793423340352!GO:0004185;serine carboxypeptidase activity;0.0399342485744742!GO:0030134;ER to Golgi transport vesicle;0.0399342485744742!GO:0006220;pyrimidine nucleotide metabolic process;0.0399342485744742!GO:0043488;regulation of mRNA stability;0.0399342485744742!GO:0043487;regulation of RNA stability;0.0399342485744742!GO:0005652;nuclear lamina;0.0404358664356975!GO:0008538;proteasome activator activity;0.0405385885333237!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.040611647739036!GO:0004523;ribonuclease H activity;0.0409779317940133!GO:0030522;intracellular receptor-mediated signaling pathway;0.0412168397066196!GO:0016408;C-acyltransferase activity;0.0412712642321946!GO:0030742;GTP-dependent protein binding;0.0415375055899809!GO:0033170;DNA-protein loading ATPase activity;0.0430228005513815!GO:0003689;DNA clamp loader activity;0.0430228005513815!GO:0017130;poly(rC) binding;0.0431442553552135!GO:0051320;S phase;0.0437294724040426!GO:0007050;cell cycle arrest;0.0438058934392615!GO:0019238;cyclohydrolase activity;0.0438431064975186!GO:0051053;negative regulation of DNA metabolic process;0.0441547861344048!GO:0000731;DNA synthesis during DNA repair;0.0442026470658738!GO:0022411;cellular component disassembly;0.0442026470658738!GO:0007040;lysosome organization and biogenesis;0.0443003567552821!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0444632544312101!GO:0001832;blastocyst growth;0.0449285483466006!GO:0006301;postreplication repair;0.0449285483466006!GO:0000781;chromosome, telomeric region;0.0449903001687293!GO:0005871;kinesin complex;0.0452713815635976!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0457408095451685!GO:0000084;S phase of mitotic cell cycle;0.0465483476525823!GO:0030149;sphingolipid catabolic process;0.0467169687399058!GO:0045892;negative regulation of transcription, DNA-dependent;0.0468360985856772!GO:0042770;DNA damage response, signal transduction;0.0472292266073906!GO:0045936;negative regulation of phosphate metabolic process;0.0473831076060601!GO:0035035;histone acetyltransferase binding;0.0487393430211874!GO:0006516;glycoprotein catabolic process;0.0492813927763257!GO:0046519;sphingoid metabolic process;0.0493963256447702 | |||
|sample_id=10800 | |sample_id=10800 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=cervix | |sample_tissue=cervix | ||
|top_motifs=SOX{8,9,10}:2.67140496793;BREu{core}:2.64330386909;TFDP1:2.53923686829;NFY{A,B,C}:2.47087395195;LMO2:2.33791059256;SNAI1..3:1.99993315932;NKX2-3_NKX2-5:1.98611150017;GFI1:1.97268602278;ZEB1:1.88942463557;E2F1..5:1.83634874443;PBX1:1.66478245738;FOXM1:1.64961779119;NRF1:1.6395351992;XCPE1{core}:1.61818090852;VSX1,2:1.57404760582;ELK1,4_GABP{A,B1}:1.48995501444;ZNF143:1.46440801678;T:1.37115257605;DBP:1.2952265449;SOX2:1.28707086289;POU1F1:1.22947464263;SOX17:1.21914486858;PRRX1,2:1.19969820358;FOXA2:1.18547200175;HOXA9_MEIS1:1.13023413521;FOXQ1:1.12697202121;ADNP_IRX_SIX_ZHX:1.12149011694;MTE{core}:1.08202272116;FOXL1:1.06641349131;HOX{A6,A7,B6,B7}:1.04435903459;ATF4:1.03443658771;POU6F1:1.00260028088;MYOD1:1.00185887378;FOX{F1,F2,J1}:0.999358383964;ZFP161:0.983268407663;HIC1:0.971980601086;ZIC1..3:0.945159822711;bHLH_family:0.94004374315;TFAP2B:0.928817378468;TEF:0.917861735873;NANOG:0.87371771951;PAX8:0.840095715132;EGR1..3:0.829218476673;PAX3,7:0.822698519967;MED-1{core}:0.775210489429;HOX{A4,D4}:0.767149778062;SP1:0.727366142933;OCT4_SOX2{dimer}:0.725714657229;ZNF384:0.72147498364;SREBF1,2:0.691916034461;LHX3,4:0.652864260791;POU2F1..3:0.645702557507;FOXP1:0.633580633723;ATF5_CREB3:0.601824059219;PATZ1:0.59942948769;PDX1:0.596235942536;PPARG:0.55141019175;RFX1:0.550077005341;JUN:0.531139545901;YY1:0.520137024733;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.514160359616;NKX3-1:0.486405125964;CREB1:0.475134465201;ARID5B:0.454061830794;POU5F1:0.431754340376;NR5A1,2:0.411222406397;REST:0.39062784572;HBP1_HMGB_SSRP1_UBTF:0.38846707517;PAX5:0.387654926727;ZNF423:0.372854093376;FOXD3:0.366058237397;MYB:0.329974100052;IKZF2:0.312775388519;LEF1_TCF7_TCF7L1,2:0.309362433246;NHLH1,2:0.238838841434;NKX6-1,2:0.234384892534;MTF1:0.229158583167;ONECUT1,2:0.227341482611;PITX1..3:0.186759474492;PAX4:0.185127067742;PAX6:0.173053214127;EN1,2:0.155101296239;EVI1:0.0997984587943;CUX2:0.0844510285779;PAX1,9:0.0813105922665;AHR_ARNT_ARNT2:0.0808587102969;STAT5{A,B}:0.05130320779;GATA6:0.0489544112163;FOXN1:-0.00993956789664;FOX{D1,D2}:-0.0434090882182;HNF1A:-0.0444294879226;ZBTB16:-0.0478920822389;NKX2-1,4:-0.0531792686741;TOPORS:-0.0574580942554;RBPJ:-0.0586518696898;FOX{I1,J2}:-0.0618149956084;CRX:-0.0645961902801;TBX4,5:-0.0730062238267;FOXP3:-0.0748739340167;MEF2{A,B,C,D}:-0.0775964353798;TGIF1:-0.0799814905359;HNF4A_NR2F1,2:-0.118238125358;AIRE:-0.130714549625;HAND1,2:-0.138703487977;ALX1:-0.149166017727;RFX2..5_RFXANK_RFXAP:-0.159497878413;NKX2-2,8:-0.163252019796;GATA4:-0.18998460393;MAZ:-0.207576901227;MZF1:-0.221473404399;TP53:-0.239987823848;ZBTB6:-0.241218943026;GTF2I:-0.244800693609;MYFfamily:-0.24597711659;ESR1:-0.277105055481;CDX1,2,4:-0.290119352812;FOXO1,3,4:-0.311795307157;ATF2:-0.324962007183;UFEwm:-0.33634259529;NKX3-2:-0.351648171318;GFI1B:-0.358648507748;SOX5:-0.378563354526;HOX{A5,B5}:-0.400686892875;AR:-0.433896247525;DMAP1_NCOR{1,2}_SMARC:-0.434493147451;FOSL2:-0.450160409586;SPIB:-0.452753221595;IKZF1:-0.476443674758;NFKB1_REL_RELA:-0.489539393897;BPTF:-0.523772051901;TFAP2{A,C}:-0.534322544682;RORA:-0.544530250028;HLF:-0.563832696438;SPI1:-0.565150493113;NR6A1:-0.569829774006;TBP:-0.602062576418;HES1:-0.625866890241;NFIX:-0.632639967693;FOS_FOS{B,L1}_JUN{B,D}:-0.637366170209;KLF4:-0.6454343905;CDC5L:-0.658442880088;MAFB:-0.679435474926;BACH2:-0.695794623349;STAT1,3:-0.696647363835;EP300:-0.709168064948;IRF7:-0.710591368188;HIF1A:-0.786081491432;RUNX1..3:-0.792690649746;NFE2L2:-0.794399738298;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.832801704169;PAX2:-0.847179559396;CEBPA,B_DDIT3:-0.856679454127;GTF2A1,2:-0.857089246676;XBP1:-0.871844602807;NFIL3:-0.882799054871;MYBL2:-0.890503503009;ELF1,2,4:-0.902190246748;ATF6:-0.905232005904;ZNF148:-0.918281671128;NFE2L1:-0.920164938722;TAL1_TCF{3,4,12}:-0.936495353917;RREB1:-0.938308074785;TFCP2:-0.94340651918;HMGA1,2:-0.951554939299;ETS1,2:-0.957303954484;EBF1:-0.97011640747;NFE2:-0.973442642623;HMX1:-0.976739124415;NANOG{mouse}:-1.03645925038;PRDM1:-1.09060525466;NR3C1:-1.09291080378;SRF:-1.12842251494;ESRRA:-1.14171729742;POU3F1..4:-1.14477636549;HSF1,2:-1.1604404241;TFAP4:-1.18854119708;GCM1,2:-1.20044986229;TEAD1:-1.21992095601;ALX4:-1.22225129893;GZF1:-1.22362050297;NR1H4:-1.22683640135;TLX1..3_NFIC{dimer}:-1.24565309149;IRF1,2:-1.24641677067;NFATC1..3:-1.51289481132;STAT2,4,6:-1.54817938568;GLI1..3:-1.68048099351;TLX2:-1.69156938676;ZNF238:-1.70155330391;SMAD1..7,9:-1.73209262834;RXR{A,B,G}:-1.84381301906;SPZ1:-1.92066776537;RXRA_VDR{dimer}:-1.92689959449 | |top_motifs=SOX{8,9,10}:2.67140496793;BREu{core}:2.64330386909;TFDP1:2.53923686829;NFY{A,B,C}:2.47087395195;LMO2:2.33791059256;SNAI1..3:1.99993315932;NKX2-3_NKX2-5:1.98611150017;GFI1:1.97268602278;ZEB1:1.88942463557;E2F1..5:1.83634874443;PBX1:1.66478245738;FOXM1:1.64961779119;NRF1:1.6395351992;XCPE1{core}:1.61818090852;VSX1,2:1.57404760582;ELK1,4_GABP{A,B1}:1.48995501444;ZNF143:1.46440801678;T:1.37115257605;DBP:1.2952265449;SOX2:1.28707086289;POU1F1:1.22947464263;SOX17:1.21914486858;PRRX1,2:1.19969820358;FOXA2:1.18547200175;HOXA9_MEIS1:1.13023413521;FOXQ1:1.12697202121;ADNP_IRX_SIX_ZHX:1.12149011694;MTE{core}:1.08202272116;FOXL1:1.06641349131;HOX{A6,A7,B6,B7}:1.04435903459;ATF4:1.03443658771;POU6F1:1.00260028088;MYOD1:1.00185887378;FOX{F1,F2,J1}:0.999358383964;ZFP161:0.983268407663;HIC1:0.971980601086;ZIC1..3:0.945159822711;bHLH_family:0.94004374315;TFAP2B:0.928817378468;TEF:0.917861735873;NANOG:0.87371771951;PAX8:0.840095715132;EGR1..3:0.829218476673;PAX3,7:0.822698519967;MED-1{core}:0.775210489429;HOX{A4,D4}:0.767149778062;SP1:0.727366142933;OCT4_SOX2{dimer}:0.725714657229;ZNF384:0.72147498364;SREBF1,2:0.691916034461;LHX3,4:0.652864260791;POU2F1..3:0.645702557507;FOXP1:0.633580633723;ATF5_CREB3:0.601824059219;PATZ1:0.59942948769;PDX1:0.596235942536;PPARG:0.55141019175;RFX1:0.550077005341;JUN:0.531139545901;YY1:0.520137024733;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.514160359616;NKX3-1:0.486405125964;CREB1:0.475134465201;ARID5B:0.454061830794;POU5F1:0.431754340376;NR5A1,2:0.411222406397;REST:0.39062784572;HBP1_HMGB_SSRP1_UBTF:0.38846707517;PAX5:0.387654926727;ZNF423:0.372854093376;FOXD3:0.366058237397;MYB:0.329974100052;IKZF2:0.312775388519;LEF1_TCF7_TCF7L1,2:0.309362433246;NHLH1,2:0.238838841434;NKX6-1,2:0.234384892534;MTF1:0.229158583167;ONECUT1,2:0.227341482611;PITX1..3:0.186759474492;PAX4:0.185127067742;PAX6:0.173053214127;EN1,2:0.155101296239;EVI1:0.0997984587943;CUX2:0.0844510285779;PAX1,9:0.0813105922665;AHR_ARNT_ARNT2:0.0808587102969;STAT5{A,B}:0.05130320779;GATA6:0.0489544112163;FOXN1:-0.00993956789664;FOX{D1,D2}:-0.0434090882182;HNF1A:-0.0444294879226;ZBTB16:-0.0478920822389;NKX2-1,4:-0.0531792686741;TOPORS:-0.0574580942554;RBPJ:-0.0586518696898;FOX{I1,J2}:-0.0618149956084;CRX:-0.0645961902801;TBX4,5:-0.0730062238267;FOXP3:-0.0748739340167;MEF2{A,B,C,D}:-0.0775964353798;TGIF1:-0.0799814905359;HNF4A_NR2F1,2:-0.118238125358;AIRE:-0.130714549625;HAND1,2:-0.138703487977;ALX1:-0.149166017727;RFX2..5_RFXANK_RFXAP:-0.159497878413;NKX2-2,8:-0.163252019796;GATA4:-0.18998460393;MAZ:-0.207576901227;MZF1:-0.221473404399;TP53:-0.239987823848;ZBTB6:-0.241218943026;GTF2I:-0.244800693609;MYFfamily:-0.24597711659;ESR1:-0.277105055481;CDX1,2,4:-0.290119352812;FOXO1,3,4:-0.311795307157;ATF2:-0.324962007183;UFEwm:-0.33634259529;NKX3-2:-0.351648171318;GFI1B:-0.358648507748;SOX5:-0.378563354526;HOX{A5,B5}:-0.400686892875;AR:-0.433896247525;DMAP1_NCOR{1,2}_SMARC:-0.434493147451;FOSL2:-0.450160409586;SPIB:-0.452753221595;IKZF1:-0.476443674758;NFKB1_REL_RELA:-0.489539393897;BPTF:-0.523772051901;TFAP2{A,C}:-0.534322544682;RORA:-0.544530250028;HLF:-0.563832696438;SPI1:-0.565150493113;NR6A1:-0.569829774006;TBP:-0.602062576418;HES1:-0.625866890241;NFIX:-0.632639967693;FOS_FOS{B,L1}_JUN{B,D}:-0.637366170209;KLF4:-0.6454343905;CDC5L:-0.658442880088;MAFB:-0.679435474926;BACH2:-0.695794623349;STAT1,3:-0.696647363835;EP300:-0.709168064948;IRF7:-0.710591368188;HIF1A:-0.786081491432;RUNX1..3:-0.792690649746;NFE2L2:-0.794399738298;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.832801704169;PAX2:-0.847179559396;CEBPA,B_DDIT3:-0.856679454127;GTF2A1,2:-0.857089246676;XBP1:-0.871844602807;NFIL3:-0.882799054871;MYBL2:-0.890503503009;ELF1,2,4:-0.902190246748;ATF6:-0.905232005904;ZNF148:-0.918281671128;NFE2L1:-0.920164938722;TAL1_TCF{3,4,12}:-0.936495353917;RREB1:-0.938308074785;TFCP2:-0.94340651918;HMGA1,2:-0.951554939299;ETS1,2:-0.957303954484;EBF1:-0.97011640747;NFE2:-0.973442642623;HMX1:-0.976739124415;NANOG{mouse}:-1.03645925038;PRDM1:-1.09060525466;NR3C1:-1.09291080378;SRF:-1.12842251494;ESRRA:-1.14171729742;POU3F1..4:-1.14477636549;HSF1,2:-1.1604404241;TFAP4:-1.18854119708;GCM1,2:-1.20044986229;TEAD1:-1.21992095601;ALX4:-1.22225129893;GZF1:-1.22362050297;NR1H4:-1.22683640135;TLX1..3_NFIC{dimer}:-1.24565309149;IRF1,2:-1.24641677067;NFATC1..3:-1.51289481132;STAT2,4,6:-1.54817938568;GLI1..3:-1.68048099351;TLX2:-1.69156938676;ZNF238:-1.70155330391;SMAD1..7,9:-1.73209262834;RXR{A,B,G}:-1.84381301906;SPZ1:-1.92066776537;RXRA_VDR{dimer}:-1.92689959449 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10800-110I8;search_select_hide=table117:FF:10800-110I8 | |||
}} | }} | ||
Latest revision as of 15:05, 3 June 2020
| Name: | small cell cervical cancer cell line:HCSC-1 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11885 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11885
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11885
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.166 |
| 10 | 10 | 0.194 |
| 100 | 100 | 0.989 |
| 101 | 101 | 0.288 |
| 102 | 102 | 0.504 |
| 103 | 103 | 0.0632 |
| 104 | 104 | 0.583 |
| 105 | 105 | 0.615 |
| 106 | 106 | 0.0168 |
| 107 | 107 | 0.131 |
| 108 | 108 | 0.909 |
| 109 | 109 | 0.223 |
| 11 | 11 | 0.13 |
| 110 | 110 | 0.229 |
| 111 | 111 | 0.274 |
| 112 | 112 | 0.0495 |
| 113 | 113 | 0.299 |
| 114 | 114 | 0.0139 |
| 115 | 115 | 0.624 |
| 116 | 116 | 0.591 |
| 117 | 117 | 0.152 |
| 118 | 118 | 0.454 |
| 119 | 119 | 0.19 |
| 12 | 12 | 0.963 |
| 120 | 120 | 0.637 |
| 121 | 121 | 0.876 |
| 122 | 122 | 0.52 |
| 123 | 123 | 0.511 |
| 124 | 124 | 0.367 |
| 125 | 125 | 0.627 |
| 126 | 126 | 0.525 |
| 127 | 127 | 0.148 |
| 128 | 128 | 0.136 |
| 129 | 129 | 0.563 |
| 13 | 13 | 0.101 |
| 130 | 130 | 0.812 |
| 131 | 131 | 0.387 |
| 132 | 132 | 0.623 |
| 133 | 133 | 0.0249 |
| 134 | 134 | 0.751 |
| 135 | 135 | 0.00171 |
| 136 | 136 | 0.197 |
| 137 | 137 | 0.28 |
| 138 | 138 | 0.171 |
| 139 | 139 | 0.0558 |
| 14 | 14 | 0.617 |
| 140 | 140 | 0.187 |
| 141 | 141 | 0.76 |
| 142 | 142 | 0.631 |
| 143 | 143 | 0.0128 |
| 144 | 144 | 0.516 |
| 145 | 145 | 0.175 |
| 146 | 146 | 0.669 |
| 147 | 147 | 0.692 |
| 148 | 148 | 0.118 |
| 149 | 149 | 0.0183 |
| 15 | 15 | 0.188 |
| 150 | 150 | 0.576 |
| 151 | 151 | 0.289 |
| 152 | 152 | 0.116 |
| 153 | 153 | 0.245 |
| 154 | 154 | 0.684 |
| 155 | 155 | 0.628 |
| 156 | 156 | 0.767 |
| 157 | 157 | 0.674 |
| 158 | 158 | 0.561 |
| 159 | 159 | 0.617 |
| 16 | 16 | 0.253 |
| 160 | 160 | 0.12 |
| 161 | 161 | 0.199 |
| 162 | 162 | 0.97 |
| 163 | 163 | 0.663 |
| 164 | 164 | 0.343 |
| 165 | 165 | 0.462 |
| 166 | 166 | 0.168 |
| 167 | 167 | 0.86 |
| 168 | 168 | 0.0792 |
| 169 | 169 | 0.00453 |
| 17 | 17 | 0.158 |
| 18 | 18 | 0.101 |
| 19 | 19 | 0.0843 |
| 2 | 2 | 0.5 |
| 20 | 20 | 0.592 |
| 21 | 21 | 0.186 |
| 22 | 22 | 0.0999 |
| 23 | 23 | 0.00964 |
| 24 | 24 | 0.122 |
| 25 | 25 | 0.77 |
| 26 | 26 | 0.208 |
| 27 | 27 | 0.276 |
| 28 | 28 | 0.807 |
| 29 | 29 | 0.342 |
| 3 | 3 | 0.0518 |
| 30 | 30 | 0.646 |
| 31 | 31 | 0.635 |
| 32 | 32 | 0.0217 |
| 33 | 33 | 0.549 |
| 34 | 34 | 0.264 |
| 35 | 35 | 0.173 |
| 36 | 36 | 0.134 |
| 37 | 37 | 0.113 |
| 38 | 38 | 0.193 |
| 39 | 39 | 0.226 |
| 4 | 4 | 0.887 |
| 40 | 40 | 0.416 |
| 41 | 41 | 0.519 |
| 42 | 42 | 0.184 |
| 43 | 43 | 0.0997 |
| 44 | 44 | 0.354 |
| 45 | 45 | 0.444 |
| 46 | 46 | 0.172 |
| 47 | 47 | 0.373 |
| 48 | 48 | 0.287 |
| 49 | 49 | 0.171 |
| 5 | 5 | 0.13 |
| 50 | 50 | 0.388 |
| 51 | 51 | 0.141 |
| 52 | 52 | 0.226 |
| 53 | 53 | 0.375 |
| 54 | 54 | 0.215 |
| 55 | 55 | 0.0476 |
| 56 | 56 | 0.507 |
| 57 | 57 | 0.292 |
| 58 | 58 | 0.243 |
| 59 | 59 | 0.0328 |
| 6 | 6 | 0.445 |
| 60 | 60 | 0.0233 |
| 61 | 61 | 0.382 |
| 62 | 62 | 0.0772 |
| 63 | 63 | 0.0717 |
| 64 | 64 | 0.602 |
| 65 | 65 | 0.0429 |
| 66 | 66 | 0.163 |
| 67 | 67 | 0.862 |
| 68 | 68 | 0.571 |
| 69 | 69 | 0.743 |
| 7 | 7 | 0.296 |
| 70 | 70 | 0.00444 |
| 71 | 71 | 0.104 |
| 72 | 72 | 0.189 |
| 73 | 73 | 0.152 |
| 74 | 74 | 0.133 |
| 75 | 75 | 0.15 |
| 76 | 76 | 0.709 |
| 77 | 77 | 0.126 |
| 78 | 78 | 0.358 |
| 79 | 79 | 0.117 |
| 8 | 8 | 0.155 |
| 80 | 80 | 0.0428 |
| 81 | 81 | 0.178 |
| 82 | 82 | 0.00936 |
| 83 | 83 | 0.254 |
| 84 | 84 | 0.835 |
| 85 | 85 | 0.00344 |
| 86 | 86 | 0.305 |
| 87 | 87 | 0.518 |
| 88 | 88 | 0.702 |
| 89 | 89 | 0.132 |
| 9 | 9 | 0.15 |
| 90 | 90 | 0.0373 |
| 91 | 91 | 0.18 |
| 92 | 92 | 0.0886 |
| 93 | 93 | 0.0928 |
| 94 | 94 | 0.175 |
| 95 | 95 | 0.457 |
| 96 | 96 | 0.0766 |
| 97 | 97 | 0.742 |
| 98 | 98 | 0.4 |
| 99 | 99 | 0.493 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11885
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101967 cervical cancer cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
120 (female reproductive organ cancer)
4362 (cervical cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000002 (uterine cervix)
0000995 (uterus)
0003134 (female reproductive organ)
0001560 (neck of organ)
0005156 (reproductive structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101967 (cervical cancer cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)
