FF:13425-144D5: Difference between revisions

Latest revision as of 18:58, 4 June 2020

Name:	iPS differentiation to neuron, control donor C11-CRL2429
Species:	Human (Homo sapiens)
Library ID:	CNhs13822
Sample type:	time courses
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	male
age	newborn
cell type	fibroblast-derived iPS
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005689

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13822		CAGE		DRX008603		DRR009475

Accession ID Hg19

Library id		BAM		CTSS
CNhs13822		DRZ000900		DRZ002285

Accession ID Hg38

Library id		BAM		CTSS
CNhs13822		DRZ012250		DRZ013635

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.105
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.585
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0435
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0.0647
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0.672
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0833
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.209
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.121
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0353
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.073
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.0647
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0632
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0.121
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.735
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.0232
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.686
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0.0647
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0647
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.607
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0647
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.556
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0647
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0.708
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13822

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00348
MA0003.1	MA0003.1	0.0666
MA0004.1	MA0004.1	0.91
MA0006.1	MA0006.1	0.317
MA0007.1	MA0007.1	0.988
MA0009.1	MA0009.1	0.985
MA0014.1	MA0014.1	0.133
MA0017.1	MA0017.1	0.0544
MA0018.2	MA0018.2	0.0773
MA0019.1	MA0019.1	0.911
MA0024.1	MA0024.1	1.9446e-5
MA0025.1	MA0025.1	0.305
MA0027.1	MA0027.1	0.341
MA0028.1	MA0028.1	0.11
MA0029.1	MA0029.1	0.733
MA0030.1	MA0030.1	0.273
MA0031.1	MA0031.1	0.188
MA0035.2	MA0035.2	0.994
MA0038.1	MA0038.1	0.00281
MA0039.2	MA0039.2	0.0148
MA0040.1	MA0040.1	0.336
MA0041.1	MA0041.1	0.0718
MA0042.1	MA0042.1	0.498
MA0043.1	MA0043.1	0.249
MA0046.1	MA0046.1	0.17
MA0047.2	MA0047.2	0.0848
MA0048.1	MA0048.1	0.333
MA0050.1	MA0050.1	8.89454e-6
MA0051.1	MA0051.1	0.00229
MA0052.1	MA0052.1	0.163
MA0055.1	MA0055.1	0.173
MA0057.1	MA0057.1	0.361
MA0058.1	MA0058.1	0.92
MA0059.1	MA0059.1	0.988
MA0060.1	MA0060.1	7.73118e-15
MA0061.1	MA0061.1	0.00424
MA0062.2	MA0062.2	0.686
MA0065.2	MA0065.2	0.928
MA0066.1	MA0066.1	0.263
MA0067.1	MA0067.1	0.239
MA0068.1	MA0068.1	0.0047
MA0069.1	MA0069.1	0.652
MA0070.1	MA0070.1	0.282
MA0071.1	MA0071.1	0.829
MA0072.1	MA0072.1	0.999
MA0073.1	MA0073.1	0.965
MA0074.1	MA0074.1	0.657
MA0076.1	MA0076.1	0.272
MA0077.1	MA0077.1	0.0993
MA0078.1	MA0078.1	0.901
MA0079.2	MA0079.2	0.401
MA0080.2	MA0080.2	7.98192e-12
MA0081.1	MA0081.1	0.0627
MA0083.1	MA0083.1	0.0546
MA0084.1	MA0084.1	0.715
MA0087.1	MA0087.1	0.607
MA0088.1	MA0088.1	0.739
MA0090.1	MA0090.1	0.974
MA0091.1	MA0091.1	0.0236
MA0092.1	MA0092.1	0.16
MA0093.1	MA0093.1	0.78
MA0099.2	MA0099.2	4.87729e-14
MA0100.1	MA0100.1	0.978
MA0101.1	MA0101.1	0.0661
MA0102.2	MA0102.2	0.00286
MA0103.1	MA0103.1	0.0819
MA0104.2	MA0104.2	0.844
MA0105.1	MA0105.1	0.00119
MA0106.1	MA0106.1	0.629
MA0107.1	MA0107.1	0.0158
MA0108.2	MA0108.2	1.31306e-6
MA0111.1	MA0111.1	0.859
MA0112.2	MA0112.2	3.67939e-5
MA0113.1	MA0113.1	0.00991
MA0114.1	MA0114.1	0.499
MA0115.1	MA0115.1	0.672
MA0116.1	MA0116.1	0.0145
MA0117.1	MA0117.1	0.82
MA0119.1	MA0119.1	0.00456
MA0122.1	MA0122.1	0.721
MA0124.1	MA0124.1	0.587
MA0125.1	MA0125.1	0.183
MA0131.1	MA0131.1	0.565
MA0135.1	MA0135.1	0.924
MA0136.1	MA0136.1	1.81175e-9
MA0137.2	MA0137.2	0.0911
MA0138.2	MA0138.2	0.73
MA0139.1	MA0139.1	0.402
MA0140.1	MA0140.1	0.349
MA0141.1	MA0141.1	0.477
MA0142.1	MA0142.1	1.27152e-13
MA0143.1	MA0143.1	6.02631e-6
MA0144.1	MA0144.1	0.0334
MA0145.1	MA0145.1	0.307
MA0146.1	MA0146.1	0.093
MA0147.1	MA0147.1	0.848
MA0148.1	MA0148.1	0.0567
MA0149.1	MA0149.1	0.342
MA0150.1	MA0150.1	3.80006e-4
MA0152.1	MA0152.1	0.467
MA0153.1	MA0153.1	0.686
MA0154.1	MA0154.1	0.0164
MA0155.1	MA0155.1	0.891
MA0156.1	MA0156.1	7.61585e-5
MA0157.1	MA0157.1	0.152
MA0159.1	MA0159.1	0.107
MA0160.1	MA0160.1	0.17
MA0162.1	MA0162.1	0.826
MA0163.1	MA0163.1	9.87571e-4
MA0164.1	MA0164.1	0.861
MA0258.1	MA0258.1	0.0215
MA0259.1	MA0259.1	0.96

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13822

Novel motif	Logo	P-value
1	1	0.102
10	10	0.15
100	100	0.494
101	101	0.638
102	102	0.635
103	103	0.0403
104	104	0.601
105	105	0.232
106	106	0.0499
107	107	0.557
108	108	0.966
109	109	0.254
11	11	0.191
110	110	0.307
111	111	0.0256
112	112	0.214
113	113	0.141
114	114	0.0237
115	115	0.493
116	116	0.84
117	117	0.33
118	118	0.647
119	119	0.209
12	12	0.907
120	120	0.91
121	121	0.451
122	122	0.787
123	123	0.796
124	124	0.223
125	125	0.787
126	126	0.484
127	127	0.308
128	128	0.372
129	129	0.252
13	13	0.882
130	130	0.42
131	131	0.692
132	132	0.818
133	133	0.069
134	134	0.481
135	135	7.36777e-4
136	136	0.0566
137	137	0.44
138	138	0.207
139	139	0.0182
14	14	0.816
140	140	0.0777
141	141	0.36
142	142	0.301
143	143	0.00566
144	144	0.629
145	145	0.553
146	146	0.51
147	147	0.709
148	148	0.0198
149	149	0.00956
15	15	0.0911
150	150	0.64
151	151	0.0644
152	152	0.782
153	153	0.169
154	154	0.534
155	155	0.854
156	156	0.414
157	157	0.728
158	158	0.169
159	159	0.167
16	16	0.384
160	160	0.444
161	161	0.884
162	162	0.536
163	163	0.643
164	164	0.211
165	165	0.664
166	166	0.576
167	167	0.094
168	168	0.25
169	169	0.00131
17	17	0.14
18	18	0.137
19	19	0.18
2	2	0.348
20	20	0.864
21	21	0.785
22	22	0.0889
23	23	0.0141
24	24	0.614
25	25	0.458
26	26	0.834
27	27	0.243
28	28	0.929
29	29	0.674
3	3	0.138
30	30	0.891
31	31	0.798
32	32	0.0469
33	33	0.837
34	34	0.52
35	35	0.249
36	36	0.709
37	37	0.236
38	38	0.254
39	39	0.827
4	4	0.698
40	40	0.71
41	41	0.098
42	42	0.305
43	43	0.111
44	44	0.799
45	45	0.377
46	46	0.0532
47	47	0.829
48	48	0.677
49	49	0.0884
5	5	0.112
50	50	0.99
51	51	0.44
52	52	0.461
53	53	0.445
54	54	0.345
55	55	0.0511
56	56	0.517
57	57	0.589
58	58	0.0967
59	59	0.188
6	6	0.76
60	60	0.073
61	61	0.934
62	62	0.0277
63	63	0.127
64	64	0.366
65	65	0.0837
66	66	0.513
67	67	0.257
68	68	0.871
69	69	0.716
7	7	0.52
70	70	0.0115
71	71	0.079
72	72	0.514
73	73	0.272
74	74	0.371
75	75	0.133
76	76	0.471
77	77	0.237
78	78	0.704
79	79	0.107
8	8	0.206
80	80	0.0645
81	81	0.331
82	82	0.134
83	83	0.639
84	84	0.495
85	85	0.0422
86	86	0.518
87	87	0.0782
88	88	0.828
89	89	0.0243
9	9	0.0993
90	90	0.349
91	91	0.176
92	92	0.0236
93	93	0.114
94	94	0.0909
95	95	0.948
96	96	0.0474
97	97	0.659
98	98	0.241
99	99	0.576

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13822

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
FF:0000210 human sample
FF:0200003 iPS differentiation to neuron, control sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000540 (neuron)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000393 (electrically responsive cell)
0000211 (electrically active cell)
0000404 (electrically signaling cell)
0000255 (eukaryotic cell)

FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0200005 (iPS differentiation to neuron sample)
0200003 (iPS differentiation to neuron, control sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000031 (neuroblast)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0000073,UBERON:0004121,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0001017,UBERON:0001016,UBERON:0000924,UBERON:0005743,UBERON:0006601
+|DRA_sample_Accession=CAGE@SAMD00005689
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000540,CL:0000055,CL:0000047,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002321,CL:0002371,CL:0002319,CL:0000221,CL:0000393,CL:0000220,CL:0000004,CL:0000031,CL:0000211,CL:0000404,CL:0000255,CL:0000133
+|accession_numbers=CAGE;DRX008603;DRR009475;DRZ000900;DRZ002285;DRZ012250;DRZ013635
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000393,CL:0000211,CL:0000404,CL:0000255
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000210,FF:0000101,FF:0000001,FF:0200005,FF:0200003
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
+|donor= rep2
 |expression_enrichment_score=chr20:31350184..31350200,+!p1@DNMT3B!2.60!792.67!DNMT3B;;chr8:128428066..128428078,+!p1@POU5F1B!2.10!124.42!POU5F1B;;chr6:31138439..31138475,-!p1@POU5F1!2.09!123.14!POU5F1;;chr8:145701192..145701241,-!p1@FOXH1!2.08!118.64!FOXH1;;chr8:73921136..73921151,+!p2@TERF1!2.04!160.91!TERF1;;chr3:181429704..181429722,+!p1@SOX2!2.04!107.87!SOX2;;chr4:188916918..188916942,+!p1@ZFP42!2.02!103.69!ZFP42;;chr14:57272369..57272391,-!p2@OTX2!1.86!71.37!OTX2;;chr1:226411361..226411366,+!p1@MIXL1!1.85!70.09!MIXL1;;chr16:3149278..3149305,-!p1@ZSCAN10!1.84!68.96!ZSCAN10;;chr13:100623375..100623425,-!p1@ZIC5!1.75!55.30!ZIC5;;chr8:70983476..70983493,-!p1@PRDM14!1.66!44.69!PRDM14;;chr1:164528687..164528711,+!p6@PBX1!1.62!46.62!PBX1;;chr12:7941989..7942014,+!p1@NANOG!1.62!40.99!NANOG;;chr19:20188776..20188826,+!p1@ZNF90!1.61!104.17!ZNF90;;chrX:136648279..136648295,+!p1@ZIC3!1.58!36.81!ZIC3;;chr13:100634031..100634045,+!p1@ZIC2!1.53!33.12!ZIC2;;chr1:6304233..6304243,+!p1@HES3!1.53!32.95!HES3;;chr3:57234000..57234014,-!p1@HESX1!1.48!29.10!HESX1;;chr9:114287433..114287513,+!p1@ZNF483!1.46!70.41!ZNF483;;chr17:47892398..47892407,+!p2@KAT7!1.45!27.01!KAT7;;chr11:63684602..63684664,-!p1@RCOR2!1.43!50.64!RCOR2;;chr17:7493405..7493419,-!p1@SOX15!1.42!25.40!SOX15;;chr10:126138597..126138612,-!p1@NKX1-2!1.42!25.08!NKX1-2;;chr2:16080659..16080685,+!p1@MYCN!1.41!24.43!MYCN;;chr20:50418972..50419029,-!p1@SALL4!1.40!24.11!SALL4;;chr11:128457446..128457461,-!p4@ETS1!1.39!23.31!ETS1;;chr2:16081912..16081931,+!p2@MYCN!1.36!21.86!MYCN;;chr10:70320074..70320106,+!p1@TET1!1.33!40.51!TET1;;chr14:22005197..22005261,-!p3@SALL2!1.33!20.25!SALL2;;chr20:50419055..50419066,-!p3@SALL4!1.33!20.25!SALL4;;chr2:5832508..5832524,+!p1@SOX11!1.33!20.25!SOX11;;chr2:25475094..25475112,-!p3@DNMT3A!1.30!18.81!DNMT3A;;chr2:25475120..25475176,-!p2@DNMT3A!1.29!25.08!DNMT3A;;chr8:102504651..102504683,+!p1@GRHL2!1.29!18.49!GRHL2;;chr3:27764190..27764208,-!p2@EOMES!1.27!17.52!EOMES;;chr5:153857778..153857794,-!p1@HAND1!1.26!17.04!HAND1;;chr4:299227..299272,-!p1@ZNF732!1.24!16.40!ZNF732;;chr3:181429741..181429767,+!p2@SOX2!1.23!15.91!SOX2;;chr12:7942020..7942031,+!p2@NANOG!1.23!15.91!NANOG;;chr7:26191809..26191890,+!p1@NFE2L3!1.22!76.52!NFE2L3;;chrX:139587228..139587234,-!p1@SOX3!1.22!15.75!SOX3;;chr13:100634004..100634025,+!p2@ZIC2!1.22!15.75!ZIC2;;chr13:100638100..100638115,+!p4@ZIC2!1.22!15.59!ZIC2;;chr2:171571827..171571853,+!p1@SP5!1.22!15.43!SP5;;chr9:127533519..127533573,-!p2@NR6A1!1.21!18.33!NR6A1;;chr10:135043702..135043729,+!p1@UTF1!1.21!15.27!UTF1;;chr17:41622765..41622821,-!p2@ETV4!1.20!22.34!ETV4;;chr3:48282587..48282603,+!p1@ZNF589!1.19!64.14!ZNF589;;chr19:46800289..46800327,+!p2@HIF3A!1.19!14.63!HIF3A;;chr2:60780753..60780800,-!p1@BCL11A!1.18!69.77!BCL11A;;chr8:145701166..145701187,-!p2@FOXH1!1.18!14.15!FOXH1;;chr18:56530136..56530199,+!p3@ZNF532!1.17!20.90!ZNF532;;chr19:23299814..23299844,+!p1@ZNF730!1.17!17.04!ZNF730;;chr6:166581333..166581349,-!p2@T!1.16!13.34!T;;chr17:41623692..41623715,-!p1@ETV4!1.15!55.78!ETV4;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.15!28.29!SOHLH2;;chr1:63788229..63788250,+!p1@FOXD3!1.15!13.02!FOXD3;;chr19:20011775..20011800,+!p2@ZNF93!1.14!22.99!ZNF93;;chr3:71355163..71355209,-!p5@FOXP1!1.11!16.72!FOXP1;;chr1:201979703..201979721,+!p2@ELF3!1.11!11.90!ELF3;;chr8:40755333..40755352,-!p1@ZMAT4!1.11!11.90!ZMAT4;;chr6:21597765..21597779,+!p2@SOX4!1.10!94.36!SOX4;;chr3:170076314..170076334,+!p2@SKIL!1.10!15.11!SKIL;;chr8:55370487..55370503,+!p1@SOX17!1.10!11.73!SOX17;;chrY:21906594..21906622,-!p1@KDM5D!1.10!11.57!KDM5D;;chr12:3068544..3068597,+!p1@TEAD4!1.09!68.16!TEAD4;;chr5:124084493..124084524,-!p2@ZNF608!1.09!25.56!ZNF608;;chr20:50418128..50418147,-!p2@SALL4!1.09!11.25!SALL4;;chr12:66218836..66218888,+!p1@HMGA2!1.08!102.88!HMGA2;;chr2:60780607..60780624,-!p2@BCL11A!1.08!34.24!BCL11A;;chr18:56531584..56531646,+!p4@ZNF532!1.08!14.47!ZNF532;;chr19:12163769..12163798,-!p1@ZNF878!1.08!14.31!ZNF878;;chr3:27763807..27763822,-!p1@EOMES!1.08!10.93!EOMES;;chr19:23433144..23433204,-!p1@ZNF724P!1.07!48.23!ZNF724P;;chr14:95236551..95236576,-!p2@GSC!1.07!10.77!GSC;;chr16:30406423..30406447,+!p4@ZNF48!1.07!10.77!ZNF48;;chr6:15246200..15246214,+!p2@JARID2!1.06!29.58!JARID2;;chr12:66218183..66218209,+!p4@HMGA2!1.06!20.25!HMGA2;;chr8:73921067..73921078,+!p3@TERF1!1.04!15.91!TERF1;;chr14:21994337..21994442,-!p1@SALL2!1.03!27.33!SALL2;;chr16:29818199..29818216,+!p11@MAZ!1.03!16.08!MAZ;;chr8:70983506..70983522,-!p3@PRDM14!1.03!9.81!PRDM14;;chr15:90294478..90294480,-!p6@MESP1!1.03!9.65!MESP1;;chr2:16082155..16082169,+!p3@MYCN!1.03!9.65!MYCN;;chr6:20402102..20402152,+!p1@E2F3!1.02!39.71!E2F3;;chr19:58400344..58400364,-!p2@ZNF814!1.02!13.82!ZNF814;;chr19:58341656..58341694,+!p5@ZNF587!1.02!11.57!ZNF587;;chr1:201979743..201979762,+!p1@ELF3!1.01!9.16!ELF3;;chr11:120107344..120107351,+!p1@POU2F3!1.00!11.09!POU2F3;;chr15:74833584..74833626,+!p1@ARID3B!0.99!20.74!ARID3B;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.99!12.86!TGIF2;;chr19:58400372..58400411,-!p1@ZNF814!0.98!45.49!ZNF814;;chr14:69263043..69263069,-!p8@ZFP36L1!0.98!8.52!ZFP36L1;;chr6:34204672..34204692,+!p1@HMGA1!0.97!960.34!HMGA1;;chr6:21593973..21593988,+!p1@SOX4!0.96!302.22!SOX4;;chr14:90085820..90085840,-!p6@FOXN3!0.96!8.20!FOXN3;;chr17:35294075..35294102,+!p1@ENST00000559335!0.96!8.04!LHX1;;chr19:50922187..50922204,+!p1@SPIB!0.96!8.04!SPIB;;chrX:136648297..136648319,+!p3@ZIC3!0.96!8.04!ZIC3;;chr2:85360499..85360598,+!p1@TCF7L1!0.94!44.37!TCF7L1;;chr12:66218378..66218401,+!p6@HMGA2!0.94!12.22!HMGA2;;chr6:126070769..126070801,+!p1@HEY2!0.94!9.00!HEY2;;chr20:42295713..42295738,+!p2@MYBL2!0.93!45.65!MYBL2;;chrX:136648643..136648711,+!p2@ZIC3!0.93!7.56!ZIC3;;chr8:70983443..70983460,-!p2@PRDM14!0.93!7.56!PRDM14;;chr19:20959098..20959117,+!p1@ZNF66P!0.92!31.83!ZNF66P;;chr8:86089627..86089653,+!p3@E2F5!0.92!8.36!E2F5;;chr19:23299851..23299880,+!p2@ZNF730!0.92!7.23!ZNF730;;chr14:22005343..22005364,-!p5@SALL2!0.92!7.23!SALL2;;chr16:29818160..29818188,+!p6@MAZ!0.91!34.40!MAZ;;chr19:20011744..20011770,+!p1@ZNF93!0.91!29.10!ZNF93;;chr19:12203100..12203132,+!p1@ZNF788!0.91!14.95!ZNF788;;chr6:21597600..21597664,+!p3@SOX4!0.91!12.06!SOX4;;chr11:6947720..6947812,+!p1@ZNF215!0.91!9.32!ZNF215;;chr10:48355030..48355090,+!p1@ZNF488!0.90!9.16!ZNF488;;chr7:14028743..14028799,-!p3@ETV1!0.90!8.84!ETV1;;chr14:21994449..21994524,-!p2@SALL2!0.89!20.90!SALL2;;chr10:70320041..70320065,+!p2@TET1!0.89!6.75!TET1;;chr3:185797712..185797746,-!p6@ETV5!0.88!6.59!ETV5;;chr5:138609782..138609826,+!p5@MATR3!0.87!43.72!MATR3;;chr19:20150268..20150298,-!p2@ZNF682!0.87!12.38!ZNF682;;chr1:247171347..247171366,-!p2@ZNF695!0.87!12.06!ZNF695;;chr17:46132044..46132080,+!p4@NFE2L1!0.87!6.43!NFE2L1;;chr18:76740152..76740186,+!p2@SALL3!0.87!6.43!SALL3;;chr2:42795745..42795824,+!p1@MTA3!0.86!61.41!MTA3;;chr18:53254566..53254567,-!p8@TCF4!0.86!10.45!TCF4;;chr3:33482052..33482116,-!p2@UBP1!0.86!9.81!UBP1;;chr2:60778035..60778060,-!p4@BCL11A!0.86!7.56!BCL11A;;chr9:77112244..77112262,+!p1@RORB!0.86!7.07!RORB;;chr10:126138622..126138638,-!p2@NKX1-2!0.86!6.27!NKX1-2;;chr15:85144307..85144329,+!p2@ZSCAN2!0.85!7.07!ZSCAN2;;chr20:31368212..31368235,+!p2@DNMT3B!0.85!6.11!DNMT3B;;chr19:19976683..19976709,+!p1@ZNF253!0.84!27.65!ZNF253;;chr1:40367530..40367597,-!p1@MYCL1!0.84!11.25!MYCL1;;chr15:57511609..57511651,+!p2@TCF12!0.84!10.29!TCF12;;chr17:41623009..41623053,-!p4@ETV4!0.84!9.81!ETV4;;chrX:84499081..84499115,+!p2@ZNF711!0.84!8.84!ZNF711;;chr19:20188831..20188844,+!p2@ZNF90!0.84!5.95!ZNF90;;chr2:5832493..5832507,+!p2@SOX11!0.84!5.95!SOX11;;chr2:239148671..239148686,-!p1@HES6!0.83!22.51!HES6;;chr14:22005018..22005040,-!p6@SALL2!0.83!5.79!SALL2;;chr19:22034809..22034878,-!p2@ZNF43!0.82!21.22!ZNF43;;chr19:925727..925784,+!p3@ARID3A!0.82!12.70!ARID3A;;chr17:41622925..41622976,-!p3@ETV4!0.82!8.68!ETV4;;chr19:46367576..46367592,+!p1@FOXA3!0.82!5.63!FOXA3;;chr13:41240737..41240787,-!p1@FOXO1!0.81!70.89!FOXO1;;chr10:114710098..114710130,+!p2@TCF7L2!0.81!44.21!TCF7L2;;chr19:23941680..23941704,-!p1@ZNF681!0.81!16.88!ZNF681;;chr6:21597514..21597578,+!p4@SOX4!0.81!9.65!SOX4;;chr14:21566540..21566580,-!p2@ZNF219!0.81!7.56!ZNF219;;chr12:66218152..66218174,+!p10@HMGA2!0.81!5.95!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.81!5.47!HMGA2;;chr6:28048343..28048354,+!p1@ZNF165!0.81!5.47!ZNF165;;chr1:204042233..204042249,+!p1@SOX13!0.80!36.17!SOX13;;chr12:66218598..66218645,+!p2@HMGA2!0.80!26.36!HMGA2;;chr3:141747441..141747452,-!p4@TFDP2!0.80!7.72!TFDP2;;chrX:84498989..84499003,+!p1@ZNF711!0.80!7.39!ZNF711;;chr13:100623360..100623373,-!p2@ZIC5!0.80!5.30!ZIC5;;chr6:15246261..15246312,+!p1@JARID2!0.79!136.48!JARID2;;chr9:127533582..127533615,-!p1@NR6A1!0.79!8.04!NR6A1;;chr2:171572786..171572840,+!p2@SP5!0.79!5.14!SP5;;chr14:75745523..75745537,+!p1@FOS!0.78!666.80!FOS;;chr19:20278012..20278034,+!p1@ZNF486!0.78!46.30!ZNF486;;chr6:21597370..21597408,+!p5@SOX4!0.78!8.36!SOX4;;chr5:124082580..124082603,-!p4@ZNF608!0.78!5.79!ZNF608;;chr4:26322267..26322334,+!p3@RBPJ!0.77!12.70!RBPJ;;chr1:209979467..209979494,-!p1@IRF6!0.77!5.63!IRF6;;chr19:23941647..23941672,-!p2@ZNF681!0.76!8.36!ZNF681;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.75!19.13!HNRPK;;chr12:66218212..66218244,+!p5@HMGA2!0.75!6.91!HMGA2;;chr6:21597283..21597312,+!p7@SOX4!0.75!6.43!SOX4;;chr17:7197911..7197964,-!p1@YBX2!0.75!4.66!YBX2;;chr12:50479109..50479146,+!p2@SMARCD1!0.74!84.23!SMARCD1;;chr12:7079780..7079791,-!p2@PHB2!0.74!26.04!PHB2;;chr1:164528616..164528660,+!p5@PBX1!0.74!9.81!PBX1;;chr10:114710218..114710229,+!p4@TCF7L2!0.74!9.48!TCF7L2;;chr16:51185363..51185381,-!p4@SALL1!0.74!4.50!SALL1;;chr22:21771656..21771662,+!p1@HIC2!0.74!4.50!HIC2;;chr2:16080635..16080650,+!p4@MYCN!0.74!4.50!MYCN;;chr2:88752207..88752218,-!p1@FOXI3!0.74!4.50!FOXI3;;chr19:47523058..47523114,+!p1@NPAS1!0.74!4.50!NPAS1;;chr20:42295745..42295765,+!p1@MYBL2!0.73!80.22!MYBL2;;chr7:64838786..64838809,+!p2@ZNF92!0.73!27.81!ZNF92;;chr19:23869970..23869991,-!p1@ZNF675!0.73!18.49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 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/iPS%2520differentiation%2520to%2520neuron%252c%2520control%2520donor%2520C11-CRL2429%252c%2520day00%252c%2520rep2.CNhs13822.13425-144D5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/iPS%2520differentiation%2520to%2520neuron%252c%2520control%2520donor%2520C11-CRL2429%252c%2520day00%252c%2520rep2.CNhs13822.13425-144D5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/iPS%2520differentiation%2520to%2520neuron%252c%2520control%2520donor%2520C11-CRL2429%252c%2520day00%252c%2520rep2.CNhs13822.13425-144D5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/iPS%2520differentiation%2520to%2520neuron%252c%2520control%2520donor%2520C11-CRL2429%252c%2520day00%252c%2520rep2.CNhs13822.13425-144D5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/iPS%2520differentiation%2520to%2520neuron%252c%2520control%2520donor%2520C11-CRL2429%252c%2520day00%252c%2520rep2.CNhs13822.13425-144D5.hg38.nobarcode.ctss.bed.gz
 |id=FF:13425-144D5
 |is_a=FF:0000210;;FF:0200003
 |is_obsolete=
-|name=iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2
+|library_id=CNhs13822
+|library_id_phase_based=2:CNhs13822
+|microRNAs=
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+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;13425
+|name=iPS differentiation to neuron, control donor C11-CRL2429
 |namespace=
 |part_of=
@@ Line 46: / Line 63: @@
 |profile_rnaseq=
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 |rna_box=144
 |rna_catalog_number=
@@ Line 57: / Line 77: @@
 |rna_sample_type=total RNA
 |rna_tube_id=144D5
-|rna_weight_ug=5.00
+|rna_weight_ug=5
 |sample_age=newborn
+|sample_category=time courses
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 78: / Line 99: @@
 |sample_strain=
 |sample_tissue=
+|time= day00
+|timecourse=Human_iPS_to_neuron_(wt)_1
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:13425-144D5;search_select_hide=table117:FF:13425-144D5
 }}

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FF:13425-144D5: Difference between revisions

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Latest revision as of 18:58, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0