FF:13425-144D5: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005689 | |||
|accession_numbers=CAGE;DRX008603;DRR009475;DRZ000900;DRZ002285;DRZ012250;DRZ013635 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000393,CL:0000211,CL:0000404,CL:0000255 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000210,FF:0000101,FF:0000001,FF:0200005,FF:0200003 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|donor= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/iPS%2520differentiation%2520to%2520neuron%252c%2520control%2520donor%2520C11-CRL2429%252c%2520day00%252c%2520rep2.CNhs13822.13425-144D5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/iPS%2520differentiation%2520to%2520neuron%252c%2520control%2520donor%2520C11-CRL2429%252c%2520day00%252c%2520rep2.CNhs13822.13425-144D5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/iPS%2520differentiation%2520to%2520neuron%252c%2520control%2520donor%2520C11-CRL2429%252c%2520day00%252c%2520rep2.CNhs13822.13425-144D5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/iPS%2520differentiation%2520to%2520neuron%252c%2520control%2520donor%2520C11-CRL2429%252c%2520day00%252c%2520rep2.CNhs13822.13425-144D5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/iPS%2520differentiation%2520to%2520neuron%252c%2520control%2520donor%2520C11-CRL2429%252c%2520day00%252c%2520rep2.CNhs13822.13425-144D5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:13425-144D5 | |id=FF:13425-144D5 | ||
|is_a=FF:0000210;;FF:0200003 | |is_a=FF:0000210;;FF:0200003 | ||
|name=iPS differentiation to neuron, control donor C11-CRL2429 | |is_obsolete= | ||
|library_id=CNhs13822 | |||
|library_id_phase_based=2:CNhs13822 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;13425 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;13425 | |||
|name=iPS differentiation to neuron, control donor C11-CRL2429 | |||
|namespace= | |namespace= | ||
|part_of= | |part_of= | ||
| Line 44: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0392487932161197,0.121069236870266,0.251533625892738,0.23558489682597,0,0,0,0,0,0,0,0,0,0,0,0.489929093988097,0,0.288887731590953,0,0,0.0323699351672233,0,0,0.0729663302104943,0,0,0.0826843025807127,0,0,0,0,0,0,0,0,0,0,0,0,0.0501774824733471,0.170924226478552,0,0,0,0,0,0,0,0.573944127587753,0,0,0,0,0.121069236870266,0,0,0.291602265349839,0,0,0.230070901331176,0,0,0,0,0,0,0,0,0,0,0.121069236870266,0,0,0.0647398703344467,0,0,0,0.0156011527700012,0,0,0,0,0,0.0195913621166948,-0.0615705842208073,0.107820446179788,0,0,0.0382806788995537,-0.0901281658256025,0,0.0647398703344467,0,0,-0.0980353512377064,0.206294767858027,0,0,0,0.170924226478552,0,0,0.121069236870266,0,0,0,0,0,0,0,0,0,0,0.0114468522573265,0.0647398703344467,0,0,0.0647577411146542,0.0997501227796783,0,0,0.162414987684085,0,0,0 | |||
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| |||
|rna_box=144 | |rna_box=144 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 55: | Line 77: | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id=144D5 | |rna_tube_id=144D5 | ||
|rna_weight_ug=5 | |rna_weight_ug=5 | ||
|sample_age=newborn | |sample_age=newborn | ||
|sample_category=time courses | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.29637760785045e-264!GO:0043226;organelle;3.10306347493447e-219!GO:0043229;intracellular organelle;1.92426879258574e-218!GO:0043227;membrane-bound organelle;5.1342650539603e-214!GO:0043231;intracellular membrane-bound organelle;5.44448914901661e-214!GO:0005737;cytoplasm;2.03634367633664e-180!GO:0044422;organelle part;7.55935661748243e-158!GO:0044446;intracellular organelle part;3.25309703281281e-156!GO:0044444;cytoplasmic part;1.06099646274846e-125!GO:0032991;macromolecular complex;2.63160563023213e-117!GO:0030529;ribonucleoprotein complex;8.94270915608602e-103!GO:0044237;cellular metabolic process;8.91712672604024e-101!GO:0044238;primary metabolic process;3.8591607069299e-100!GO:0005634;nucleus;2.05369876206088e-97!GO:0043170;macromolecule metabolic process;2.90328289217528e-94!GO:0003723;RNA binding;2.73933172579601e-88!GO:0043233;organelle lumen;1.24107181546234e-82!GO:0031974;membrane-enclosed lumen;1.24107181546234e-82!GO:0044428;nuclear part;8.14236838140266e-82!GO:0005739;mitochondrion;2.53671023953049e-79!GO:0005515;protein binding;3.24918586227774e-64!GO:0005840;ribosome;1.35442448663146e-63!GO:0006396;RNA processing;1.61656752020688e-59!GO:0043234;protein complex;9.73379216562229e-59!GO:0043283;biopolymer metabolic process;5.9533573425471e-58!GO:0006412;translation;3.07967531455953e-56!GO:0003735;structural constituent of ribosome;8.24972280562903e-55!GO:0016043;cellular component organization and biogenesis;3.56709654706248e-53!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.76902602187807e-52!GO:0044429;mitochondrial part;2.85565346014886e-51!GO:0031981;nuclear lumen;6.11489902015907e-50!GO:0010467;gene expression;6.46948004171443e-50!GO:0033279;ribosomal subunit;1.1475224168723e-48!GO:0009058;biosynthetic process;1.9914837952883e-47!GO:0019538;protein metabolic process;3.26350052551664e-47!GO:0043228;non-membrane-bound organelle;1.88307066578388e-46!GO:0043232;intracellular non-membrane-bound organelle;1.88307066578388e-46!GO:0044249;cellular biosynthetic process;3.68371682352328e-46!GO:0006996;organelle organization and biogenesis;8.9600634513692e-46!GO:0016071;mRNA metabolic process;1.25103162677645e-43!GO:0031090;organelle membrane;1.37994662137609e-43!GO:0009059;macromolecule biosynthetic process;1.57608882585098e-43!GO:0031967;organelle envelope;5.8441823592938e-43!GO:0065003;macromolecular complex assembly;1.17171598859506e-42!GO:0031975;envelope;1.65827672702078e-42!GO:0044267;cellular protein metabolic process;2.29735441106534e-41!GO:0044260;cellular macromolecule metabolic process;3.34632933412952e-41!GO:0006259;DNA metabolic process;5.91261432540096e-41!GO:0008380;RNA splicing;1.29019324675576e-40!GO:0022607;cellular component assembly;1.97898116902344e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.24882256668263e-39!GO:0033036;macromolecule localization;2.77146118920648e-38!GO:0015031;protein transport;3.15493699159874e-38!GO:0006397;mRNA processing;4.90045746862587e-37!GO:0005829;cytosol;1.61567164909724e-35!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.69357566512039e-35!GO:0008104;protein localization;2.73714379676086e-34!GO:0003676;nucleic acid binding;1.51097247543262e-33!GO:0045184;establishment of protein localization;1.8407219950754e-33!GO:0046907;intracellular transport;5.026158071277e-33!GO:0000166;nucleotide binding;3.79629647099176e-31!GO:0019866;organelle inner membrane;7.83905476742244e-31!GO:0005740;mitochondrial envelope;1.61512950084682e-30!GO:0005681;spliceosome;1.20940570686433e-29!GO:0005743;mitochondrial inner membrane;1.15915993900548e-28!GO:0031966;mitochondrial membrane;1.89764394335099e-28!GO:0007049;cell cycle;2.16723999644875e-28!GO:0005654;nucleoplasm;2.25857805364833e-28!GO:0044445;cytosolic part;3.85145926152991e-27!GO:0005694;chromosome;3.69262599035288e-26!GO:0006886;intracellular protein transport;8.02464615087473e-26!GO:0015935;small ribosomal subunit;1.09872521237106e-25!GO:0031980;mitochondrial lumen;1.91555722327653e-25!GO:0005759;mitochondrial matrix;1.91555722327653e-25!GO:0044427;chromosomal part;2.08541564931173e-24!GO:0015934;large ribosomal subunit;3.61677705452502e-24!GO:0005730;nucleolus;1.3692268920283e-23!GO:0006974;response to DNA damage stimulus;2.53304119314598e-23!GO:0016070;RNA metabolic process;5.86655835498797e-23!GO:0044455;mitochondrial membrane part;6.28738375087921e-23!GO:0006119;oxidative phosphorylation;1.05785288594568e-22!GO:0044451;nucleoplasm part;1.53808278491509e-22!GO:0051649;establishment of cellular localization;1.66999502688721e-22!GO:0022618;protein-RNA complex assembly;2.09965212875883e-22!GO:0016462;pyrophosphatase activity;6.31946784587357e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.49762807701294e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.11817209201983e-21!GO:0032553;ribonucleotide binding;1.22052693944376e-21!GO:0032555;purine ribonucleotide binding;1.22052693944376e-21!GO:0000278;mitotic cell cycle;1.42965975078837e-21!GO:0051276;chromosome organization and biogenesis;1.63106013758245e-21!GO:0051641;cellular localization;1.72841612927699e-21!GO:0022402;cell cycle process;3.58531975161134e-21!GO:0017076;purine nucleotide binding;6.80203579994401e-21!GO:0017111;nucleoside-triphosphatase activity;1.26893284841337e-20!GO:0016874;ligase activity;1.23156975904243e-19!GO:0006281;DNA repair;2.09862611792752e-19!GO:0000087;M phase of mitotic cell cycle;1.94757124195559e-18!GO:0005761;mitochondrial ribosome;2.95564183793523e-18!GO:0000313;organellar ribosome;2.95564183793523e-18!GO:0007067;mitosis;3.33025085180415e-18!GO:0005524;ATP binding;3.45958452751196e-18!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.7905904940353e-18!GO:0044265;cellular macromolecule catabolic process;5.42700230513351e-18!GO:0022403;cell cycle phase;7.58159884604704e-18!GO:0032559;adenyl ribonucleotide binding;8.91398999134527e-18!GO:0008135;translation factor activity, nucleic acid binding;9.81526657364075e-18!GO:0051301;cell division;1.29509758662145e-17!GO:0006457;protein folding;2.56951053469926e-17!GO:0042254;ribosome biogenesis and assembly;2.63298263489435e-17!GO:0005746;mitochondrial respiratory chain;3.66068004981402e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.73616219411354e-17!GO:0012505;endomembrane system;4.81647939240419e-17!GO:0030554;adenyl nucleotide binding;6.39846577988754e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;8.23305962965449e-17!GO:0006260;DNA replication;9.16763769883522e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;9.38127401093797e-17!GO:0050136;NADH dehydrogenase (quinone) activity;9.45001521704964e-17!GO:0003954;NADH dehydrogenase activity;9.45001521704964e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.45001521704964e-17!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.12976281759226e-16!GO:0019941;modification-dependent protein catabolic process;1.29282327566088e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.29282327566088e-16!GO:0044257;cellular protein catabolic process;1.92103096991665e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.9431778753358e-16!GO:0006512;ubiquitin cycle;2.99355611754759e-16!GO:0006323;DNA packaging;3.09603177800117e-16!GO:0043285;biopolymer catabolic process;3.29775718140135e-16!GO:0000279;M phase;9.06307294272104e-16!GO:0009057;macromolecule catabolic process;1.23469775885994e-15!GO:0051186;cofactor metabolic process;1.36182626792366e-15!GO:0009719;response to endogenous stimulus;1.608289365299e-15!GO:0044248;cellular catabolic process;1.69169730152547e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;1.88739856357265e-15!GO:0000375;RNA splicing, via transesterification reactions;1.88739856357265e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.88739856357265e-15!GO:0000502;proteasome complex (sensu Eukaryota);5.16345540650661e-15!GO:0006413;translational initiation;5.84580574850226e-15!GO:0030163;protein catabolic process;1.65023617491682e-14!GO:0048770;pigment granule;1.6796854113356e-14!GO:0042470;melanosome;1.6796854113356e-14!GO:0065004;protein-DNA complex assembly;1.71768993370839e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.83555297715852e-14!GO:0045271;respiratory chain complex I;1.83555297715852e-14!GO:0005747;mitochondrial respiratory chain complex I;1.83555297715852e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.90566369339138e-14!GO:0042773;ATP synthesis coupled electron transport;1.90566369339138e-14!GO:0043412;biopolymer modification;1.98104678257412e-14!GO:0031965;nuclear membrane;2.36549384656719e-14!GO:0003743;translation initiation factor activity;2.47388174401898e-14!GO:0000785;chromatin;4.04118554272338e-14!GO:0006399;tRNA metabolic process;5.73824567004026e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.63313974312248e-14!GO:0006605;protein targeting;1.48376283407803e-13!GO:0044453;nuclear membrane part;1.48828610299123e-13!GO:0005635;nuclear envelope;3.73497884905938e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.88862236476846e-13!GO:0006732;coenzyme metabolic process;4.6919361533158e-13!GO:0005643;nuclear pore;8.62955587017e-13!GO:0006333;chromatin assembly or disassembly;1.16274225273259e-12!GO:0005794;Golgi apparatus;1.23859330779446e-12!GO:0004386;helicase activity;1.40856057212047e-12!GO:0006364;rRNA processing;2.04661097084511e-12!GO:0006446;regulation of translational initiation;2.27992971902868e-12!GO:0016072;rRNA metabolic process;3.01104491098974e-12!GO:0006464;protein modification process;3.34839979018403e-12!GO:0042623;ATPase activity, coupled;3.76150605511155e-12!GO:0016887;ATPase activity;5.7886913306822e-12!GO:0006334;nucleosome assembly;6.10921988378553e-12!GO:0051082;unfolded protein binding;6.48078673033152e-12!GO:0016740;transferase activity;1.63480190630071e-11!GO:0008134;transcription factor binding;1.87647520379804e-11!GO:0031497;chromatin assembly;1.95859848552413e-11!GO:0016604;nuclear body;3.77128163418336e-11!GO:0006403;RNA localization;4.1170172623954e-11!GO:0006461;protein complex assembly;4.28588495969112e-11!GO:0005783;endoplasmic reticulum;5.05680838659782e-11!GO:0008565;protein transporter activity;5.47241079129838e-11!GO:0050657;nucleic acid transport;6.46866140055564e-11!GO:0051236;establishment of RNA localization;6.46866140055564e-11!GO:0050658;RNA transport;6.46866140055564e-11!GO:0043687;post-translational protein modification;8.8409567366554e-11!GO:0008026;ATP-dependent helicase activity;9.67539975745751e-11!GO:0065002;intracellular protein transport across a membrane;1.21746378821867e-10!GO:0006913;nucleocytoplasmic transport;1.54157786008125e-10!GO:0015630;microtubule cytoskeleton;1.90613684984028e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.9246072782486e-10!GO:0004812;aminoacyl-tRNA ligase activity;2.9246072782486e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.9246072782486e-10!GO:0051169;nuclear transport;4.00327472762579e-10!GO:0030532;small nuclear ribonucleoprotein complex;6.17544357910545e-10!GO:0048193;Golgi vesicle transport;6.76675220881577e-10!GO:0043038;amino acid activation;7.24187820199507e-10!GO:0006418;tRNA aminoacylation for protein translation;7.24187820199507e-10!GO:0043039;tRNA aminoacylation;7.24187820199507e-10!GO:0046930;pore complex;7.39108726050891e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.9623390463248e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.16723458729892e-09!GO:0009055;electron carrier activity;1.16723458729892e-09!GO:0009259;ribonucleotide metabolic process;1.3169843106508e-09!GO:0016607;nuclear speck;1.31800592638316e-09!GO:0006163;purine nucleotide metabolic process;1.60265681239601e-09!GO:0051726;regulation of cell cycle;2.22958288450275e-09!GO:0006164;purine nucleotide biosynthetic process;2.33973863849316e-09!GO:0051028;mRNA transport;3.0957670476152e-09!GO:0006261;DNA-dependent DNA replication;3.15080491847825e-09!GO:0000074;regulation of progression through cell cycle;3.44715239077194e-09!GO:0009260;ribonucleotide biosynthetic process;5.01556022416848e-09!GO:0044432;endoplasmic reticulum part;5.14962716051695e-09!GO:0051188;cofactor biosynthetic process;5.33029138337339e-09!GO:0016779;nucleotidyltransferase activity;5.3453355659376e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.63052335111493e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.70166063130951e-09!GO:0009056;catabolic process;6.81996217447452e-09!GO:0000775;chromosome, pericentric region;9.89821996342445e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.0029674777561e-08!GO:0009150;purine ribonucleotide metabolic process;1.62742811397379e-08!GO:0009060;aerobic respiration;2.36298682335637e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.46141512257805e-08!GO:0008639;small protein conjugating enzyme activity;2.60222401860369e-08!GO:0003899;DNA-directed RNA polymerase activity;2.81846540900774e-08!GO:0016192;vesicle-mediated transport;3.24846500260583e-08!GO:0007005;mitochondrion organization and biogenesis;3.79609643455919e-08!GO:0004842;ubiquitin-protein ligase activity;4.17669434241141e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.91660392612019e-08!GO:0017038;protein import;6.48420021015529e-08!GO:0009117;nucleotide metabolic process;7.8975270299229e-08!GO:0015986;ATP synthesis coupled proton transport;9.68168770859706e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.68168770859706e-08!GO:0005793;ER-Golgi intermediate compartment;9.97047515089446e-08!GO:0043566;structure-specific DNA binding;1.13841930115963e-07!GO:0009108;coenzyme biosynthetic process;1.27907721275526e-07!GO:0019787;small conjugating protein ligase activity;1.30911648836163e-07!GO:0045333;cellular respiration;1.47791901796241e-07!GO:0019829;cation-transporting ATPase activity;1.47791901796241e-07!GO:0003697;single-stranded DNA binding;1.53861126773046e-07!GO:0043623;cellular protein complex assembly;1.57232828107208e-07!GO:0016568;chromatin modification;3.30461874045172e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.53032483136971e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.53032483136971e-07!GO:0009141;nucleoside triphosphate metabolic process;3.93733920047226e-07!GO:0009199;ribonucleoside triphosphate metabolic process;4.49210924277389e-07!GO:0000245;spliceosome assembly;5.55456877096504e-07!GO:0005819;spindle;5.80108156270829e-07!GO:0006099;tricarboxylic acid cycle;5.86443231298005e-07!GO:0046356;acetyl-CoA catabolic process;5.86443231298005e-07!GO:0005762;mitochondrial large ribosomal subunit;6.3766307376594e-07!GO:0000315;organellar large ribosomal subunit;6.3766307376594e-07!GO:0045259;proton-transporting ATP synthase complex;6.66054178218231e-07!GO:0008094;DNA-dependent ATPase activity;6.95886156499836e-07!GO:0007051;spindle organization and biogenesis;7.13858528183223e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.45483727820434e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.45483727820434e-07!GO:0005657;replication fork;7.95820931880755e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.65862234241434e-07!GO:0006084;acetyl-CoA metabolic process;8.73152556043153e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.96994826198533e-07!GO:0009144;purine nucleoside triphosphate metabolic process;8.96994826198533e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.02084503626047e-06!GO:0000786;nucleosome;1.05040909346154e-06!GO:0003924;GTPase activity;1.10615719992269e-06!GO:0032446;protein modification by small protein conjugation;1.26107611925896e-06!GO:0007010;cytoskeleton organization and biogenesis;1.34279997149467e-06!GO:0006793;phosphorus metabolic process;1.38819512899212e-06!GO:0006796;phosphate metabolic process;1.38819512899212e-06!GO:0006754;ATP biosynthetic process;1.81950227865494e-06!GO:0006753;nucleoside phosphate metabolic process;1.81950227865494e-06!GO:0006752;group transfer coenzyme metabolic process;1.87126712516577e-06!GO:0050794;regulation of cellular process;2.04333353991598e-06!GO:0005525;GTP binding;2.10790197311402e-06!GO:0048475;coated membrane;2.13460978231941e-06!GO:0030117;membrane coat;2.13460978231941e-06!GO:0016567;protein ubiquitination;2.42271270053317e-06!GO:0016881;acid-amino acid ligase activity;2.45575796033006e-06!GO:0012501;programmed cell death;2.53902412844319e-06!GO:0000314;organellar small ribosomal subunit;2.54897430142566e-06!GO:0005763;mitochondrial small ribosomal subunit;2.54897430142566e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.64676843673097e-06!GO:0046034;ATP metabolic process;2.91909105972729e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.91909105972729e-06!GO:0005789;endoplasmic reticulum membrane;3.11602552571808e-06!GO:0006915;apoptosis;3.68388395962663e-06!GO:0003712;transcription cofactor activity;3.71234409562737e-06!GO:0005813;centrosome;3.84999062168285e-06!GO:0044431;Golgi apparatus part;4.1384520588303e-06!GO:0051329;interphase of mitotic cell cycle;5.15458397616901e-06!GO:0009109;coenzyme catabolic process;5.96065396089926e-06!GO:0006366;transcription from RNA polymerase II promoter;7.17019961916996e-06!GO:0051187;cofactor catabolic process;7.83614908642395e-06!GO:0006888;ER to Golgi vesicle-mediated transport;7.8977854314776e-06!GO:0005667;transcription factor complex;7.97739075137179e-06!GO:0005839;proteasome core complex (sensu Eukaryota);9.239335505341e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.24319655171384e-06!GO:0007017;microtubule-based process;9.96638189616326e-06!GO:0016853;isomerase activity;1.01121967111289e-05!GO:0051246;regulation of protein metabolic process;1.03319029016973e-05!GO:0005815;microtubule organizing center;1.20135499898435e-05!GO:0000075;cell cycle checkpoint;1.27178382822673e-05!GO:0051325;interphase;1.33386416727242e-05!GO:0003724;RNA helicase activity;1.3466411869232e-05!GO:0032561;guanyl ribonucleotide binding;1.7360798906454e-05!GO:0019001;guanyl nucleotide binding;1.7360798906454e-05!GO:0008033;tRNA processing;1.89908115866067e-05!GO:0031988;membrane-bound vesicle;2.13013614219364e-05!GO:0031982;vesicle;2.26021074697226e-05!GO:0051170;nuclear import;2.31269881518652e-05!GO:0006520;amino acid metabolic process;2.77383457215008e-05!GO:0016310;phosphorylation;2.81617037830878e-05!GO:0016741;transferase activity, transferring one-carbon groups;2.89678834600434e-05!GO:0030120;vesicle coat;2.91167525544827e-05!GO:0030662;coated vesicle membrane;2.91167525544827e-05!GO:0006613;cotranslational protein targeting to membrane;2.93749874174122e-05!GO:0044452;nucleolar part;2.99094973673957e-05!GO:0016859;cis-trans isomerase activity;3.07679204470335e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.46497958241127e-05!GO:0008168;methyltransferase activity;3.63773078230003e-05!GO:0005874;microtubule;3.71643946475688e-05!GO:0004298;threonine endopeptidase activity;4.04023306396088e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.08694713744411e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;4.45671370720219e-05!GO:0000776;kinetochore;4.4734185687533e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.56325713911441e-05!GO:0008219;cell death;4.63790471792066e-05!GO:0016265;death;4.63790471792066e-05!GO:0031410;cytoplasmic vesicle;4.63790471792066e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;5.31189635061364e-05!GO:0051168;nuclear export;5.47277772603244e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;5.56890215133118e-05!GO:0000139;Golgi membrane;6.347529300971e-05!GO:0006606;protein import into nucleus;6.46595103872632e-05!GO:0003690;double-stranded DNA binding;6.47332180510782e-05!GO:0006383;transcription from RNA polymerase III promoter;6.58595472376988e-05!GO:0009165;nucleotide biosynthetic process;7.06803325789273e-05!GO:0016363;nuclear matrix;7.29393384537184e-05!GO:0005768;endosome;8.1267781157612e-05!GO:0051427;hormone receptor binding;8.29202685173868e-05!GO:0006730;one-carbon compound metabolic process;9.90069857339949e-05!GO:0045454;cell redox homeostasis;0.000106788982295618!GO:0007264;small GTPase mediated signal transduction;0.000112578017609391!GO:0019222;regulation of metabolic process;0.000120478909808816!GO:0016787;hydrolase activity;0.000128480457809084!GO:0000059;protein import into nucleus, docking;0.00013196404996322!GO:0006302;double-strand break repair;0.000136411837231546!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000136411837231546!GO:0030880;RNA polymerase complex;0.000140306449324941!GO:0043681;protein import into mitochondrion;0.000146343042266611!GO:0019843;rRNA binding;0.000147008429300273!GO:0051052;regulation of DNA metabolic process;0.00015194091593305!GO:0043021;ribonucleoprotein binding;0.000152558381813816!GO:0035257;nuclear hormone receptor binding;0.000176086745467424!GO:0003729;mRNA binding;0.000179713642483923!GO:0000151;ubiquitin ligase complex;0.000192468736690607!GO:0050789;regulation of biological process;0.000217816038948452!GO:0003682;chromatin binding;0.000237929120675619!GO:0006839;mitochondrial transport;0.000244061695754802!GO:0003678;DNA helicase activity;0.000251354143609504!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000253364469172151!GO:0005788;endoplasmic reticulum lumen;0.000281754671612998!GO:0032259;methylation;0.000319572770464627!GO:0003684;damaged DNA binding;0.000323863526957485!GO:0008186;RNA-dependent ATPase activity;0.000326136286064525!GO:0005770;late endosome;0.000342317107942693!GO:0008654;phospholipid biosynthetic process;0.000365706372195496!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000376283897696723!GO:0000428;DNA-directed RNA polymerase complex;0.000376283897696723!GO:0006402;mRNA catabolic process;0.000388768857143965!GO:0043414;biopolymer methylation;0.00039970136637029!GO:0051087;chaperone binding;0.000424611112824722!GO:0048471;perinuclear region of cytoplasm;0.000429227302019166!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000446754536058265!GO:0007006;mitochondrial membrane organization and biogenesis;0.000455388324082944!GO:0005769;early endosome;0.000476084887446844!GO:0007059;chromosome segregation;0.00048919555493565!GO:0006612;protein targeting to membrane;0.000513062216131705!GO:0008250;oligosaccharyl transferase complex;0.000522707048424643!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000546770979288466!GO:0051920;peroxiredoxin activity;0.000563157187238476!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000618743848580959!GO:0031252;leading edge;0.00063194391092322!GO:0006414;translational elongation;0.000640866944417125!GO:0007093;mitotic cell cycle checkpoint;0.00065757183204055!GO:0042802;identical protein binding;0.000664517409172295!GO:0006401;RNA catabolic process;0.000674184408837909!GO:0005684;U2-dependent spliceosome;0.000718337870275751!GO:0006626;protein targeting to mitochondrion;0.000740591700624951!GO:0032508;DNA duplex unwinding;0.000747470451886211!GO:0032392;DNA geometric change;0.000747470451886211!GO:0004576;oligosaccharyl transferase activity;0.000759943655529114!GO:0015980;energy derivation by oxidation of organic compounds;0.000765067756073387!GO:0005798;Golgi-associated vesicle;0.000819055856172098!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00082176188254343!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00082176188254343!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00082176188254343!GO:0009112;nucleobase metabolic process;0.00083451157881561!GO:0006310;DNA recombination;0.000847270390256764!GO:0004004;ATP-dependent RNA helicase activity;0.000964827406548233!GO:0030867;rough endoplasmic reticulum membrane;0.00102795296415651!GO:0006352;transcription initiation;0.0010282285529662!GO:0007052;mitotic spindle organization and biogenesis;0.00104341087704122!GO:0004527;exonuclease activity;0.00106504102207688!GO:0006541;glutamine metabolic process;0.00112761191539125!GO:0008652;amino acid biosynthetic process;0.0011864427854314!GO:0009116;nucleoside metabolic process;0.00119708344951103!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00119708344951103!GO:0000049;tRNA binding;0.00121751514321902!GO:0015631;tubulin binding;0.00125776680793566!GO:0048523;negative regulation of cellular process;0.00127774933144127!GO:0005048;signal sequence binding;0.00139303722971111!GO:0006284;base-excision repair;0.00139479188149243!GO:0044440;endosomal part;0.00144294807381623!GO:0010008;endosome membrane;0.00144294807381623!GO:0007088;regulation of mitosis;0.0014945698261178!GO:0006268;DNA unwinding during replication;0.00152170378169634!GO:0051252;regulation of RNA metabolic process;0.00153970410243!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00161993664577136!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00161993664577136!GO:0006519;amino acid and derivative metabolic process;0.00164380683880942!GO:0016126;sterol biosynthetic process;0.0016762889469282!GO:0006790;sulfur metabolic process;0.00167861931534627!GO:0006144;purine base metabolic process;0.00197222360408365!GO:0043069;negative regulation of programmed cell death;0.00208933959539185!GO:0031324;negative regulation of cellular metabolic process;0.0021088861493017!GO:0046483;heterocycle metabolic process;0.00222273733442595!GO:0030145;manganese ion binding;0.00224952489123789!GO:0016491;oxidoreductase activity;0.00233443272361025!GO:0045786;negative regulation of progression through cell cycle;0.00235971789110756!GO:0000096;sulfur amino acid metabolic process;0.00244709268449529!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00252915840363716!GO:0016272;prefoldin complex;0.00258207016221983!GO:0030118;clathrin coat;0.00263942167295824!GO:0043066;negative regulation of apoptosis;0.00265667109695393!GO:0051539;4 iron, 4 sulfur cluster binding;0.00271498919643187!GO:0042981;regulation of apoptosis;0.00278878536341289!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0028100499554428!GO:0048487;beta-tubulin binding;0.00283516461812393!GO:0019752;carboxylic acid metabolic process;0.0028727796593227!GO:0043067;regulation of programmed cell death;0.00292831069417692!GO:0005791;rough endoplasmic reticulum;0.00294948557796129!GO:0006082;organic acid metabolic process;0.0029526638092879!GO:0033116;ER-Golgi intermediate compartment membrane;0.00305669027197929!GO:0000792;heterochromatin;0.00305669027197929!GO:0044262;cellular carbohydrate metabolic process;0.00310228531871138!GO:0030036;actin cytoskeleton organization and biogenesis;0.00329006220167912!GO:0005905;coated pit;0.00337649374472106!GO:0048500;signal recognition particle;0.00345056735141378!GO:0040029;regulation of gene expression, epigenetic;0.00345056735141378!GO:0006405;RNA export from nucleus;0.00345731616613577!GO:0006275;regulation of DNA replication;0.00348079909622083!GO:0005637;nuclear inner membrane;0.00348541709741997!GO:0000178;exosome (RNase complex);0.00348926012906168!GO:0008022;protein C-terminus binding;0.00360099706912709!GO:0043488;regulation of mRNA stability;0.00360457994771491!GO:0043487;regulation of RNA stability;0.00360457994771491!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00366805703507611!GO:0005885;Arp2/3 protein complex;0.00386032073686508!GO:0018196;peptidyl-asparagine modification;0.00395998297889527!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00395998297889527!GO:0009892;negative regulation of metabolic process;0.00407913297633318!GO:0006338;chromatin remodeling;0.00410526009910258!GO:0006916;anti-apoptosis;0.00432050150268348!GO:0008312;7S RNA binding;0.00443263784664613!GO:0008287;protein serine/threonine phosphatase complex;0.00443263784664613!GO:0005741;mitochondrial outer membrane;0.00445841425729799!GO:0016251;general RNA polymerase II transcription factor activity;0.00447753778707308!GO:0050178;phenylpyruvate tautomerase activity;0.00449237781656549!GO:0006595;polyamine metabolic process;0.00464301248351447!GO:0031072;heat shock protein binding;0.00468044188083206!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00474066458088593!GO:0031323;regulation of cellular metabolic process;0.00526250580540225!GO:0032200;telomere organization and biogenesis;0.0052800953830972!GO:0000723;telomere maintenance;0.0052800953830972!GO:0006611;protein export from nucleus;0.00539530664480575!GO:0065009;regulation of a molecular function;0.00540010343806093!GO:0000725;recombinational repair;0.00544530874044847!GO:0000724;double-strand break repair via homologous recombination;0.00544530874044847!GO:0009451;RNA modification;0.0056384226311058!GO:0051287;NAD binding;0.00567355716940438!GO:0030119;AP-type membrane coat adaptor complex;0.00574176390201286!GO:0016564;transcription repressor activity;0.00576851542878699!GO:0031570;DNA integrity checkpoint;0.00583585093010934!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00583585093010934!GO:0015002;heme-copper terminal oxidase activity;0.00583585093010934!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00583585093010934!GO:0004129;cytochrome-c oxidase activity;0.00583585093010934!GO:0006695;cholesterol biosynthetic process;0.00585897397938172!GO:0030658;transport vesicle membrane;0.00602451633564557!GO:0001824;blastocyst development;0.00608812590579723!GO:0046474;glycerophospholipid biosynthetic process;0.00631367347470967!GO:0043596;nuclear replication fork;0.00644047462672716!GO:0004674;protein serine/threonine kinase activity;0.00644580766461543!GO:0004532;exoribonuclease activity;0.00646749270729673!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00646749270729673!GO:0006350;transcription;0.00647389703295893!GO:0000228;nuclear chromosome;0.00647389703295893!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00647389703295893!GO:0003713;transcription coactivator activity;0.00660882950186006!GO:0005758;mitochondrial intermembrane space;0.00667872131616092!GO:0008092;cytoskeletal protein binding;0.00684303849306933!GO:0031968;organelle outer membrane;0.00687425460707966!GO:0032594;protein transport within lipid bilayer;0.00695188243274797!GO:0032907;transforming growth factor-beta3 production;0.00695188243274797!GO:0032596;protein transport into lipid raft;0.00695188243274797!GO:0032910;regulation of transforming growth factor-beta3 production;0.00695188243274797!GO:0032595;B cell receptor transport within lipid bilayer;0.00695188243274797!GO:0033606;chemokine receptor transport within lipid bilayer;0.00695188243274797!GO:0032600;chemokine receptor transport out of lipid raft;0.00695188243274797!GO:0032599;protein transport out of lipid raft;0.00695188243274797!GO:0032597;B cell receptor transport into lipid raft;0.00695188243274797!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.00695188243274797!GO:0003711;transcription elongation regulator activity;0.00701284614376104!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00711255228891118!GO:0045047;protein targeting to ER;0.00711255228891118!GO:0051540;metal cluster binding;0.00743348910630628!GO:0051536;iron-sulfur cluster binding;0.00743348910630628!GO:0008139;nuclear localization sequence binding;0.00772105620090696!GO:0004518;nuclease activity;0.00784518793903297!GO:0030131;clathrin adaptor complex;0.00788550237413932!GO:0007021;tubulin folding;0.00789258098858181!GO:0046467;membrane lipid biosynthetic process;0.00809770708914984!GO:0003714;transcription corepressor activity;0.00837536488649212!GO:0019867;outer membrane;0.00848926176186224!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00855647670894041!GO:0006007;glucose catabolic process;0.0085595050207905!GO:0042393;histone binding;0.00885032829982837!GO:0031124;mRNA 3'-end processing;0.00893493089121277!GO:0016584;nucleosome positioning;0.0090137128789798!GO:0015992;proton transport;0.00902444838560721!GO:0005669;transcription factor TFIID complex;0.00911973686736612!GO:0043022;ribosome binding;0.00912024733079074!GO:0004722;protein serine/threonine phosphatase activity;0.00923431206524427!GO:0005832;chaperonin-containing T-complex;0.0092761596791281!GO:0009081;branched chain family amino acid metabolic process;0.0092761596791281!GO:0005876;spindle microtubule;0.00931124565754991!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00931709625238027!GO:0050662;coenzyme binding;0.00948836822501603!GO:0008180;signalosome;0.00948836822501603!GO:0030027;lamellipodium;0.00954246354575978!GO:0048519;negative regulation of biological process;0.00979613699077297!GO:0031970;organelle envelope lumen;0.00979613699077297!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00993427322237068!GO:0031577;spindle checkpoint;0.00997845590344093!GO:0006270;DNA replication initiation;0.0100328648571202!GO:0006220;pyrimidine nucleotide metabolic process;0.0102196956703756!GO:0006818;hydrogen transport;0.0102875322508966!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0105502020633867!GO:0044454;nuclear chromosome part;0.0106433323566342!GO:0019899;enzyme binding;0.0106557109515272!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0111142336789168!GO:0000209;protein polyubiquitination;0.0111616355280559!GO:0030029;actin filament-based process;0.0111616355280559!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0115936948074773!GO:0003746;translation elongation factor activity;0.0115963778099857!GO:0004003;ATP-dependent DNA helicase activity;0.011662651485042!GO:0009119;ribonucleoside metabolic process;0.0117052384573161!GO:0000922;spindle pole;0.0124774990400318!GO:0009064;glutamine family amino acid metabolic process;0.0124953676411925!GO:0006378;mRNA polyadenylation;0.0127206231274934!GO:0022890;inorganic cation transmembrane transporter activity;0.0127206231274934!GO:0000097;sulfur amino acid biosynthetic process;0.0127335881939883!GO:0051789;response to protein stimulus;0.0127335881939883!GO:0006986;response to unfolded protein;0.0127335881939883!GO:0008408;3'-5' exonuclease activity;0.0128485914118267!GO:0000339;RNA cap binding;0.0128562950098823!GO:0000070;mitotic sister chromatid segregation;0.0130486946010711!GO:0044450;microtubule organizing center part;0.0131456468021117!GO:0030660;Golgi-associated vesicle membrane;0.01317773069864!GO:0045947;negative regulation of translational initiation;0.01317773069864!GO:0016563;transcription activator activity;0.01317773069864!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0132753367352754!GO:0015399;primary active transmembrane transporter activity;0.0132753367352754!GO:0045045;secretory pathway;0.0133957483578659!GO:0016044;membrane organization and biogenesis;0.0134021016334498!GO:0019783;small conjugating protein-specific protease activity;0.0135281292991664!GO:0009303;rRNA transcription;0.0135281292991664!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0137930757797893!GO:0016311;dephosphorylation;0.0139978035125457!GO:0030176;integral to endoplasmic reticulum membrane;0.0149074393773391!GO:0022884;macromolecule transmembrane transporter activity;0.0152671474320899!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0152671474320899!GO:0000819;sister chromatid segregation;0.0153650977803373!GO:0042770;DNA damage response, signal transduction;0.0153650977803373!GO:0030134;ER to Golgi transport vesicle;0.0158074326359772!GO:0035258;steroid hormone receptor binding;0.0158860687306523!GO:0006733;oxidoreduction coenzyme metabolic process;0.0160109418752718!GO:0006289;nucleotide-excision repair;0.0167380175364305!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.016983262658337!GO:0008629;induction of apoptosis by intracellular signals;0.0173175431690653!GO:0001726;ruffle;0.0175400772232443!GO:0006091;generation of precursor metabolites and energy;0.017725087231822!GO:0051053;negative regulation of DNA metabolic process;0.0177818421743026!GO:0000790;nuclear chromatin;0.017857399274867!GO:0043284;biopolymer biosynthetic process;0.0179462110268015!GO:0016835;carbon-oxygen lyase activity;0.0180030526181473!GO:0004843;ubiquitin-specific protease activity;0.0180456937177941!GO:0030133;transport vesicle;0.0180456937177941!GO:0000159;protein phosphatase type 2A complex;0.0181210157427048!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0185579034696346!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0191273847875167!GO:0010257;NADH dehydrogenase complex assembly;0.0191273847875167!GO:0033108;mitochondrial respiratory chain complex assembly;0.0191273847875167!GO:0016791;phosphoric monoester hydrolase activity;0.019376590915884!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0197947784861784!GO:0008632;apoptotic program;0.0199542189519998!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0201359531977113!GO:0008320;protein transmembrane transporter activity;0.02029386267682!GO:0016301;kinase activity;0.0207503907987547!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0210380326424287!GO:0005732;small nucleolar ribonucleoprotein complex;0.0211215630749647!GO:0006400;tRNA modification;0.0211257670306715!GO:0000082;G1/S transition of mitotic cell cycle;0.021223657781495!GO:0048037;cofactor binding;0.0217228925579685!GO:0004221;ubiquitin thiolesterase activity;0.0220660048557072!GO:0005652;nuclear lamina;0.0221821820921301!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0222958384304188!GO:0005663;DNA replication factor C complex;0.0223267075979449!GO:0030496;midbody;0.0223267075979449!GO:0008601;protein phosphatase type 2A regulator activity;0.02275238684861!GO:0005996;monosaccharide metabolic process;0.0229606711452666!GO:0030127;COPII vesicle coat;0.0230327416696302!GO:0012507;ER to Golgi transport vesicle membrane;0.0230327416696302!GO:0016481;negative regulation of transcription;0.0231383358648414!GO:0042769;DNA damage response, detection of DNA damage;0.0232726661490085!GO:0000077;DNA damage checkpoint;0.0234489812376587!GO:0030521;androgen receptor signaling pathway;0.0242149147647136!GO:0005938;cell cortex;0.0245247043352945!GO:0043601;nuclear replisome;0.0245575126660333!GO:0030894;replisome;0.0245575126660333!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.024714525448952!GO:0045039;protein import into mitochondrial inner membrane;0.024714525448952!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0247318217736388!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0247882517485899!GO:0000781;chromosome, telomeric region;0.0249414765492858!GO:0008610;lipid biosynthetic process;0.0250005540628144!GO:0046365;monosaccharide catabolic process;0.0253364565604504!GO:0012506;vesicle membrane;0.0258216565383476!GO:0030132;clathrin coat of coated pit;0.026099425224641!GO:0009308;amine metabolic process;0.026099425224641!GO:0030663;COPI coated vesicle membrane;0.0261296960470593!GO:0030126;COPI vesicle coat;0.0261296960470593!GO:0031123;RNA 3'-end processing;0.0261329752196407!GO:0046128;purine ribonucleoside metabolic process;0.0263219897057919!GO:0042278;purine nucleoside metabolic process;0.0263219897057919!GO:0000175;3'-5'-exoribonuclease activity;0.0273112710433462!GO:0006740;NADPH regeneration;0.0276478359257948!GO:0006098;pentose-phosphate shunt;0.0276478359257948!GO:0010468;regulation of gene expression;0.0281603739674985!GO:0004721;phosphoprotein phosphatase activity;0.0285252481630287!GO:0007004;telomere maintenance via telomerase;0.028730894928056!GO:0019318;hexose metabolic process;0.0290642937623916!GO:0006376;mRNA splice site selection;0.0290642937623916!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0290642937623916!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0293073339058015!GO:0006807;nitrogen compound metabolic process;0.0295819685792453!GO:0009124;nucleoside monophosphate biosynthetic process;0.0296994220806948!GO:0009123;nucleoside monophosphate metabolic process;0.0296994220806948!GO:0008213;protein amino acid alkylation;0.0296994220806948!GO:0006479;protein amino acid methylation;0.0296994220806948!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0296994220806948!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0296994220806948!GO:0008538;proteasome activator activity;0.0299019897132262!GO:0006650;glycerophospholipid metabolic process;0.0307956735645742!GO:0005862;muscle thin filament tropomyosin;0.0309100177259677!GO:0006607;NLS-bearing substrate import into nucleus;0.0310482299759241!GO:0008017;microtubule binding;0.0314169732549409!GO:0030659;cytoplasmic vesicle membrane;0.0318835935009888!GO:0017134;fibroblast growth factor binding;0.0327346695619941!GO:0016790;thiolester hydrolase activity;0.0332254307658773!GO:0007018;microtubule-based movement;0.0333125061104597!GO:0009066;aspartate family amino acid metabolic process;0.0333734067143116!GO:0001889;liver development;0.0336935713395796!GO:0016408;C-acyltransferase activity;0.0337643210321018!GO:0051656;establishment of organelle localization;0.0337808502640383!GO:0030137;COPI-coated vesicle;0.0339805001333659!GO:0016407;acetyltransferase activity;0.0342683360621268!GO:0005784;translocon complex;0.0343410099875927!GO:0008097;5S rRNA binding;0.0344477562267217!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0356653723074121!GO:0044433;cytoplasmic vesicle part;0.0357215639773604!GO:0043086;negative regulation of catalytic activity;0.0357215639773604!GO:0046426;negative regulation of JAK-STAT cascade;0.0357215639773604!GO:0000910;cytokinesis;0.0360653254233669!GO:0003756;protein disulfide isomerase activity;0.0361000684154493!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0361000684154493!GO:0046966;thyroid hormone receptor binding;0.0370796879466014!GO:0031369;translation initiation factor binding;0.0371024883754004!GO:0046489;phosphoinositide biosynthetic process;0.0379821782654594!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0385927837825885!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0385927837825885!GO:0051098;regulation of binding;0.0386031227885342!GO:0001725;stress fiber;0.0386959621823142!GO:0032432;actin filament bundle;0.0386959621823142!GO:0006096;glycolysis;0.0393600531677994!GO:0019320;hexose catabolic process;0.0397507145652481!GO:0006278;RNA-dependent DNA replication;0.0397967498918116!GO:0009113;purine base biosynthetic process;0.0402720305529312!GO:0050811;GABA receptor binding;0.0403704021333949!GO:0009083;branched chain family amino acid catabolic process;0.0407780163397076!GO:0016585;chromatin remodeling complex;0.0408511551087489!GO:0035267;NuA4 histone acetyltransferase complex;0.0413382219768096!GO:0031371;ubiquitin conjugating enzyme complex;0.0417722929166837!GO:0017166;vinculin binding;0.0417722929166837!GO:0004523;ribonuclease H activity;0.0421886987555589!GO:0009262;deoxyribonucleotide metabolic process;0.0422737427213182!GO:0046164;alcohol catabolic process;0.0423176958136303!GO:0000726;non-recombinational repair;0.0425790234582558!GO:0031902;late endosome membrane;0.0425823619072158!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0439678803661566!GO:0043189;H4/H2A histone acetyltransferase complex;0.0445943692009685!GO:0000123;histone acetyltransferase complex;0.0459990933240336!GO:0008637;apoptotic mitochondrial changes;0.0460371224686367!GO:0043624;cellular protein complex disassembly;0.0460841084179901!GO:0008276;protein methyltransferase activity;0.0461192173472688!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0462023368949391!GO:0006749;glutathione metabolic process;0.0462023368949391!GO:0005666;DNA-directed RNA polymerase III complex;0.0463604169107478!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0468546799626036!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0468546799626036!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0468546799626036!GO:0008190;eukaryotic initiation factor 4E binding;0.0470224851626706!GO:0006470;protein amino acid dephosphorylation;0.0472167185018472!GO:0006672;ceramide metabolic process;0.0476666759232395!GO:0050790;regulation of catalytic activity;0.0478247970733782!GO:0004239;methionyl aminopeptidase activity;0.0480152430505459!GO:0032984;macromolecular complex disassembly;0.0484366641848843 | |||
|sample_id=13425 | |sample_id=13425 | ||
|sample_note= | |sample_note= | ||
| Line 75: | Line 99: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue= | |sample_tissue= | ||
|time= day00 | |||
|timecourse=Human_iPS_to_neuron_(wt)_1 | |||
|top_motifs=OCT4_SOX2{dimer}:3.41377740934;POU2F1..3:2.03513282887;NFY{A,B,C}:2.01839366611;PBX1:1.87758962157;SOX{8,9,10}:1.75047071396;SP1:1.72342575427;T:1.69700135695;E2F1..5:1.62371791588;SNAI1..3:1.51704151686;CUX2:1.44546436949;XCPE1{core}:1.33951878468;FOX{I1,J2}:1.30096343203;GFI1:1.292895771;PATZ1:1.24651112597;SOX2:1.23857587188;NKX6-1,2:1.17037665747;ZEB1:1.10004573093;ONECUT1,2:1.04693708079;MYOD1:1.04568648853;PITX1..3:1.04072869042;CDX1,2,4:1.03947467668;FOXP1:1.03570750203;ZNF143:1.03164084306;IKZF2:0.96987855446;LEF1_TCF7_TCF7L1,2:0.914655313909;SOX17:0.901326777547;TFDP1:0.889867597992;bHLH_family:0.837977890163;CDC5L:0.823862202628;RORA:0.807362098455;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.800059963042;TOPORS:0.799527325355;POU3F1..4:0.794652097475;ATF4:0.764154680552;RBPJ:0.725435789176;LMO2:0.71682720219;TBP:0.71298459777;AIRE:0.678943647316;MZF1:0.676546750633;FOXD3:0.623398332394;ARID5B:0.603089867571;HOX{A4,D4}:0.583364023282;ZIC1..3:0.554092622267;EVI1:0.537368319012;ZNF384:0.522654616572;PAX8:0.502178585875;ELK1,4_GABP{A,B1}:0.500689732293;NRF1:0.488668809213;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.480390616819;FOXQ1:0.471842273859;EBF1:0.471288366488;VSX1,2:0.467099013764;YY1:0.449599186384;FOXL1:0.421535496441;ZFP161:0.400151702293;POU5F1:0.396775555722;STAT5{A,B}:0.374737341864;PAX1,9:0.366639585404;NKX2-3_NKX2-5:0.338297108379;ALX1:0.323424621577;KLF4:0.300307792814;NANOG:0.296408996503;MAZ:0.287267480833;UFEwm:0.270016059105;TBX4,5:0.269017534907;ZBTB16:0.262216023809;MTF1:0.165789180929;MYB:0.159657225637;GFI1B:0.154791108559;FOXM1:0.142303168309;LHX3,4:0.132650729994;HOX{A6,A7,B6,B7}:0.0926036596823;HIC1:0.0731826861946;TEAD1:0.0644578136578;NKX2-2,8:0.0590956149299;CREB1:0.0508600495771;MYFfamily:0.0402681517012;JUN:0.0151148455086;MTE{core}:0.00896993026235;TFAP2B:0.00559272786218;HNF4A_NR2F1,2:0.00539505986332;EN1,2:0.00481098916486;REST:-0.000991556945762;BREu{core}:-0.00274007913784;NR5A1,2:-0.00592661935385;CRX:-0.00634259322337;GATA4:-0.108631496736;TP53:-0.129797278281;PAX4:-0.130521253033;PAX5:-0.133230834067;NANOG{mouse}:-0.140930091408;GATA6:-0.155286534707;RFX1:-0.159275276037;ATF5_CREB3:-0.164684507227;RREB1:-0.169628035141;HAND1,2:-0.169872899206;FOXN1:-0.170504579864;FOX{F1,F2,J1}:-0.18120740248;MYBL2:-0.181802751533;STAT1,3:-0.200226984684;MED-1{core}:-0.20642836199;SREBF1,2:-0.208636970266;FOXP3:-0.224970012683;RXR{A,B,G}:-0.231423120884;HOX{A5,B5}:-0.239811043484;ZBTB6:-0.265996246883;ATF2:-0.268054431638;HNF1A:-0.277293408297;POU6F1:-0.27907900392;NKX2-1,4:-0.287491458744;XBP1:-0.292262992986;PAX2:-0.30294382407;PAX3,7:-0.30561058451;POU1F1:-0.349365324066;NKX3-1:-0.354968123675;PRDM1:-0.363133896629;DBP:-0.375082612508;GTF2I:-0.413874177848;ZNF423:-0.424135188599;NFKB1_REL_RELA:-0.427881966543;TFAP4:-0.431747128972;PPARG:-0.435862367433;HIF1A:-0.440957662336;TFAP2{A,C}:-0.445305426133;GCM1,2:-0.459027936801;GTF2A1,2:-0.459257798127;NHLH1,2:-0.461668736788;ESRRA:-0.466138381473;TEF:-0.490563974501;MEF2{A,B,C,D}:-0.520782360609;PRRX1,2:-0.571681316417;HMGA1,2:-0.571986344997;BACH2:-0.577383460413;EGR1..3:-0.593264712234;IKZF1:-0.595591836894;ADNP_IRX_SIX_ZHX:-0.601121302772;NFE2:-0.632618715863;FOX{D1,D2}:-0.65870690489;FOXO1,3,4:-0.673400384442;NFE2L2:-0.700052129915;RFX2..5_RFXANK_RFXAP:-0.703662998916;SPI1:-0.706701686332;HSF1,2:-0.726586016308;FOS_FOS{B,L1}_JUN{B,D}:-0.727747056797;DMAP1_NCOR{1,2}_SMARC:-0.737584196991;SPIB:-0.744289125322;FOSL2:-0.751572762336;AR:-0.755555320639;NR6A1:-0.758726312037;SRF:-0.775853018956;ESR1:-0.776251092239;NKX3-2:-0.777434929953;RUNX1..3:-0.781490805977;ALX4:-0.792983986758;NR1H4:-0.817775293218;SOX5:-0.832281294079;ZNF238:-0.885832901694;PAX6:-0.899139939619;NFE2L1:-0.903002104755;ELF1,2,4:-0.907197345847;HBP1_HMGB_SSRP1_UBTF:-0.92139448332;ZNF148:-0.922594898437;HOXA9_MEIS1:-0.948857101747;SPZ1:-0.950135926599;NFIX:-0.950694987463;ETS1,2:-0.968208009391;HMX1:-0.969588498717;HLF:-0.970692530357;RXRA_VDR{dimer}:-0.98449395072;NR3C1:-1.00487226401;CEBPA,B_DDIT3:-1.05688015415;HES1:-1.07869444521;FOXA2:-1.09411661871;NFIL3:-1.09504904149;AHR_ARNT_ARNT2:-1.1135311383;ATF6:-1.23687236793;TFCP2:-1.26080336583;IRF7:-1.27997384346;BPTF:-1.28161859904;TLX2:-1.30516903019;IRF1,2:-1.30669461144;GZF1:-1.36271689108;GLI1..3:-1.48730182719;STAT2,4,6:-1.48735159049;MAFB:-1.51739409662;TLX1..3_NFIC{dimer}:-1.51740886819;TAL1_TCF{3,4,12}:-1.54754520732;NFATC1..3:-1.56829627397;TGIF1:-1.74459270459;EP300:-1.88855720428;PDX1:-2.02058823746;SMAD1..7,9:-2.07073592358 | |top_motifs=OCT4_SOX2{dimer}:3.41377740934;POU2F1..3:2.03513282887;NFY{A,B,C}:2.01839366611;PBX1:1.87758962157;SOX{8,9,10}:1.75047071396;SP1:1.72342575427;T:1.69700135695;E2F1..5:1.62371791588;SNAI1..3:1.51704151686;CUX2:1.44546436949;XCPE1{core}:1.33951878468;FOX{I1,J2}:1.30096343203;GFI1:1.292895771;PATZ1:1.24651112597;SOX2:1.23857587188;NKX6-1,2:1.17037665747;ZEB1:1.10004573093;ONECUT1,2:1.04693708079;MYOD1:1.04568648853;PITX1..3:1.04072869042;CDX1,2,4:1.03947467668;FOXP1:1.03570750203;ZNF143:1.03164084306;IKZF2:0.96987855446;LEF1_TCF7_TCF7L1,2:0.914655313909;SOX17:0.901326777547;TFDP1:0.889867597992;bHLH_family:0.837977890163;CDC5L:0.823862202628;RORA:0.807362098455;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.800059963042;TOPORS:0.799527325355;POU3F1..4:0.794652097475;ATF4:0.764154680552;RBPJ:0.725435789176;LMO2:0.71682720219;TBP:0.71298459777;AIRE:0.678943647316;MZF1:0.676546750633;FOXD3:0.623398332394;ARID5B:0.603089867571;HOX{A4,D4}:0.583364023282;ZIC1..3:0.554092622267;EVI1:0.537368319012;ZNF384:0.522654616572;PAX8:0.502178585875;ELK1,4_GABP{A,B1}:0.500689732293;NRF1:0.488668809213;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.480390616819;FOXQ1:0.471842273859;EBF1:0.471288366488;VSX1,2:0.467099013764;YY1:0.449599186384;FOXL1:0.421535496441;ZFP161:0.400151702293;POU5F1:0.396775555722;STAT5{A,B}:0.374737341864;PAX1,9:0.366639585404;NKX2-3_NKX2-5:0.338297108379;ALX1:0.323424621577;KLF4:0.300307792814;NANOG:0.296408996503;MAZ:0.287267480833;UFEwm:0.270016059105;TBX4,5:0.269017534907;ZBTB16:0.262216023809;MTF1:0.165789180929;MYB:0.159657225637;GFI1B:0.154791108559;FOXM1:0.142303168309;LHX3,4:0.132650729994;HOX{A6,A7,B6,B7}:0.0926036596823;HIC1:0.0731826861946;TEAD1:0.0644578136578;NKX2-2,8:0.0590956149299;CREB1:0.0508600495771;MYFfamily:0.0402681517012;JUN:0.0151148455086;MTE{core}:0.00896993026235;TFAP2B:0.00559272786218;HNF4A_NR2F1,2:0.00539505986332;EN1,2:0.00481098916486;REST:-0.000991556945762;BREu{core}:-0.00274007913784;NR5A1,2:-0.00592661935385;CRX:-0.00634259322337;GATA4:-0.108631496736;TP53:-0.129797278281;PAX4:-0.130521253033;PAX5:-0.133230834067;NANOG{mouse}:-0.140930091408;GATA6:-0.155286534707;RFX1:-0.159275276037;ATF5_CREB3:-0.164684507227;RREB1:-0.169628035141;HAND1,2:-0.169872899206;FOXN1:-0.170504579864;FOX{F1,F2,J1}:-0.18120740248;MYBL2:-0.181802751533;STAT1,3:-0.200226984684;MED-1{core}:-0.20642836199;SREBF1,2:-0.208636970266;FOXP3:-0.224970012683;RXR{A,B,G}:-0.231423120884;HOX{A5,B5}:-0.239811043484;ZBTB6:-0.265996246883;ATF2:-0.268054431638;HNF1A:-0.277293408297;POU6F1:-0.27907900392;NKX2-1,4:-0.287491458744;XBP1:-0.292262992986;PAX2:-0.30294382407;PAX3,7:-0.30561058451;POU1F1:-0.349365324066;NKX3-1:-0.354968123675;PRDM1:-0.363133896629;DBP:-0.375082612508;GTF2I:-0.413874177848;ZNF423:-0.424135188599;NFKB1_REL_RELA:-0.427881966543;TFAP4:-0.431747128972;PPARG:-0.435862367433;HIF1A:-0.440957662336;TFAP2{A,C}:-0.445305426133;GCM1,2:-0.459027936801;GTF2A1,2:-0.459257798127;NHLH1,2:-0.461668736788;ESRRA:-0.466138381473;TEF:-0.490563974501;MEF2{A,B,C,D}:-0.520782360609;PRRX1,2:-0.571681316417;HMGA1,2:-0.571986344997;BACH2:-0.577383460413;EGR1..3:-0.593264712234;IKZF1:-0.595591836894;ADNP_IRX_SIX_ZHX:-0.601121302772;NFE2:-0.632618715863;FOX{D1,D2}:-0.65870690489;FOXO1,3,4:-0.673400384442;NFE2L2:-0.700052129915;RFX2..5_RFXANK_RFXAP:-0.703662998916;SPI1:-0.706701686332;HSF1,2:-0.726586016308;FOS_FOS{B,L1}_JUN{B,D}:-0.727747056797;DMAP1_NCOR{1,2}_SMARC:-0.737584196991;SPIB:-0.744289125322;FOSL2:-0.751572762336;AR:-0.755555320639;NR6A1:-0.758726312037;SRF:-0.775853018956;ESR1:-0.776251092239;NKX3-2:-0.777434929953;RUNX1..3:-0.781490805977;ALX4:-0.792983986758;NR1H4:-0.817775293218;SOX5:-0.832281294079;ZNF238:-0.885832901694;PAX6:-0.899139939619;NFE2L1:-0.903002104755;ELF1,2,4:-0.907197345847;HBP1_HMGB_SSRP1_UBTF:-0.92139448332;ZNF148:-0.922594898437;HOXA9_MEIS1:-0.948857101747;SPZ1:-0.950135926599;NFIX:-0.950694987463;ETS1,2:-0.968208009391;HMX1:-0.969588498717;HLF:-0.970692530357;RXRA_VDR{dimer}:-0.98449395072;NR3C1:-1.00487226401;CEBPA,B_DDIT3:-1.05688015415;HES1:-1.07869444521;FOXA2:-1.09411661871;NFIL3:-1.09504904149;AHR_ARNT_ARNT2:-1.1135311383;ATF6:-1.23687236793;TFCP2:-1.26080336583;IRF7:-1.27997384346;BPTF:-1.28161859904;TLX2:-1.30516903019;IRF1,2:-1.30669461144;GZF1:-1.36271689108;GLI1..3:-1.48730182719;STAT2,4,6:-1.48735159049;MAFB:-1.51739409662;TLX1..3_NFIC{dimer}:-1.51740886819;TAL1_TCF{3,4,12}:-1.54754520732;NFATC1..3:-1.56829627397;TGIF1:-1.74459270459;EP300:-1.88855720428;PDX1:-2.02058823746;SMAD1..7,9:-2.07073592358 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:13425-144D5;search_select_hide=table117:FF:13425-144D5 | |||
}} | }} | ||
Latest revision as of 18:58, 4 June 2020
| Name: | iPS differentiation to neuron, control donor C11-CRL2429 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13822 |
| Sample type: | time courses |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13822
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13822
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.102 |
| 10 | 10 | 0.15 |
| 100 | 100 | 0.494 |
| 101 | 101 | 0.638 |
| 102 | 102 | 0.635 |
| 103 | 103 | 0.0403 |
| 104 | 104 | 0.601 |
| 105 | 105 | 0.232 |
| 106 | 106 | 0.0499 |
| 107 | 107 | 0.557 |
| 108 | 108 | 0.966 |
| 109 | 109 | 0.254 |
| 11 | 11 | 0.191 |
| 110 | 110 | 0.307 |
| 111 | 111 | 0.0256 |
| 112 | 112 | 0.214 |
| 113 | 113 | 0.141 |
| 114 | 114 | 0.0237 |
| 115 | 115 | 0.493 |
| 116 | 116 | 0.84 |
| 117 | 117 | 0.33 |
| 118 | 118 | 0.647 |
| 119 | 119 | 0.209 |
| 12 | 12 | 0.907 |
| 120 | 120 | 0.91 |
| 121 | 121 | 0.451 |
| 122 | 122 | 0.787 |
| 123 | 123 | 0.796 |
| 124 | 124 | 0.223 |
| 125 | 125 | 0.787 |
| 126 | 126 | 0.484 |
| 127 | 127 | 0.308 |
| 128 | 128 | 0.372 |
| 129 | 129 | 0.252 |
| 13 | 13 | 0.882 |
| 130 | 130 | 0.42 |
| 131 | 131 | 0.692 |
| 132 | 132 | 0.818 |
| 133 | 133 | 0.069 |
| 134 | 134 | 0.481 |
| 135 | 135 | 7.36777e-4 |
| 136 | 136 | 0.0566 |
| 137 | 137 | 0.44 |
| 138 | 138 | 0.207 |
| 139 | 139 | 0.0182 |
| 14 | 14 | 0.816 |
| 140 | 140 | 0.0777 |
| 141 | 141 | 0.36 |
| 142 | 142 | 0.301 |
| 143 | 143 | 0.00566 |
| 144 | 144 | 0.629 |
| 145 | 145 | 0.553 |
| 146 | 146 | 0.51 |
| 147 | 147 | 0.709 |
| 148 | 148 | 0.0198 |
| 149 | 149 | 0.00956 |
| 15 | 15 | 0.0911 |
| 150 | 150 | 0.64 |
| 151 | 151 | 0.0644 |
| 152 | 152 | 0.782 |
| 153 | 153 | 0.169 |
| 154 | 154 | 0.534 |
| 155 | 155 | 0.854 |
| 156 | 156 | 0.414 |
| 157 | 157 | 0.728 |
| 158 | 158 | 0.169 |
| 159 | 159 | 0.167 |
| 16 | 16 | 0.384 |
| 160 | 160 | 0.444 |
| 161 | 161 | 0.884 |
| 162 | 162 | 0.536 |
| 163 | 163 | 0.643 |
| 164 | 164 | 0.211 |
| 165 | 165 | 0.664 |
| 166 | 166 | 0.576 |
| 167 | 167 | 0.094 |
| 168 | 168 | 0.25 |
| 169 | 169 | 0.00131 |
| 17 | 17 | 0.14 |
| 18 | 18 | 0.137 |
| 19 | 19 | 0.18 |
| 2 | 2 | 0.348 |
| 20 | 20 | 0.864 |
| 21 | 21 | 0.785 |
| 22 | 22 | 0.0889 |
| 23 | 23 | 0.0141 |
| 24 | 24 | 0.614 |
| 25 | 25 | 0.458 |
| 26 | 26 | 0.834 |
| 27 | 27 | 0.243 |
| 28 | 28 | 0.929 |
| 29 | 29 | 0.674 |
| 3 | 3 | 0.138 |
| 30 | 30 | 0.891 |
| 31 | 31 | 0.798 |
| 32 | 32 | 0.0469 |
| 33 | 33 | 0.837 |
| 34 | 34 | 0.52 |
| 35 | 35 | 0.249 |
| 36 | 36 | 0.709 |
| 37 | 37 | 0.236 |
| 38 | 38 | 0.254 |
| 39 | 39 | 0.827 |
| 4 | 4 | 0.698 |
| 40 | 40 | 0.71 |
| 41 | 41 | 0.098 |
| 42 | 42 | 0.305 |
| 43 | 43 | 0.111 |
| 44 | 44 | 0.799 |
| 45 | 45 | 0.377 |
| 46 | 46 | 0.0532 |
| 47 | 47 | 0.829 |
| 48 | 48 | 0.677 |
| 49 | 49 | 0.0884 |
| 5 | 5 | 0.112 |
| 50 | 50 | 0.99 |
| 51 | 51 | 0.44 |
| 52 | 52 | 0.461 |
| 53 | 53 | 0.445 |
| 54 | 54 | 0.345 |
| 55 | 55 | 0.0511 |
| 56 | 56 | 0.517 |
| 57 | 57 | 0.589 |
| 58 | 58 | 0.0967 |
| 59 | 59 | 0.188 |
| 6 | 6 | 0.76 |
| 60 | 60 | 0.073 |
| 61 | 61 | 0.934 |
| 62 | 62 | 0.0277 |
| 63 | 63 | 0.127 |
| 64 | 64 | 0.366 |
| 65 | 65 | 0.0837 |
| 66 | 66 | 0.513 |
| 67 | 67 | 0.257 |
| 68 | 68 | 0.871 |
| 69 | 69 | 0.716 |
| 7 | 7 | 0.52 |
| 70 | 70 | 0.0115 |
| 71 | 71 | 0.079 |
| 72 | 72 | 0.514 |
| 73 | 73 | 0.272 |
| 74 | 74 | 0.371 |
| 75 | 75 | 0.133 |
| 76 | 76 | 0.471 |
| 77 | 77 | 0.237 |
| 78 | 78 | 0.704 |
| 79 | 79 | 0.107 |
| 8 | 8 | 0.206 |
| 80 | 80 | 0.0645 |
| 81 | 81 | 0.331 |
| 82 | 82 | 0.134 |
| 83 | 83 | 0.639 |
| 84 | 84 | 0.495 |
| 85 | 85 | 0.0422 |
| 86 | 86 | 0.518 |
| 87 | 87 | 0.0782 |
| 88 | 88 | 0.828 |
| 89 | 89 | 0.0243 |
| 9 | 9 | 0.0993 |
| 90 | 90 | 0.349 |
| 91 | 91 | 0.176 |
| 92 | 92 | 0.0236 |
| 93 | 93 | 0.114 |
| 94 | 94 | 0.0909 |
| 95 | 95 | 0.948 |
| 96 | 96 | 0.0474 |
| 97 | 97 | 0.659 |
| 98 | 98 | 0.241 |
| 99 | 99 | 0.576 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13822
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000540 (neuron)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000393 (electrically responsive cell)
0000211 (electrically active cell)
0000404 (electrically signaling cell)
0000255 (eukaryotic cell)
FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0200005 (iPS differentiation to neuron sample)
0200003 (iPS differentiation to neuron, control sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000031 (neuroblast)
CL:0000221 (ectodermal cell)
