FFCP PHASE1:Hg19::chr13:28024374..28024401,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:28024374..28024401,+ | |||
|coexpression_cluster_id=C1704 | |||
|description=CAGE_peak_at_chr13:28024374..28024401,+ | |description=CAGE_peak_at_chr13:28024374..28024401,+ | ||
|id=chr13:28024374..28024401,+ | |id=chr13:28024374..28024401,+ | ||
|ontology_enrichment_celltype=CL:0000988!9.03e-28!182;CL:0000738!4.61e-26!140;CL:0000037!1.63e-25!172;CL:0000566!1.63e-25!172;CL:0002087!2.32e-22!119;CL:0002032!4.71e-22!165;CL:0000837!4.71e-22!165;CL:0002031!2.41e-21!124;CL:0000542!1.81e-19!53;CL:0000051!1.81e-19!53;CL:0000838!3.08e-19!52;CL:0000791!1.14e-11!18;CL:0000789!1.14e-11!18;CL:0002420!1.14e-11!18;CL:0002419!1.14e-11!18;CL:0000790!1.14e-11!18;CL:0000084!1.27e-10!25;CL:0000827!1.27e-10!25;CL:0000236!1.15e-08!14;CL:0000945!3.42e-08!24;CL:0000826!3.42e-08!24;CL:0000625!5.05e-08!11;CL:0000763!6.16e-07!112;CL:0000049!6.16e-07!112;CL:0000134!9.46e-07!358 | |ontology_enrichment_celltype=CL:0000988!9.03e-28!182;CL:0000738!4.61e-26!140;CL:0000037!1.63e-25!172;CL:0000566!1.63e-25!172;CL:0002087!2.32e-22!119;CL:0002032!4.71e-22!165;CL:0000837!4.71e-22!165;CL:0002031!2.41e-21!124;CL:0000542!1.81e-19!53;CL:0000051!1.81e-19!53;CL:0000838!3.08e-19!52;CL:0000791!1.14e-11!18;CL:0000789!1.14e-11!18;CL:0002420!1.14e-11!18;CL:0002419!1.14e-11!18;CL:0000790!1.14e-11!18;CL:0000084!1.27e-10!25;CL:0000827!1.27e-10!25;CL:0000236!1.15e-08!14;CL:0000945!3.42e-08!24;CL:0000826!3.42e-08!24;CL:0000625!5.05e-08!11;CL:0000763!6.16e-07!112;CL:0000049!6.16e-07!112;CL:0000134!9.46e-07!358 | ||
|ontology_enrichment_celltype_v019=CL:0000791;5.25e-26;18!CL:0000789;5.25e-26;18!CL:0002419;5.25e-26;18!CL:0000084;2.85e-19;25!CL:0000236;1.19e-18;13!CL:0000542;4.33e-18;53!CL:0000625;1.46e-17;11!CL:0000624;5.79e-12;6!CL:0002087;4.87e-09;104!CL:0000945;1.36e-08;24!CL:0000738;1.90e-07;136!CL:0000784;3.70e-07;3!CL:0000898;4.65e-07;3!CL:0002393;8.11e-07;6!CL:0002397;8.11e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.82e-34,136;CL:0002087,4.83e-31,115;CL:0000838,5.91e-30,52;CL:0000542,3.51e-29,53;CL:0000051,3.51e-29,53;CL:0000037,1.22e-28,168;CL:0000988,2.99e-28,177;CL:0000791,1.95e-26,18;CL:0000789,1.95e-26,18;CL:0002420,1.95e-26,18;CL:0002419,1.95e-26,18;CL:0000790,1.95e-26,18;CL:0002031,3.14e-25,120;CL:0002032,1.97e-22,161;CL:0000837,1.97e-22,161;CL:0000084,1.81e-19,25;CL:0000827,1.81e-19,25;CL:0000625,6.06e-18,11;CL:0000236,2.83e-17,14;CL:0000624,4.94e-12,6;CL:0002393,2.29e-11,9;CL:0002397,2.29e-11,9;CL:0000945,1.06e-08,24;CL:0000826,1.06e-08,24;CL:0000134,2.35e-07,354;CL:0002320,2.69e-07,361;CL:0000784,3.66e-07,3;CL:0000898,4.52e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;5.25e-26;18!CL:0000051;4.33e-18;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.47e-10!102;UBERON:0003061!2.47e-10!102;UBERON:0002193!3.33e-10!112;UBERON:0000178!3.58e-07!15;UBERON:0000179!3.58e-07!15;UBERON:0000463!3.58e-07!15;UBERON:0002384!9.79e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.37e-07;15!UBERON:0000179;3.37e-07;15!UBERON:0000463;3.37e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.71e-08,98;UBERON:0003061,2.71e-08,98;UBERON:0000178,2.31e-07,15;UBERON:0000179,2.31e-07,15;UBERON:0000463,2.31e-07,15;UBERON:0002384,4.99e-07,371;UBERON:0002193,7.74e-07,108 | |||
|phase1_expression=0.181678379270557,0,0,0,1.34088328328186,0,0,0.631719873426831,0.261185628199839,0,0,0.436882744260345,0,0.123766352960047,0,0,0,0.730310090387373,0,0.61560529038394,0.408001382488506,0.940364164434263,0.286235987131057,0.136874425072884,0.125542639594803,0.229240217243854,0.410502947249729,0.314843125254717,1.96682138424452,1.53531759238885,1.39334510984468,0.919421224478927,0.30120591877825,0.739508020333575,0.774672005803016,0.142169232487422,2.93600439334847,0.553995408531877,1.00272223735071,2.17010870715852,0.895661896959697,0.32389366601898,1.03030227053675,1.30858414901608,0,0.242584061187816,0.232429036905685,0.411167888021826,0.309706370895104,0,0,0.236482229888585,0.344745680736619,0.645484683583826,0,0.188242339542605,0.272906150057846,0.898893937780338,0,0.962787081228281,0,1.31940520074686,0,1.27867425159808,0.290209238628584,0,0.622822248995575,0.251248665256743,2.60741459210101,0.868755378820466,0,0.368277635987565,0.949387162322653,2.74631872205524,1.4882300997553,3.35453832813401,3.70684482783434,4.05477610672067,2.08943262706204,5.98526761856622,4.57508357557907,3.28795476776341,5.27988733383968,4.36910889009705,8.00558328477199,6.82768356106412,6.80673177961221,8.04653415936277,4.62731410949403,15.2648600725658,2.27685187643779,1.76171156811282,2.29363936875137,2.64342657158052,1.68152568894461,1.58030450865046,3.93419540227666,4.71612915298998,6.5792479679843,1.17030546773475,8.47397893247335,7.101717086021,5.84480185223734,0.891283655081389,10.0166008541445,7.97522020501036,4.33286182024025,1.5370958367081,1.56071217071854,1.15106533222573,3.31620021343018,2.02862160014537,5.6348894001583,5.88589821797369,7.31748666634838,1.13309342697566,8.81407135284419,11.3397057009268,8.34964983664359,3.50421955756506,4.55758417699493,4.75226022224187,1.80690142893327,2.8157054453972,1.24930726552346,1.65744076430812,4.92676798152628,4.23374160771938,3.20928234940209,3.91025890483557,0,0.670700859703636,0,0.361439152384566,0,0.144846518960824,0,0,0.472674085820339,0.443458794925128,0.351339142772504,0.261958150995425,0,0,0.649094787309367,0.174129737299267,0.132957960518865,10.7320780937404,17.731842234184,10.7722675385574,0,0,1.04142150482278,0,0.419499436209906,0,0.208994966536811,0.258416759169329,0,0,0.402829317109147,0.760272105718513,0.976248230192678,0.367663080345869,0.81014194788176,0.446498641420399,0,0.112611480483322,3.06633274931766,0,0,0,3.87780264148325,0,0,0.12663051166458,0.132409180813219,0.286836620748814,0,0,0,0.24666754841716,0.311211035399766,0.134710672069688,0,0.605429710579726,0,0.234321431833797,0.312160076830321,0,0.149448680551801,0.23486899728753,0,0.140450806702248,0.204154171254893,0.122834317311768,0.103325781175765,0,0.247266929278557,0.910161361938026,0.718618141816238,0,0.125118519871964,0,0.438977620880838,0.30648779579902,0,0.113432183160021,0.179389635688862,0.640672166455702,0,0.300091096084402,0.103052529238439,0.257640540045629,0.37223371266318,0.168776332241266,0.0974370051611986,0.252433774244115,0.644349290496095,0.969876340912871,0,0,0.169560592310488,0.193260853163297,0.272746120590835,0.286804595389004,0,0.132529768321485,0.116193942869518,0,0,0.72995471815166,0,0.643240938192885,1.38134921352481,0,0,0,0.168584690078102,0,0.220587945464788,0,0.474541238222193,0,0,0,0,0,0,0,0,0,0,1.7658523976586,0.245976877086227,0,0,0,0.201057944823262,0,0,2.07986957055916,0,0.34779121492523,0.117408694235822,0.288732895522148,0,0.380508304469197,2.37061319387782,0,1.23108503043699,0.468008530278475,0.594524649154913,0,0.335964256397719,0.283550194484773,0,0,0.383382679165211,0,0.792435906119034,0.207328115540772,0.144119953416961,0.12624243342638,0.126995788584338,0.381988425558278,0,1.71072446022705,0.102827492703324,0.300343057843917,0.285826432630578,0.336393253036082,0,0.22001485746285,0,3.57656445851882,0,0.26593811658487,0,0.257207374262142,0,0.799266537048298,0,0.542621605391443,0,0,0.355391948742546,0.791951872933429,0.602878754119172,0,0.099972991182057,1.2162378064119,0,0,0.239624855491583,1.14861935834114,1.42636905040718,0.289562613335158,0.410952645100767,0.358121926479791,0.224170287987055,2.75843064282698,4.31255149719035,5.00537841491019,0.508189248444927,0,0,0.502548796003046,0,2.24702107184155,0,0.828831026872071,0,0,0.271265023699736,0,0,0.315404830067869,0.117141414992713,0,0,0,0,0,0.695068915744663,0.783204629850962,1.37257369524342,2.06768026122887,2.5885704098234,1.17400313583789,1.21251028578504,0,0.30239029332968,0,0.306923946576125,0.280660094433074,0,0,0.160853921143607,0,0,0.177561725313127,0.164254312027618,0,0.232420756919918,0.483437798366489,0.200506470303285,0.0920809889358963,0.229628896329213,0.182091168006717,0.262248829918848,0,0.0770153371044148,0,0,0.105551628892876,0,0.170093705276516,0.431831832204279,3.08454505380579,0.541892875087706,0.501689773854853,0.254876273045038,0,0.447749509444357,0.657779629937804,0.784306353074702,0,0,0,0.515205058238611,0.27470839445503,0.082509499920588,0,0,0,0.48335359146061,0.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|phase1_expression=0.181678379270557,0,0,0,1.34088328328186,0,0,0.631719873426831,0.261185628199839,0,0,0.436882744260345,0,0.123766352960047,0,0,0,0.730310090387373,0,0.61560529038394,0.408001382488506,0.940364164434263,0.286235987131057,0.136874425072884,0.125542639594803,0.229240217243854,0.410502947249729,0.314843125254717,1.96682138424452,1.53531759238885,1.39334510984468,0.919421224478927,0.30120591877825,0.739508020333575,0.774672005803016,0.142169232487422,2.93600439334847,0.553995408531877,1.00272223735071,2.17010870715852,0.895661896959697,0.32389366601898,1.03030227053675,1.30858414901608,0,0.242584061187816,0.232429036905685,0.411167888021826,0.309706370895104,0,0,0.236482229888585,0.344745680736619,0.645484683583826,0,0.188242339542605,0.272906150057846,0.898893937780338,0,0.962787081228281,0,1.31940520074686,0,1.27867425159808,0.290209238628584,0,0.622822248995575,0.251248665256743,2.60741459210101,0.868755378820466,0,0.368277635987565,0.949387162322653,2.74631872205524,1.4882300997553,3.35453832813401,3.70684482783434,4.05477610672067,2.08943262706204,5.98526761856622,4.57508357557907,3.28795476776341,5.27988733383968,4.36910889009705,8.00558328477199,6.82768356106412,6.80673177961221,8.04653415936277,4.62731410949403,15.2648600725658,2.27685187643779,1.76171156811282,2.29363936875137,2.64342657158052,1.68152568894461,1.58030450865046,3.93419540227666,4.71612915298998,6.5792479679843,1.17030546773475,8.47397893247335,7.101717086021,5.84480185223734,0.891283655081389,10.0166008541445,7.97522020501036,4.33286182024025,1.5370958367081,1.56071217071854,1.15106533222573,3.31620021343018,2.02862160014537,5.6348894001583,5.88589821797369,7.31748666634838,1.13309342697566,8.81407135284419,11.3397057009268,8.34964983664359,3.50421955756506,4.55758417699493,4.75226022224187,1.80690142893327,2.8157054453972,1.24930726552346,1.65744076430812,4.92676798152628,4.23374160771938,3.20928234940209,3.91025890483557,0,0.670700859703636,0,0.361439152384566,0,0.144846518960824,0,0,0.472674085820339,0.443458794925128,0.351339142772504,0.261958150995425,0,0,0.649094787309367,0.174129737299267,0.132957960518865,10.7320780937404,17.731842234184,10.7722675385574,0,0,1.04142150482278,0,0.419499436209906,0,0.208994966536811,0.258416759169329,0,0,0.402829317109147,0.760272105718513,0.976248230192678,0.367663080345869,0.81014194788176,0.446498641420399,0,0.112611480483322,3.06633274931766,0,0,0,3.87780264148325,0,0,0.12663051166458,0.132409180813219,0.286836620748814,0,0,0,0.24666754841716,0.311211035399766,0.134710672069688,0,0.605429710579726,0,0.234321431833797,0.312160076830321,0,0.149448680551801,0.23486899728753,0,0.140450806702248,0.204154171254893,0.122834317311768,0.103325781175765,0,0.247266929278557,0.910161361938026,0.718618141816238,0,0.125118519871964,0,0.438977620880838,0.30648779579902,0,0.113432183160021,0.179389635688862,0.640672166455702,0,0.300091096084402,0.103052529238439,0.257640540045629,0.37223371266318,0.168776332241266,0.0974370051611986,0.252433774244115,0.644349290496095,0.969876340912871,0,0,0.169560592310488,0.193260853163297,0.272746120590835,0.286804595389004,0,0.132529768321485,0.116193942869518,0,0,0.72995471815166,0,0.643240938192885,1.38134921352481,0,0,0,0.168584690078102,0,0.220587945464788,0,0.474541238222193,0,0,0,0,0,0,0,0,0,0,1.7658523976586,0.245976877086227,0,0,0,0.201057944823262,0,0,2.07986957055916,0,0.34779121492523,0.117408694235822,0.288732895522148,0,0.380508304469197,2.37061319387782,0,1.23108503043699,0.468008530278475,0.594524649154913,0,0.335964256397719,0.283550194484773,0,0,0.383382679165211,0,0.792435906119034,0.207328115540772,0.144119953416961,0.12624243342638,0.126995788584338,0.381988425558278,0,1.71072446022705,0.102827492703324,0.300343057843917,0.285826432630578,0.336393253036082,0,0.22001485746285,0,3.57656445851882,0,0.26593811658487,0,0.257207374262142,0,0.799266537048298,0,0.542621605391443,0,0,0.355391948742546,0.791951872933429,0.602878754119172,0,0.099972991182057,1.2162378064119,0,0,0.239624855491583,1.14861935834114,1.42636905040718,0.289562613335158,0.410952645100767,0.358121926479791,0.224170287987055,2.75843064282698,4.31255149719035,5.00537841491019,0.508189248444927,0,0,0.502548796003046,0,2.24702107184155,0,0.828831026872071,0,0,0.271265023699736,0,0,0.315404830067869,0.117141414992713,0,0,0,0,0,0.695068915744663,0.783204629850962,1.37257369524342,2.06768026122887,2.5885704098234,1.17400313583789,1.21251028578504,0,0.30239029332968,0,0.306923946576125,0.280660094433074,0,0,0.160853921143607,0,0,0.177561725313127,0.164254312027618,0,0.232420756919918,0.483437798366489,0.200506470303285,0.0920809889358963,0.229628896329213,0.182091168006717,0.262248829918848,0,0.0770153371044148,0,0,0.105551628892876,0,0.170093705276516,0.431831832204279,3.08454505380579,0.541892875087706,0.501689773854853,0.254876273045038,0,0.447749509444357,0.657779629937804,0.784306353074702,0,0,0,0.515205058238611,0.27470839445503,0.082509499920588,0,0,0,0.48335359146061,0.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| ||
|short_description=p@chr13:28024374..28024401,+ | |short_description=p@chr13:28024374..28024401,+ | ||
}} | }} |
Latest revision as of 15:20, 24 July 2015
Short description: | p@chr13:28024374..28024401, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:28024374..28024401, + |
Coexpression cluster: | C1704_CD4_Dendritic_CD8_CD19_Natural_Basophils_Eosinophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.82e-34 | 136 |
nongranular leukocyte | 4.83e-31 | 115 |
lymphoid lineage restricted progenitor cell | 5.91e-30 | 52 |
lymphocyte | 3.51e-29 | 53 |
common lymphoid progenitor | 3.51e-29 | 53 |
hematopoietic stem cell | 1.22e-28 | 168 |
hematopoietic cell | 2.99e-28 | 177 |
mature alpha-beta T cell | 1.95e-26 | 18 |
alpha-beta T cell | 1.95e-26 | 18 |
immature T cell | 1.95e-26 | 18 |
mature T cell | 1.95e-26 | 18 |
immature alpha-beta T cell | 1.95e-26 | 18 |
hematopoietic lineage restricted progenitor cell | 3.14e-25 | 120 |
hematopoietic oligopotent progenitor cell | 1.97e-22 | 161 |
hematopoietic multipotent progenitor cell | 1.97e-22 | 161 |
T cell | 1.81e-19 | 25 |
pro-T cell | 1.81e-19 | 25 |
CD8-positive, alpha-beta T cell | 6.06e-18 | 11 |
B cell | 2.83e-17 | 14 |
CD4-positive, alpha-beta T cell | 4.94e-12 | 6 |
intermediate monocyte | 2.29e-11 | 9 |
CD14-positive, CD16-positive monocyte | 2.29e-11 | 9 |
lymphocyte of B lineage | 1.06e-08 | 24 |
pro-B cell | 1.06e-08 | 24 |
mesenchymal cell | 2.35e-07 | 354 |
connective tissue cell | 2.69e-07 | 361 |
plasmacytoid dendritic cell | 3.66e-07 | 3 |
naive T cell | 4.52e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.71e-08 | 98 |
blood island | 2.71e-08 | 98 |
blood | 2.31e-07 | 15 |
haemolymphatic fluid | 2.31e-07 | 15 |
organism substance | 2.31e-07 | 15 |
connective tissue | 4.99e-07 | 371 |
hemolymphoid system | 7.74e-07 | 108 |