FFCP PHASE1:Hg19::chr17:17494972..17495037,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10400 | |EntrezGene=10400 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8830 | |HGNC=8830 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UBM1,A8MZ66,D3YTC7 | |UniProt=Q9UBM1,A8MZ66,D3YTC7 | ||
|association_with_transcript=0bp_to_ENST00000255389,ENST00000395781,ENST00000435340,ENST00000461404,ENST00000472446,NM_148172,uc002grl.2,uc010vwx.1_5end | |association_with_transcript=0bp_to_ENST00000255389,ENST00000395781,ENST00000435340,ENST00000461404,ENST00000472446,NM_148172,uc002grl.2,uc010vwx.1_5end | ||
|cluster_id=chr17:17494972..17495037,- | |||
|coexpression_cluster_id=C3610 | |||
|description=CAGE_peak_1_at_PEMT_5end | |description=CAGE_peak_1_at_PEMT_5end | ||
|id=chr17:17494972..17495037,- | |id=chr17:17494972..17495037,- | ||
|ontology_enrichment_celltype=CL:0000055!2.35e-17!180;CL:0000066!3.24e-17!254;CL:0002321!2.75e-14!248;CL:0000220!1.01e-13!246;CL:0000548!6.83e-12!679;CL:0000004!6.83e-12!679;CL:0000255!6.83e-12!679;CL:0000012!1.90e-11!682;CL:0000183!1.67e-08!59;CL:0000325!4.30e-08!39;CL:0000222!1.16e-07!119;CL:0000393!1.18e-07!60;CL:0000211!1.18e-07!60;CL:1000449!3.43e-07!16;CL:0000680!5.65e-07!57;CL:0000056!5.65e-07!57;CL:0000355!5.65e-07!57 | |ontology_enrichment_celltype=CL:0000055!2.35e-17!180;CL:0000066!3.24e-17!254;CL:0002321!2.75e-14!248;CL:0000220!1.01e-13!246;CL:0000548!6.83e-12!679;CL:0000004!6.83e-12!679;CL:0000255!6.83e-12!679;CL:0000012!1.90e-11!682;CL:0000183!1.67e-08!59;CL:0000325!4.30e-08!39;CL:0000222!1.16e-07!119;CL:0000393!1.18e-07!60;CL:0000211!1.18e-07!60;CL:1000449!3.43e-07!16;CL:0000680!5.65e-07!57;CL:0000056!5.65e-07!57;CL:0000355!5.65e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:1000449;1.48e-07;15!CL:1000497;9.62e-07;17!CL:0002518;9.62e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.03e-17,253;CL:0002321,1.90e-14,250;CL:0000222,8.83e-08,121;CL:0000393,1.42e-07,61;CL:0000211,1.42e-07,61;CL:1000449,1.55e-07,15;CL:0000680,6.75e-07,58;CL:0000056,6.75e-07,58;CL:0000355,6.75e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!9.42e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,9.42e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0003104!3.50e-13!238;UBERON:0009142!3.50e-13!238;UBERON:0002100!3.82e-12!216;UBERON:0009569!1.29e-10!113;UBERON:0000464!3.16e-09!104;UBERON:0000481!4.48e-09!347;UBERON:0008947!8.01e-09!38;UBERON:0003258!8.01e-09!38;UBERON:0000475!8.73e-09!365;UBERON:0000466!3.00e-08!126;UBERON:0000072!5.78e-08!46;UBERON:0004290!1.75e-07!70;UBERON:0000063!2.00e-07!97;UBERON:0005256!2.24e-07!143;UBERON:0001048!3.42e-07!168;UBERON:0004211!3.43e-07!16;UBERON:0001285!3.43e-07!16;UBERON:0007684!3.43e-07!16;UBERON:0003220!3.43e-07!16;UBERON:0004208!3.43e-07!16;UBERON:0005177!3.45e-07!107;UBERON:0000486!3.67e-07!82;UBERON:0000119!7.26e-07!312;UBERON:0001737!8.65e-07!9;UBERON:0000915!9.80e-07!52;UBERON:0000065!9.98e-07!53 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;5.78e-09;37!UBERON:0006554;3.17e-08;30!UBERON:0001008;3.17e-08;30!UBERON:0006555;1.48e-07;15!UBERON:0004819;1.48e-07;15!UBERON:0001285;1.48e-07;15!UBERON:0007684;1.48e-07;15!UBERON:0002113;3.14e-07;24!UBERON:0011143;3.14e-07;24!UBERON:0001737;8.72e-07;9!UBERON:0001557;8.72e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.48e-13,199;UBERON:0009569,1.06e-10,112;UBERON:0007503,2.30e-09,78;UBERON:0003104,7.45e-09,160;UBERON:0009142,7.45e-09,160;UBERON:0008947,8.01e-09,38;UBERON:0003258,8.01e-09,38;UBERON:0000072,7.55e-08,47;UBERON:0005177,1.11e-07,101;UBERON:0004211,1.55e-07,15;UBERON:0009773,1.55e-07,15;UBERON:0001231,1.55e-07,15;UBERON:0001285,1.55e-07,15;UBERON:0007684,1.55e-07,15;UBERON:0004208,1.55e-07,15;UBERON:0002329,2.03e-07,71;UBERON:0003059,2.03e-07,71;UBERON:0007282,2.03e-07,71;UBERON:0004290,2.03e-07,71;UBERON:0009618,2.03e-07,71;UBERON:0007524,3.87e-07,73;UBERON:0003077,4.01e-07,72;UBERON:0007285,4.01e-07,72;UBERON:0000486,4.14e-07,83;UBERON:0006555,5.81e-07,16;UBERON:0004819,5.81e-07,16;UBERON:0000119,8.13e-07,309;UBERON:0001737,8.65e-07,9;UBERON:0000915,9.18e-07,52;UBERON:0001048,9.53e-07,160 | |||
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| ||
|short_description=p1@PEMT | |short_description=p1@PEMT | ||
}} | }} |
Latest revision as of 21:48, 18 September 2015
Short description: | p1@PEMT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PEMT_5end |
Coexpression cluster: | C3610_osteosarcoma_Mesenchymal_Renal_thyroid_Adipocyte_Fibroblast_Melanocyte |
Association with transcript: | 0bp_to_ENST00000255389, ENST00000395781, ENST00000435340, ENST00000461404, ENST00000472446, NM_148172, uc002grl.2, uc010vwx.1_5end |
EntrezGene: | PEMT |
HGNC: | 8830 |
UniProt: | Q9UBM1A8MZ66D3YTC7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.03e-17 | 253 |
embryonic cell | 1.90e-14 | 250 |
mesodermal cell | 8.83e-08 | 121 |
electrically responsive cell | 1.42e-07 | 61 |
electrically active cell | 1.42e-07 | 61 |
epithelial cell of nephron | 1.55e-07 | 15 |
muscle precursor cell | 6.75e-07 | 58 |
myoblast | 6.75e-07 | 58 |
multi-potent skeletal muscle stem cell | 6.75e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
trunk | 1.48e-13 | 199 |
subdivision of trunk | 1.06e-10 | 112 |
epithelial vesicle | 2.30e-09 | 78 |
mesenchyme | 7.45e-09 | 160 |
entire embryonic mesenchyme | 7.45e-09 | 160 |
respiratory primordium | 8.01e-09 | 38 |
endoderm of foregut | 8.01e-09 | 38 |
segment of respiratory tract | 7.55e-08 | 47 |
trunk region element | 1.11e-07 | 101 |
nephron epithelium | 1.55e-07 | 15 |
renal tubule | 1.55e-07 | 15 |
nephron tubule | 1.55e-07 | 15 |
nephron | 1.55e-07 | 15 |
uriniferous tubule | 1.55e-07 | 15 |
nephrogenic mesenchyme | 1.55e-07 | 15 |
somite | 2.03e-07 | 71 |
presomitic mesoderm | 2.03e-07 | 71 |
presumptive segmental plate | 2.03e-07 | 71 |
dermomyotome | 2.03e-07 | 71 |
trunk paraxial mesoderm | 2.03e-07 | 71 |
dense mesenchyme tissue | 3.87e-07 | 73 |
paraxial mesoderm | 4.01e-07 | 72 |
presumptive paraxial mesoderm | 4.01e-07 | 72 |
multilaminar epithelium | 4.14e-07 | 83 |
excretory tube | 5.81e-07 | 16 |
kidney epithelium | 5.81e-07 | 16 |
cell layer | 8.13e-07 | 309 |
larynx | 8.65e-07 | 9 |
thoracic segment of trunk | 9.18e-07 | 52 |
primordium | 9.53e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 9.42e-07 | 143 |