FFCP PHASE1:Mm9::chrX:140367756..140367767,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=13193 | |EntrezGene=13193 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q9CXL6,O88809,Q6E5A4,Q6PGI2 | |UniProt=Q9CXL6,O88809,Q6E5A4,Q6PGI2 | ||
|association_with_transcript=0bp_to_ENSMUST00000112856,ENSMUST00000166991,NM_001110223,NM_001110224,NM_010025,uc009umm.1,uc009umn.1_5end | |association_with_transcript=0bp_to_ENSMUST00000112856,ENSMUST00000166991,NM_001110223,NM_001110224,NM_010025,uc009umm.1,uc009umn.1_5end | ||
|cluster_id=chrX:140367756..140367767,- | |||
|description=CAGE_peak_4_at_Dcx_5end | |description=CAGE_peak_4_at_Dcx_5end | ||
|id=chrX:140367756..140367767,- | |id=chrX:140367756..140367767,- | ||
|ontology_enrichment_celltype=CL:0000117!6.00e-14!23;CL:0000337!6.00e-14!23;CL:0000540!2.66e-08!33;CL:0000047!2.66e-08!33;CL:0000031!2.66e-08!33;CL:0000404!2.66e-08!33;CL:0002609!1.49e-07!6 | |ontology_enrichment_celltype=CL:0000117!6.00e-14!23;CL:0000337!6.00e-14!23;CL:0000540!2.66e-08!33;CL:0000047!2.66e-08!33;CL:0000031!2.66e-08!33;CL:0000404!2.66e-08!33;CL:0002609!1.49e-07!6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.17e-23,23;CL:0000337,7.17e-23,23;CL:0002609,1.07e-16,6;CL:0000540,7.55e-15,33;CL:0000047,7.55e-15,33;CL:0000031,7.55e-15,33;CL:0000404,7.55e-15,33;CL:0000393,5.10e-12,39;CL:0000211,5.10e-12,39;CL:0002319,1.42e-10,43;CL:0000221,2.95e-10,44;CL:0000133,2.95e-10,44;CL:0002608,2.80e-09,3;CL:0002612,1.24e-08,3;CL:0000120,2.93e-08,3;CL:0002613,6.77e-08,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!4.80e-13!34;UBERON:0001049!6.53e-12!52;UBERON:0005068!6.53e-12!52;UBERON:0006241!6.53e-12!52;UBERON:0007135!6.53e-12!52;UBERON:0002780!6.16e-11!39;UBERON:0001890!6.16e-11!39;UBERON:0006240!6.16e-11!39;UBERON:0003056!1.85e-10!49;UBERON:0003080!1.98e-10!40;UBERON:0002346!3.04e-10!71;UBERON:0003075!3.04e-10!71;UBERON:0007284!3.04e-10!71;UBERON:0001017!1.24e-09!73;UBERON:0005743!1.24e-09!73;UBERON:0002791!1.74e-09!29;UBERON:0003528!1.74e-09!29;UBERON:0001893!1.74e-09!29;UBERON:0000955!2.11e-09!50;UBERON:0006238!2.11e-09!50;UBERON:0000073!4.87e-09!75;UBERON:0001016!4.87e-09!75;UBERON:0002616!9.22e-09!49;UBERON:0000033!2.29e-08!63;UBERON:0000956!3.97e-07!21;UBERON:0001869!3.97e-07!21;UBERON:0000203!3.97e-07!21 | |ontology_enrichment_uberon=UBERON:0002020!4.80e-13!34;UBERON:0001049!6.53e-12!52;UBERON:0005068!6.53e-12!52;UBERON:0006241!6.53e-12!52;UBERON:0007135!6.53e-12!52;UBERON:0002780!6.16e-11!39;UBERON:0001890!6.16e-11!39;UBERON:0006240!6.16e-11!39;UBERON:0003056!1.85e-10!49;UBERON:0003080!1.98e-10!40;UBERON:0002346!3.04e-10!71;UBERON:0003075!3.04e-10!71;UBERON:0007284!3.04e-10!71;UBERON:0001017!1.24e-09!73;UBERON:0005743!1.24e-09!73;UBERON:0002791!1.74e-09!29;UBERON:0003528!1.74e-09!29;UBERON:0001893!1.74e-09!29;UBERON:0000955!2.11e-09!50;UBERON:0006238!2.11e-09!50;UBERON:0000073!4.87e-09!75;UBERON:0001016!4.87e-09!75;UBERON:0002616!9.22e-09!49;UBERON:0000033!2.29e-08!63;UBERON:0000956!3.97e-07!21;UBERON:0001869!3.97e-07!21;UBERON:0000203!3.97e-07!21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.45e-14,34;UBERON:0003528,9.58e-11,29;UBERON:0002791,9.58e-11,29;UBERON:0001893,9.58e-11,29;UBERON:0001017,1.04e-08,73;UBERON:0002257,1.24e-08,3;UBERON:0001016,2.31e-08,75;UBERON:0000369,2.51e-08,5;UBERON:0002435,2.51e-08,5;UBERON:0000204,2.51e-08,5;UBERON:0010082,2.51e-08,5;UBERON:0001049,3.59e-08,52;UBERON:0005068,3.59e-08,52;UBERON:0006241,3.59e-08,52;UBERON:0007135,3.59e-08,52;UBERON:0000073,9.62e-08,54;UBERON:0002780,2.54e-07,39;UBERON:0001890,2.54e-07,39;UBERON:0006240,2.54e-07,39;UBERON:0003080,4.48e-07,40;UBERON:0000956,4.78e-07,21;UBERON:0001869,4.78e-07,21;UBERON:0000203,4.78e-07,21;UBERON:0000955,9.37e-07,47;UBERON:0006238,9.37e-07,47 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61853168687678,3.70293685490423,2.53532561402472,0,0,0,0,0,0,0,8.08778976006126,4.18518408828241,4.20649922702764,0.856952953211411,0.662605622854841,11.0241719293459,10.0637744569148,5.51531271966013,0,0.255374676170375,0,1.18697658957174,2.19570344645783,2.08365348222704,0.279182999001381,0,0.15279824777681,3.24091444021034,3.70166370077668,3.54158947068071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0.150722640552623,0.117588707135705,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0,0,7.413606774659,0.173824320192276,0,0,0.811206315338788,0.101839363850316,0,0,0,0.130120442962704,0,0.180062129805349,0.150704817835715,0.0680364991513279,0.12811372028485,0.187403449119458,0,0.215567992932842,0.189106080167819,0.175951124163949,1.09597866213787,0.278047249225598,0,0.205782136407943,0.199034266818493,0,0,0,0,0.234526059981096,0,0,0,0.154267112887378,0,0.268273401399619,0,0,0,0,0,0,0,0.420579897128254,6.5858951922742,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0.198956472041151,0,0,0,0,0.189667900953082,0.228497025219458,0,0.203651327845314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.757965647081939,0.651859905768103,0.169745085775188,0,0,0,0,0,0.221464689648775,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0,0,0,0,0.283076530788832,0,0,0,2.57057053137446,0,0,0,0,0,0.242780636154981,0.302323556964751,0,0,0.307435147943927,0,0.363533729477506,0.712994756769443,0.316036757935816,0,0,0,0.36012218806262,0.129358683782755,0.857348140126369,0.532020700926821,0.356737635204141,0.329098041204242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.474503990371703,0,0.324016022465404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460325236507177,0,0.68741272937475,0.685082519770642,0.755393897389701,0,0.45032120322422,0,1.03552062350364,2.07574695168353,0.798049746802062,2.73173769206615,0.972426868273176,1.25767897576789,1.10306105070008,0,0.618105171716683,0.962757628775446,0.505394423527595,0.50695859978048,0.754505365544305,0.842773567228942,1.28050304809739,1.09127391015665,0.476293691283074,0.811190281613988,1.73618298417335,0.412085900803307,1.61918812147837,1.37147700954166,0.70990322463735,1.66905332963125,0.581385666529314,0.846984423737976,1.18460451048347,1.09756783723664,0.789209134313529,0.950628796921032,0.561142271657738,1.30498519936592,1.0835493061312,2.04615521584845,1.08455788830176,0.578719832943424,3.2475375131933,0.935726433781634,0.859484216193193,0.382576664137687,0,0.231867835620421 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61853168687678,3.70293685490423,2.53532561402472,0,0,0,0,0,0,0,8.08778976006126,4.18518408828241,4.20649922702764,0.856952953211411,0.662605622854841,11.0241719293459,10.0637744569148,5.51531271966013,0,0.255374676170375,0,1.18697658957174,2.19570344645783,2.08365348222704,0.279182999001381,0,0.15279824777681,3.24091444021034,3.70166370077668,3.54158947068071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0.150722640552623,0.117588707135705,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0,0,7.413606774659,0.173824320192276,0,0,0.811206315338788,0.101839363850316,0,0,0,0.130120442962704,0,0.180062129805349,0.150704817835715,0.0680364991513279,0.12811372028485,0.187403449119458,0,0.215567992932842,0.189106080167819,0.175951124163949,1.09597866213787,0.278047249225598,0,0.205782136407943,0.199034266818493,0,0,0,0,0.234526059981096,0,0,0,0.154267112887378,0,0.268273401399619,0,0,0,0,0,0,0,0.420579897128254,6.5858951922742,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0.198956472041151,0,0,0,0,0.189667900953082,0.228497025219458,0,0.203651327845314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.757965647081939,0.651859905768103,0.169745085775188,0,0,0,0,0,0.221464689648775,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0,0,0,0,0.283076530788832,0,0,0,2.57057053137446,0,0,0,0,0,0.242780636154981,0.302323556964751,0,0,0.307435147943927,0,0.363533729477506,0.712994756769443,0.316036757935816,0,0,0,0.36012218806262,0.129358683782755,0.857348140126369,0.532020700926821,0.356737635204141,0.329098041204242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.474503990371703,0,0.324016022465404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460325236507177,0,0.68741272937475,0.685082519770642,0.755393897389701,0,0.45032120322422,0,1.03552062350364,2.07574695168353,0.798049746802062,2.73173769206615,0.972426868273176,1.25767897576789,1.10306105070008,0,0.618105171716683,0.962757628775446,0.505394423527595,0.50695859978048,0.754505365544305,0.842773567228942,1.28050304809739,1.09127391015665,0.476293691283074,0.811190281613988,1.73618298417335,0.412085900803307,1.61918812147837,1.37147700954166,0.70990322463735,1.66905332963125,0.581385666529314,0.846984423737976,1.18460451048347,1.09756783723664,0.789209134313529,0.950628796921032,0.561142271657738,1.30498519936592,1.0835493061312,2.04615521584845,1.08455788830176,0.578719832943424,3.2475375131933,0.935726433781634,0.859484216193193,0.382576664137687,0,0.231867835620421 | ||
|short_description=p4@Dcx | |short_description=p4@Dcx | ||
}} | }} |
Latest revision as of 16:09, 1 October 2015
Short description: | p4@Dcx |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Dcx_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000112856, ENSMUST00000166991, NM_001110223, NM_001110224, NM_010025, uc009umm.1, uc009umn.1_5end |
EntrezGene: | Dcx |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.17e-23 | 23 |
neuroblast (sensu Vertebrata) | 7.17e-23 | 23 |
neuron of cerebral cortex | 1.07e-16 | 6 |
neuron | 7.55e-15 | 33 |
neuronal stem cell | 7.55e-15 | 33 |
neuroblast | 7.55e-15 | 33 |
electrically signaling cell | 7.55e-15 | 33 |
electrically responsive cell | 5.10e-12 | 39 |
electrically active cell | 5.10e-12 | 39 |
neural cell | 1.42e-10 | 43 |
ectodermal cell | 2.95e-10 | 44 |
neurectodermal cell | 2.95e-10 | 44 |
hippocampal neuron | 2.80e-09 | 3 |
neuron of the ventral spinal cord | 1.24e-08 | 3 |
granule cell | 2.93e-08 | 3 |
striatum neuron | 6.77e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
gray matter | 2.45e-14 | 34 |
brain grey matter | 9.58e-11 | 29 |
regional part of telencephalon | 9.58e-11 | 29 |
telencephalon | 9.58e-11 | 29 |
central nervous system | 1.04e-08 | 73 |
ventral horn of spinal cord | 1.24e-08 | 3 |
nervous system | 2.31e-08 | 75 |
corpus striatum | 2.51e-08 | 5 |
striatum | 2.51e-08 | 5 |
ventral part of telencephalon | 2.51e-08 | 5 |
future corpus striatum | 2.51e-08 | 5 |
neural tube | 3.59e-08 | 52 |
neural rod | 3.59e-08 | 52 |
future spinal cord | 3.59e-08 | 52 |
neural keel | 3.59e-08 | 52 |
regional part of nervous system | 9.62e-08 | 54 |
regional part of forebrain | 2.54e-07 | 39 |
forebrain | 2.54e-07 | 39 |
future forebrain | 2.54e-07 | 39 |
anterior neural tube | 4.48e-07 | 40 |
cerebral cortex | 4.78e-07 | 21 |
cerebral hemisphere | 4.78e-07 | 21 |
pallium | 4.78e-07 | 21 |
brain | 9.37e-07 | 47 |
future brain | 9.37e-07 | 47 |