FFCP PHASE1:Hg19::chr12:51442103..51442127,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25875 | |EntrezGene=25875 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24241 | |HGNC=24241 | ||
|TSSclassifier=strong | |||
|UniProt=F8W6J0,B3KXK7,B7Z7E4,F8W1Z2,F8VR35,F8VR33,F8VPY5,F8W0R0,F8VQE7,F8VVQ3,F8W1U1,F8VTR1,F8VS60,F8VXQ4 | |UniProt=F8W6J0,B3KXK7,B7Z7E4,F8W1Z2,F8VR35,F8VR33,F8VPY5,F8W0R0,F8VQE7,F8VVQ3,F8W1U1,F8VTR1,F8VS60,F8VXQ4 | ||
|association_with_transcript=0bp_to_ENST00000380123,ENST00000380135,ENST00000418425,ENST00000448283,ENST00000546992,ENST00000547008,ENST00000547555,ENST00000547660,ENST00000547877,ENST00000548209,ENST00000548251,ENST00000548390,ENST00000548401,ENST00000549340,ENST00000549686,ENST00000550100,ENST00000550442,ENST00000550715,ENST00000550814,ENST00000551261_5end | |association_with_transcript=0bp_to_ENST00000380123,ENST00000380135,ENST00000418425,ENST00000448283,ENST00000546992,ENST00000547008,ENST00000547555,ENST00000547660,ENST00000547877,ENST00000548209,ENST00000548251,ENST00000548390,ENST00000548401,ENST00000549340,ENST00000549686,ENST00000550100,ENST00000550442,ENST00000550715,ENST00000550814,ENST00000551261_5end | ||
|cluster_id=chr12:51442103..51442127,+ | |||
|description=CAGE_peak_1_at_LETMD1_5end | |description=CAGE_peak_1_at_LETMD1_5end | ||
|id=chr12:51442103..51442127,+ | |id=chr12:51442103..51442127,+ | ||
|ontology_enrichment_celltype=CL:0000838!2.05e-07!52;CL:0000542!4.86e-07!53;CL:0000051!4.86e-07!53;CL:0000791!7.63e-07!18;CL:0000789!7.63e-07!18;CL:0002420!7.63e-07!18;CL:0002419!7.63e-07!18;CL:0000790!7.63e-07!18 | |ontology_enrichment_celltype=CL:0000838!2.05e-07!52;CL:0000542!4.86e-07!53;CL:0000051!4.86e-07!53;CL:0000791!7.63e-07!18;CL:0000789!7.63e-07!18;CL:0002420!7.63e-07!18;CL:0002419!7.63e-07!18;CL:0000790!7.63e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0000791;7.71e-07;18!CL:0000789;7.71e-07;18!CL:0002419;7.71e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,2.05e-07,52;CL:0000542,4.86e-07,53;CL:0000051,4.86e-07,53;CL:0000791,7.63e-07,18;CL:0000789,7.63e-07,18;CL:0002420,7.63e-07,18;CL:0002419,7.63e-07,18;CL:0000790,7.63e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000790;7.71e-07;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.42e-08!115;UBERON:0001950!4.89e-07!20;UBERON:0002619!6.34e-07!22;UBERON:0001049!8.03e-07!57;UBERON:0005068!8.03e-07!57;UBERON:0006241!8.03e-07!57;UBERON:0007135!8.03e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;4.81e-07;20!UBERON:0002619;6.12e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.27e-08,114;UBERON:0001950,4.89e-07,20;UBERON:0002619,6.34e-07,22;UBERON:0000073,6.81e-07,53;UBERON:0002616,6.81e-07,53;UBERON:0001049,7.32e-07,56;UBERON:0005068,7.32e-07,56;UBERON:0006241,7.32e-07,56;UBERON:0007135,7.32e-07,56 | |||
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|short_description=p1@LETMD1 | |short_description=p1@LETMD1 | ||
}} | }} |
Latest revision as of 19:28, 18 September 2015
Short description: | p1@LETMD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LETMD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000380123, ENST00000380135, ENST00000418425, ENST00000448283, ENST00000546992, ENST00000547008, ENST00000547555, ENST00000547660, ENST00000547877, ENST00000548209, ENST00000548251, ENST00000548390, ENST00000548401, ENST00000549340, ENST00000549686, ENST00000550100, ENST00000550442, ENST00000550715, ENST00000550814, ENST00000551261_5end |
EntrezGene: | LETMD1 |
HGNC: | 24241 |
UniProt: | F8W6J0B3KXK7B7Z7E4F8W1Z2F8VR35F8VR33F8VPY5F8W0R0F8VQE7F8VVQ3F8W1U1F8VTR1F8VS60F8VXQ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 2.05e-07 | 52 |
lymphocyte | 4.86e-07 | 53 |
common lymphoid progenitor | 4.86e-07 | 53 |
mature alpha-beta T cell | 7.63e-07 | 18 |
alpha-beta T cell | 7.63e-07 | 18 |
immature T cell | 7.63e-07 | 18 |
mature T cell | 7.63e-07 | 18 |
immature alpha-beta T cell | 7.63e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.27e-08 | 114 |
neocortex | 4.89e-07 | 20 |
regional part of cerebral cortex | 6.34e-07 | 22 |
regional part of nervous system | 6.81e-07 | 53 |
regional part of brain | 6.81e-07 | 53 |
neural tube | 7.32e-07 | 56 |
neural rod | 7.32e-07 | 56 |
future spinal cord | 7.32e-07 | 56 |
neural keel | 7.32e-07 | 56 |