FFCP PHASE1:Hg19::chr10:95242133..95242144,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:95242133..95242144,-
|short_description=p7@MYOF
|description=CAGE_peak_7_at_MYOF_5end
|association_with_transcript=-59bp_to_ENST00000371489,ENST0000037150...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=26509 | |EntrezGene=26509 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3656 | |HGNC=3656 | ||
|UniProt=F8W8J4, | |TSSclassifier=strong | ||
|UniProt=F8W8J4,C9JCN0,Q9NZM1 | |||
|association_with_transcript=-59bp_to_ENST00000371489,ENST00000371501,ENST00000371502,NM_013451,NM_133337,uc001kin.2,uc001kio.2,uc001kip.3,uc009xuf.2_5end | |||
|cluster_id=chr10:95242133..95242144,- | |||
|description=CAGE_peak_7_at_MYOF_5end | |||
|id=chr10:95242133..95242144,- | |||
|ontology_enrichment_celltype=CL:0000548!2.24e-16!679;CL:0000004!2.24e-16!679;CL:0000255!2.24e-16!679;CL:0000012!1.91e-15!682;CL:0002057!3.63e-14!42;CL:0002371!1.12e-13!591;CL:0000144!5.56e-13!625;CL:0002194!1.32e-12!63;CL:0000576!1.32e-12!63;CL:0000040!1.32e-12!63;CL:0000559!1.32e-12!63;CL:0000860!1.33e-12!45;CL:0002009!1.38e-12!65;CL:0000055!2.76e-11!180;CL:0000222!6.54e-10!119;CL:0000057!1.09e-09!75;CL:0000557!2.43e-09!71;CL:0002139!4.16e-09!24;CL:0000063!7.48e-09!578;CL:0000839!8.41e-09!70;CL:0000076!1.19e-08!62;CL:0002620!3.27e-08!23;CL:0000071!3.49e-08!18;CL:0002546!3.49e-08!18;CL:0000220!3.80e-08!246;CL:0002321!1.15e-07!248;CL:0000003!1.24e-07!722;CL:0000213!1.40e-07!57;CL:0000215!1.40e-07!57;CL:0000766!2.82e-07!76 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.84e-13;33!CL:0002057;5.84e-13;33!CL:0000473;4.42e-12;39!CL:0000234;4.42e-12;39!CL:0002139;1.58e-10;24!CL:0000071;3.55e-09;18!CL:0002620;2.29e-08;23!CL:0000576;3.88e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,4.74e-16,48;CL:0000234,4.74e-16,48;CL:0000860,1.30e-14,42;CL:0002057,1.30e-14,42;CL:0002194,1.14e-13,59;CL:0000576,1.14e-13,59;CL:0000040,1.14e-13,59;CL:0000559,1.14e-13,59;CL:0002009,2.65e-13,61;CL:0002139,8.57e-11,24;CL:0000557,1.71e-10,67;CL:0000839,2.54e-10,66;CL:0000057,3.44e-10,76;CL:0000222,8.90e-10,121;CL:0000071,2.19e-09,18;CL:0002546,2.19e-09,18;CL:0000076,5.82e-09,63;CL:0000213,1.43e-08,58;CL:0000215,1.43e-08,58;CL:0002620,1.88e-08,23;CL:0000766,1.95e-08,72;CL:0002321,1.05e-07,250;CL:0000723,7.62e-07,433;CL:0000048,8.26e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;8.44e-11;42!CL:0002546;3.55e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!8.83e-15!448;UBERON:0004120!8.83e-15!448;UBERON:0006603!8.83e-15!448;UBERON:0000468!2.97e-14!659;UBERON:0000467!6.37e-14!625;UBERON:0000480!1.21e-13!626;UBERON:0002204!6.74e-12!167;UBERON:0003081!4.73e-11!216;UBERON:0002049!4.82e-11!79;UBERON:0007798!4.82e-11!79;UBERON:0004765!1.62e-09!101;UBERON:0001434!1.62e-09!101;UBERON:0001981!2.63e-09!60;UBERON:0007500!2.63e-09!60;UBERON:0004537!2.63e-09!60;UBERON:0006965!2.63e-09!60;UBERON:0000055!2.94e-09!69;UBERON:0002371!2.05e-08!80;UBERON:0001474!3.36e-08!86;UBERON:0001986!3.49e-08!18;UBERON:0004638!3.49e-08!18;UBERON:0004852!3.49e-08!18;UBERON:0001637!5.39e-08!42;UBERON:0003509!5.39e-08!42;UBERON:0004572!5.39e-08!42;UBERON:0002050!7.53e-08!605;UBERON:0005423!7.53e-08!605;UBERON:0000923!7.74e-08!604;UBERON:0005291!7.74e-08!604;UBERON:0006598!7.74e-08!604;UBERON:0002532!7.74e-08!604;UBERON:0000487!3.03e-07!22;UBERON:0002097!3.29e-07!40;UBERON:0004872!3.74e-07!84;UBERON:0000922!4.43e-07!612;UBERON:0000062!5.72e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;3.55e-09;18!UBERON:0001986;3.55e-09;18!UBERON:0004852;3.55e-09;18!UBERON:0000487;1.48e-07;22!UBERON:0006914;5.49e-07;25!UBERON:0001637;9.84e-07;42!UBERON:0003509;9.84e-07;42!UBERON:0004572;9.84e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,6.00e-14,315;UBERON:0004120,6.00e-14,315;UBERON:0006603,6.00e-14,315;UBERON:0002204,6.65e-12,167;UBERON:0003081,6.82e-12,203;UBERON:0001434,2.08e-10,100;UBERON:0002049,4.76e-10,78;UBERON:0007798,4.76e-10,78;UBERON:0002371,6.82e-10,76;UBERON:0004638,2.19e-09,18;UBERON:0001986,2.19e-09,18;UBERON:0004852,2.19e-09,18;UBERON:0001474,2.50e-09,82;UBERON:0004765,2.73e-09,90;UBERON:0000055,8.90e-09,68;UBERON:0007500,1.71e-08,59;UBERON:0001981,1.71e-08,59;UBERON:0004537,1.71e-08,59;UBERON:0006965,1.71e-08,59;UBERON:0001637,2.98e-08,42;UBERON:0003509,2.98e-08,42;UBERON:0004572,2.98e-08,42;UBERON:0002405,3.42e-08,93;UBERON:0000487,9.88e-08,22;UBERON:0006914,4.44e-07,25;UBERON:0000490,6.69e-07,148 | |||
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|phase1_expression=5.08699461957559,2.35510576280081,4.79244973926302,3.00219895059391,2.68176656656373,0.872338524100369,2.53299878168311,0.631719873426831,0,0.245733936501509,0.697801167972428,1.09220686065086,0.791300934685361,0.990130823680373,1.98838425436749,0,3.01347264011988,2.92124036154949,0.975865597581014,0.984968464614303,2.04000691244253,0.313454721478088,1.71741592278634,2.6006140763848,2.63639543149086,0,0,0,0.786728553697808,0.767658796194425,1.08371286321253,3.67768489791571,1.204823675113,1.47901604066715,0,0,0,0.553995408531877,0.601633342410425,0.434021741431704,0,0,0,1.59938062657521,2.64513160582167,1.4555043671269,2.78914844286822,8.63452564845834,5.88442104700697,15.8230815777183,20.2366958157989,15.371344942758,5.5159308917859,4.51839278508678,4.06279459783025,0.564727018627814,1.09162460023138,2.69668181334102,3.06083892370903,3.85114832491312,5.75403413219137,17.1522676097092,20.9436840502713,8.95071976118658,2.90209238628584,3.40431134814684,4.35975574296902,15.3261685806613,20.3378338183879,12.5969529928968,3.02699751316684,4.78760926783834,3.79754864929061,3.59133986730301,3.61427309940574,2.51590374610051,0.786300418025466,0.450530678524519,1.12507910687956,3.70516566863623,4.77400025277816,3.10529061399878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.222820913770347,0,0,0,0.128091319725675,0.260118695119756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0.255725123687061,3.61439152384566,2.00535164254356,0.724232594804119,3.1811437882044,1.45990461090791,2.74150969775797,2.21729397462564,1.66886092816939,0.916853528483988,0,0.741568885568859,5.8418530857843,6.09454080547435,4.91944453919801,0.476981248610684,0.571994910780128,0.371457501329565,2.38514888840046,2.58070378531837,5.55424802572151,6.78369530308812,7.97048928798821,2.47606237746061,3.34391946458897,5.94358546089456,6.75955899104749,5.02080919147005,3.22263453687318,4.56163263431108,2.4406205754817,5.14728312484216,2.43042584364528,5.89378206674926,3.81699933464489,4.16662477788292,1.53316637465883,2.84779697870439,1.46561395144326,0,0,0.436094052142534,4.47274756525787,2.15271869829786,8.73900593367244,6.88407889797153,2.4826786753885,2.24271040056923,0,1.72667283892012,1.55605517699883,1.0776853765575,0.817309515567294,0.302714855289863,1.72852777344,0.70296429550139,3.1216007683032,1.1409436430889,0.747243402759005,1.996386476944,2.26622122115384,1.26405726032024,1.63323337003915,0.368502951935304,0.826606249406124,2.37600571456411,1.23633464639278,0.910161361938026,0,3.19838616512726,1.37630371859161,2.49357703935765,3.95079858792754,3.67785354958824,2.10333282469236,1.92834711372036,11.660326319776,1.70845911054854,4.02670612203168,9.00273288253207,3.60683852334536,9.79034052173391,5.3973888336161,8.77636927654584,5.06672426838233,13.3789900349381,3.86609574297657,0.323292113637624,19.8805371809304,7.05264687593482,3.89989362314122,2.31913023795956,1.36373060295417,4.30206893083506,0,0,0,0.207322110030741,0,0,3.12899064659632,2.57296375277154,6.90674606762403,0.928735856063958,0.721879481669586,0.709840800239063,0.505754070234305,0.482022059766964,0.441175890929576,0.653638332277218,0.237270619111097,1.07865046528132,0.196221465125346,1.15424147083917,0.738155454624648,0,0.4115740113314,1.47008711385542,0,0,0.590789906681404,0,0.368965315629341,2.91665277507493,3.51200913307602,2.24803506515239,0.603173834469785,1.20364978706088,0.325808305310325,0,4.3299402607582,0.927443239800615,1.99594780200897,2.30986316417718,0,1.71228737011138,0.790204397959275,0,0.738651018262192,7.95614501473408,2.67536092119711,2.81201501960331,2.85569617938061,0.992425680696705,1.25381931783988,0.871901815541886,0.766765358330422,0,0,0.207328115540772,0,0,0.507983154337352,0.381988425558278,0,0,3.496134751913,1.50171528921959,0.285826432630578,2.01835951821649,2.1798003441664,1.98013371716565,2.06834745212444,0,2.535908257668,2.92531928243358,4.16029747645464,1.02882949704857,0,1.0656887160644,0.57191197463259,0.542621605391443,1.64648067356154,2.28015329005615,1.42156779497018,0,3.91871190177462,0.871533458600294,0.799783929456456,3.64871341923571,1.50677127429638,4.21667878966063,3.59437283237374,2.29723871668228,1.42636905040718,2.89562613335158,1.64381058040307,1.43248770591916,0,0.197030760201927,0,0.256686072559497,0.508189248444927,0,0,0,0,0,0,0,1.8403723757871,1.00034104211935,0.542530047399471,3.95144636908534,3.21172179834891,3.46945313074656,2.34282829985426,1.80567659836631,2.27407504055985,0,1.99267679560631,2.39679919104214,2.43274120510632,0,0.686286847621712,0.206768026122887,0,0.426910231213777,0.606255142892519,1.66435439510497,0.30239029332968,4.46594054073798,16.4204311418227,3.92924132206303,3.33161788064823,3.58195074346692,4.82561763430822,0,0.771048469013278,0.887808626565635,2.79232330446951,2.07701771673448,1.16210378459959,0.362578348774867,2.6065841139427,1.38121483403844,2.41110341145674,1.45672934405374,1.44236856455367,2.25599806453706,3.08061348417659,0,0,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| ||
|short_description=p7@MYOF | |||
}} | }} |
Latest revision as of 01:29, 20 September 2015
Short description: | p7@MYOF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_MYOF_5end |
Coexpression cluster: | NA |
Association with transcript: | -59bp_to_ENST00000371489, ENST00000371501, ENST00000371502, NM_013451, NM_133337, uc001kin.2, uc001kio.2, uc001kip.3, uc009xuf.2_5end |
EntrezGene: | MYOF |
HGNC: | 3656 |
UniProt: | F8W8J4C9JCN0Q9NZM1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 4.74e-16 | 48 |
phagocyte | 4.74e-16 | 48 |
classical monocyte | 1.30e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.30e-14 | 42 |
monopoietic cell | 1.14e-13 | 59 |
monocyte | 1.14e-13 | 59 |
monoblast | 1.14e-13 | 59 |
promonocyte | 1.14e-13 | 59 |
macrophage dendritic cell progenitor | 2.65e-13 | 61 |
endothelial cell of vascular tree | 8.57e-11 | 24 |
granulocyte monocyte progenitor cell | 1.71e-10 | 67 |
myeloid lineage restricted progenitor cell | 2.54e-10 | 66 |
fibroblast | 3.44e-10 | 76 |
mesodermal cell | 8.90e-10 | 121 |
blood vessel endothelial cell | 2.19e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.19e-09 | 18 |
squamous epithelial cell | 5.82e-09 | 63 |
lining cell | 1.43e-08 | 58 |
barrier cell | 1.43e-08 | 58 |
skin fibroblast | 1.88e-08 | 23 |
myeloid leukocyte | 1.95e-08 | 72 |
embryonic cell | 1.05e-07 | 250 |
somatic stem cell | 7.62e-07 | 433 |
multi fate stem cell | 8.26e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 6.00e-14 | 315 |
mesoderm-derived structure | 6.00e-14 | 315 |
presumptive mesoderm | 6.00e-14 | 315 |
musculoskeletal system | 6.65e-12 | 167 |
lateral plate mesoderm | 6.82e-12 | 203 |
skeletal system | 2.08e-10 | 100 |
vasculature | 4.76e-10 | 78 |
vascular system | 4.76e-10 | 78 |
bone marrow | 6.82e-10 | 76 |
blood vessel endothelium | 2.19e-09 | 18 |
endothelium | 2.19e-09 | 18 |
cardiovascular system endothelium | 2.19e-09 | 18 |
bone element | 2.50e-09 | 82 |
skeletal element | 2.73e-09 | 90 |
vessel | 8.90e-09 | 68 |
epithelial tube open at both ends | 1.71e-08 | 59 |
blood vessel | 1.71e-08 | 59 |
blood vasculature | 1.71e-08 | 59 |
vascular cord | 1.71e-08 | 59 |
artery | 2.98e-08 | 42 |
arterial blood vessel | 2.98e-08 | 42 |
arterial system | 2.98e-08 | 42 |
immune system | 3.42e-08 | 93 |
simple squamous epithelium | 9.88e-08 | 22 |
squamous epithelium | 4.44e-07 | 25 |
unilaminar epithelium | 6.69e-07 | 148 |