FFCP PHASE1:Hg19::chr12:55808623..55808650,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=34502 | |HGNC=34502 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000326184_5end | |association_with_transcript=0bp_to_ENST00000326184_5end | ||
|cluster_id=chr12:55808623..55808650,- | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_2_at_PHC1P1_5end | |description=CAGE_peak_2_at_PHC1P1_5end | ||
|id=chr12:55808623..55808650,- | |id=chr12:55808623..55808650,- | ||
|ontology_enrichment_celltype=CL:0002322!4.68e-07!5 | |ontology_enrichment_celltype=CL:0002322!4.68e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002322;9.77e-47;5!CL:0002321;1.47e-15;15!CL:0000540;1.48e-14;6!CL:0000404;1.48e-14;6!CL:0000039;3.21e-12;7!CL:0000586;3.21e-12;7!CL:0000148;5.60e-09;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,9.80e-47,5;CL:0000047,1.11e-18,8;CL:0000540,1.38e-14,6;CL:0000031,1.38e-14,6;CL:0000404,1.38e-14,6;CL:0000039,3.03e-12,7;CL:0000586,3.03e-12,7;CL:0000148,5.68e-09,10;CL:0000541,5.68e-09,10;CL:0000133,1.24e-08,59;CL:0000221,6.17e-07,72 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.21e-14;10!UBERON:0005564;1.21e-14;10!CL:0000031;1.48e-14;6!UBERON:0010226;3.00e-10;1!UBERON:0005754;3.00e-10;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.72e-28;8!UBERON:0003135;2.73e-20;11!UBERON:0000991;1.38e-10;21!UBERON:0002084;3.00e-10;1!UBERON:0000998;3.00e-10;1!UBERON:0006868;3.00e-10;1!UBERON:0002082;3.00e-10;1!UBERON:0003101;4.23e-10;22!UBERON:0000079;4.23e-10;22!UBERON:0000922;7.51e-08;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,7.32e-28,8;UBERON:0003135,2.90e-20,11;UBERON:0000991,1.42e-10,21;UBERON:0009196,1.42e-10,21;UBERON:0009117,1.42e-10,21;UBERON:0005564,1.42e-10,21;UBERON:0002084,2.50e-10,1;UBERON:0002082,2.50e-10,1;UBERON:0010226,2.50e-10,1;UBERON:0000998,3.01e-10,1;UBERON:0006868,3.01e-10,1;UBERON:0004176,4.36e-10,22;UBERON:0003101,4.36e-10,22;UBERON:0000079,4.36e-10,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0,0.273748850145768,0.502170558379211,0.0764134057479513,0,0,0,0,0,0,0,0.369754010166788,0.154934401160603,0,0,0,0.200544447470142,0,0,0,0,0.290796477559129,0,0.242584061187816,0,0.822335776043652,0.619412741790207,0.28769239232215,0,0.236482229888585,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0,0,0,0,0,0.393010762749165,0.411202997999018,0,0.32592226663359,0,0,0.111410456885174,0,0,0,0.128091319725675,0.130059347559878,0.164437904603676,0.276350017785848,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,2.43806866313962,0,0,0,0,0,0,0,0.0945348171640679,0.443458794925128,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06748995729705,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0.161646056818812,0,0.10075209822764,0,0,0,0,9.02605425359006,5.83130980614535,5.80969714347592,3.62813692553797,4.28945446488568,2.18986415445498,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,1.4763109092493,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,1.03993478527958,0,0.115930404975077,0,0.288732895522148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176096868026452,0.207328115540772,0,0,0,0,0,0,0.102827492703324,0,0.285826432630578,0,0.43596006883328,0.07333828582095,0.258543431515556,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0,0.205476322550383,0,0.224170287987055,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0.215714200818617,0,0,0,0,0,0,0,0.128139149255701,0,0.321707842287215,0,0.154209693802656,0,0,0,0,0.120859449591622,0,0,0,0.182091168006717,0.131124414959424,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,0,0.650060246036521,0,0,0,0.460511024178389,0,0,0,0.0852266274161009,0,0.165284915360978,0.192190067365106,0.127612712494584,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0.281695602532241,0.143411352204052,0,0,0,0,0,0.379473173765715,0,0.0962221127255121,0,0,0,0.43050537267123,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0.427296284509893,0,0,0,0,0.0711418433484141,0.159426272728822,0,0,0.423347165447766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0.242721043499027,0,0.284136146806413,0.47748896947538,0,0,0,0.562677665642051,0,0,0.422250816255987,0,0,0,0.102268682502155,0,0,0,0,0,0.394573622547734,0,0,0,0,0,0.260427761085233,0.174919999992391,0,0,0,0.236387681767936,0,0.874813840149763,0.347249989866585,0,0.361789315876224,0,0.663475559587348,0.295547618953547,0,0,0,0.0769502585037971,0,0,0.807818799687949,0.108647371922008,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.0884575645033392,0,0,0.123563938946503,0,0.134802265961354,0,0.468528891450678,0,0.19566461893209,0,0.394584402849391,0,0.30607276163049,0.189559738885464,0.150323419414493,0,0,0,0,0,0.569219092059585,0.138674673013139,0.173559738335131,0,0,0,0.171986032471617,0,0,0,0.193978032976839,0.176512253383001,0.451961481561065,0.274083849293502,0.397429223405979,0,0,0,0.213452994739353,0,0,0,0.514784993585894,0,0,0.235694034616795,0,0,0.203996435272644,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0.717873024576814,0.399358000997982,0,0,0.201550417460179,0,0,0.393915911536118,0,0.0674035438541849,0,0.0846733320657845,0,0.136203406111576,3.05430982083536,4.95141971750042,4.98528405635022,0,0,0.0607495566580247,0,0.0788057072991982,0.104909176269996,0,0,0,0,1.32418394073086,0,0,0,0,0,0,0,0.113312091520126,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0.496166021811951,0,0.243585196761792,0,0,0,0,0,0.157054096250234,0,0.244052529803926,0.1251909307065,0,0.443716206147409,0.124192805882767,0.276697269872462,0,0,0,0,0.936669811613763,0.434763085832475,0,0,0,0,0,0,0.228840068396924,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0.398095888698616,0.400027764663154,0,0,0,0,0,0,0,0,0.244736704506468,0,0.308801447160972,0,0,0.192914038270915,0,0.256241518587947,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218419276384028,0,0,0.123935764259002,0,0,0.0788617450012534,0,0,0,0,0,0.159633859057151,0.205116364240755,0.756215088665154,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0.327543835020193,0,0,0,0.206686796501184,0.0634158101939068,0.546974809018219,0,0,0.527613733078862,0.127762427639595,0,0,1.82089681270989,0,0,0,0.171488009437418,0,0.0657727735628491,0,0,0.235479278551542,0,0,0,0.215927591218621,0,0,0,0,0.173858272302579,0,0.207216164163037,0.17071847709395,0,0,0,0.0852134047591577,1.27016115057279,0,0,0,0.111855431797792,0,0,0,0,1.1598144313382,0.485710993059139,0,0.795803100645473,0.356760272332706,0,0,0,0,0.437119121007915,0.470317296361523,0.245148321753905,0,0,0,0,0,0,0.0644578879735772,0,0.178553938605658,0,0.0802413666891683,0,0.458729283404541,0.143339583151451,0,0.0679914901909147,0,0,0,0,0,0.378499274505237,0.327796715891087,0.633492505057185,1.22386595690378,1.60330443159336,0.459474497674225,4.26202816797038,0.0757786982182394,1.07185652062471,0,0.310298987585686,0.213233981900981,0,0.129177819672012,0.0620747142958579,0.112131862580613,0,0.606351566874658,0.435433495793923,0.684466602170562,0,0.143444410785353,0.665320713092027,0,0.213454691755431,0,0,0,0,0.406896178315738,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0,0.273748850145768,0.502170558379211,0.0764134057479513,0,0,0,0,0,0,0,0.369754010166788,0.154934401160603,0,0,0,0.200544447470142,0,0,0,0,0.290796477559129,0,0.242584061187816,0,0.822335776043652,0.619412741790207,0.28769239232215,0,0.236482229888585,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0,0,0,0,0,0.393010762749165,0.411202997999018,0,0.32592226663359,0,0,0.111410456885174,0,0,0,0.128091319725675,0.130059347559878,0.164437904603676,0.276350017785848,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,2.43806866313962,0,0,0,0,0,0,0,0.0945348171640679,0.443458794925128,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06748995729705,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0.161646056818812,0,0.10075209822764,0,0,0,0,9.02605425359006,5.83130980614535,5.80969714347592,3.62813692553797,4.28945446488568,2.18986415445498,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,1.4763109092493,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,1.03993478527958,0,0.115930404975077,0,0.288732895522148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176096868026452,0.207328115540772,0,0,0,0,0,0,0.102827492703324,0,0.285826432630578,0,0.43596006883328,0.07333828582095,0.258543431515556,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0,0.205476322550383,0,0.224170287987055,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0.215714200818617,0,0,0,0,0,0,0,0.128139149255701,0,0.321707842287215,0,0.154209693802656,0,0,0,0,0.120859449591622,0,0,0,0.182091168006717,0.131124414959424,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,0,0.650060246036521,0,0,0,0.460511024178389,0,0,0,0.0852266274161009,0,0.165284915360978,0.192190067365106,0.127612712494584,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0.281695602532241,0.143411352204052,0,0,0,0,0,0.379473173765715,0,0.0962221127255121,0,0,0,0.43050537267123,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0.427296284509893,0,0,0,0,0.0711418433484141,0.159426272728822,0,0,0.423347165447766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0.242721043499027,0,0.284136146806413,0.47748896947538,0,0,0,0.562677665642051,0,0,0.422250816255987,0,0,0,0.102268682502155,0,0,0,0,0,0.394573622547734,0,0,0,0,0,0.260427761085233,0.174919999992391,0,0,0,0.236387681767936,0,0.874813840149763,0.347249989866585,0,0.361789315876224,0,0.663475559587348,0.295547618953547,0,0,0,0.0769502585037971,0,0,0.807818799687949,0.108647371922008,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.0884575645033392,0,0,0.123563938946503,0,0.134802265961354,0,0.468528891450678,0,0.19566461893209,0,0.394584402849391,0,0.30607276163049,0.189559738885464,0.150323419414493,0,0,0,0,0,0.569219092059585,0.138674673013139,0.173559738335131,0,0,0,0.171986032471617,0,0,0,0.193978032976839,0.176512253383001,0.451961481561065,0.274083849293502,0.397429223405979,0,0,0,0.213452994739353,0,0,0,0.514784993585894,0,0,0.235694034616795,0,0,0.203996435272644,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0.717873024576814,0.399358000997982,0,0,0.201550417460179,0,0,0.393915911536118,0,0.0674035438541849,0,0.0846733320657845,0,0.136203406111576,3.05430982083536,4.95141971750042,4.98528405635022,0,0,0.0607495566580247,0,0.0788057072991982,0.104909176269996,0,0,0,0,1.32418394073086,0,0,0,0,0,0,0,0.113312091520126,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0.496166021811951,0,0.243585196761792,0,0,0,0,0,0.157054096250234,0,0.244052529803926,0.1251909307065,0,0.443716206147409,0.124192805882767,0.276697269872462,0,0,0,0,0.936669811613763,0.434763085832475,0,0,0,0,0,0,0.228840068396924,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0.398095888698616,0.400027764663154,0,0,0,0,0,0,0,0,0.244736704506468,0,0.308801447160972,0,0,0.192914038270915,0,0.256241518587947,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218419276384028,0,0,0.123935764259002,0,0,0.0788617450012534,0,0,0,0,0,0.159633859057151,0.205116364240755,0.756215088665154,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0.327543835020193,0,0,0,0.206686796501184,0.0634158101939068,0.546974809018219,0,0,0.527613733078862,0.127762427639595,0,0,1.82089681270989,0,0,0,0.171488009437418,0,0.0657727735628491,0,0,0.235479278551542,0,0,0,0.215927591218621,0,0,0,0,0.173858272302579,0,0.207216164163037,0.17071847709395,0,0,0,0.0852134047591577,1.27016115057279,0,0,0,0.111855431797792,0,0,0,0,1.1598144313382,0.485710993059139,0,0.795803100645473,0.356760272332706,0,0,0,0,0.437119121007915,0.470317296361523,0.245148321753905,0,0,0,0,0,0,0.0644578879735772,0,0.178553938605658,0,0.0802413666891683,0,0.458729283404541,0.143339583151451,0,0.0679914901909147,0,0,0,0,0,0.378499274505237,0.327796715891087,0.633492505057185,1.22386595690378,1.60330443159336,0.459474497674225,4.26202816797038,0.0757786982182394,1.07185652062471,0,0.310298987585686,0.213233981900981,0,0.129177819672012,0.0620747142958579,0.112131862580613,0,0.606351566874658,0.435433495793923,0.684466602170562,0,0.143444410785353,0.665320713092027,0,0.213454691755431,0,0,0,0,0.406896178315738,0,0.201273793591026,0 | ||
|short_description=p2@PHC1P1 | |short_description=p2@PHC1P1 | ||
}} | }} |
Latest revision as of 07:32, 19 September 2015
Short description: | p2@PHC1P1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PHC1P1_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000326184_5end |
EntrezGene: | NA |
HGNC: | 34502 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 9.80e-47 | 5 |
neuronal stem cell | 1.11e-18 | 8 |
neuron | 1.38e-14 | 6 |
neuroblast | 1.38e-14 | 6 |
electrically signaling cell | 1.38e-14 | 6 |
germ line cell | 3.03e-12 | 7 |
germ cell | 3.03e-12 | 7 |
melanocyte | 5.68e-09 | 10 |
melanoblast | 5.68e-09 | 10 |
neurectodermal cell | 1.24e-08 | 59 |
ectodermal cell | 6.17e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
testis | 7.32e-28 | 8 |
male reproductive organ | 2.90e-20 | 11 |
gonad | 1.42e-10 | 21 |
indifferent external genitalia | 1.42e-10 | 21 |
indifferent gonad | 1.42e-10 | 21 |
gonad primordium | 1.42e-10 | 21 |
heart left ventricle | 2.50e-10 | 1 |
cardiac ventricle | 2.50e-10 | 1 |
future cardiac ventricle | 2.50e-10 | 1 |
seminal vesicle | 3.01e-10 | 1 |
seminal fluid secreting gland | 3.01e-10 | 1 |
external genitalia | 4.36e-10 | 22 |
male organism | 4.36e-10 | 22 |
male reproductive system | 4.36e-10 | 22 |