FFCP PHASE1:Hg19::chr17:75452447..75452460,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:75452447..75452460,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_at_chr17:75452447..75452460,+ | |description=CAGE_peak_at_chr17:75452447..75452460,+ | ||
|id=chr17:75452447..75452460,+ | |id=chr17:75452447..75452460,+ | ||
|ontology_enrichment_celltype=CL:0000791!2.95e-42!18;CL:0000789!2.95e-42!18;CL:0002420!2.95e-42!18;CL:0002419!2.95e-42!18;CL:0000790!2.95e-42!18;CL:0000084!2.54e-33!25;CL:0000827!2.54e-33!25;CL:0000625!1.67e-25!11;CL:0000838!6.38e-25!52;CL:0000542!2.39e-24!53;CL:0000051!2.39e-24!53;CL:0000624!1.71e-21!6;CL:0002087!3.23e-12!119;CL:0000898!2.20e-11!3;CL:0000623!2.44e-11!3;CL:0000825!2.44e-11!3;CL:0000842!2.53e-11!3;CL:0000738!1.64e-09!140;CL:0000224!1.35e-08!4;CL:0000815!2.24e-08!2;CL:0000792!2.24e-08!2;CL:0002677!2.24e-08!2;CL:0002031!2.48e-08!124 | |ontology_enrichment_celltype=CL:0000791!2.95e-42!18;CL:0000789!2.95e-42!18;CL:0002420!2.95e-42!18;CL:0002419!2.95e-42!18;CL:0000790!2.95e-42!18;CL:0000084!2.54e-33!25;CL:0000827!2.54e-33!25;CL:0000625!1.67e-25!11;CL:0000838!6.38e-25!52;CL:0000542!2.39e-24!53;CL:0000051!2.39e-24!53;CL:0000624!1.71e-21!6;CL:0002087!3.23e-12!119;CL:0000898!2.20e-11!3;CL:0000623!2.44e-11!3;CL:0000825!2.44e-11!3;CL:0000842!2.53e-11!3;CL:0000738!1.64e-09!140;CL:0000224!1.35e-08!4;CL:0000815!2.24e-08!2;CL:0000792!2.24e-08!2;CL:0002677!2.24e-08!2;CL:0002031!2.48e-08!124 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.76e-26;18!CL:0000789;3.76e-26;18!CL:0002419;3.76e-26;18!CL:0000624;1.42e-20;6!CL:0000084;8.87e-19;25!CL:0000625;2.07e-11;11!CL:0000815;6.35e-08;2!CL:0000792;6.35e-08;2!CL:0002677;6.35e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,5.73e-26,18;CL:0000789,5.73e-26,18;CL:0002420,5.73e-26,18;CL:0002419,5.73e-26,18;CL:0000790,5.73e-26,18;CL:0000624,1.52e-20,6;CL:0000084,1.20e-18,25;CL:0000827,1.20e-18,25;CL:0000625,2.80e-11,11;CL:0000838,8.04e-09,52;CL:0000542,1.20e-08,53;CL:0000051,1.20e-08,53;CL:0000815,7.52e-08,2;CL:0000792,7.52e-08,2;CL:0002677,7.52e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000790;3.76e-26;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.48e-10!15;UBERON:0000179!1.48e-10!15;UBERON:0000463!1.48e-10!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002372;1.50e-14;1!UBERON:0001961;1.50e-14;1!UBERON:0001744;1.50e-14;1!UBERON:0001042;1.50e-14;1!UBERON:0001735;1.50e-14;1!UBERON:0006562;6.35e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002372,2.75e-14,1;UBERON:0001961,2.75e-14,1;UBERON:0001744,2.75e-14,1;UBERON:0001735,2.75e-14,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0.868043482863407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7703879310245,0.393010762749165,2.67281948699362,0.83593247695339,0.651844533267181,0.473447805734733,1.94826728407911,0.891283655081389,1.47302953737419,0,1.89562704635511,1.92136979588513,1.56071217071854,0.328875809207352,0,0.869409257205157,3.26230438956533,1.87278579662799,5.22677619024884,0.566546713487831,0.383220493601921,0,1.51811815211702,0.95569624297229,1.30216690771284,0.950452044448374,1.05402583354441,0.895906278080929,0,0.947109008176067,0,0.201606743224732,0.534880391567015,1.59306844271079,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.788123040807709,0.431255149719035,0.898401253958239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.647142602455851,0.74709290462411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0.569647187174163,0.238231775457789,0.822724546172388,0,0,0,0,0,0,0,0,0.142283686696828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193766729508018,0,0,0,0,0,0,1.14498490124799,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.603821380773079,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0.868043482863407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7703879310245,0.393010762749165,2.67281948699362,0.83593247695339,0.651844533267181,0.473447805734733,1.94826728407911,0.891283655081389,1.47302953737419,0,1.89562704635511,1.92136979588513,1.56071217071854,0.328875809207352,0,0.869409257205157,3.26230438956533,1.87278579662799,5.22677619024884,0.566546713487831,0.383220493601921,0,1.51811815211702,0.95569624297229,1.30216690771284,0.950452044448374,1.05402583354441,0.895906278080929,0,0.947109008176067,0,0.201606743224732,0.534880391567015,1.59306844271079,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.788123040807709,0.431255149719035,0.898401253958239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.647142602455851,0.74709290462411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0.569647187174163,0.238231775457789,0.822724546172388,0,0,0,0,0,0,0,0,0.142283686696828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193766729508018,0,0,0,0,0,0,1.14498490124799,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.603821380773079,0 | ||
|short_description=p@chr17:75452447..75452460,+ | |short_description=p@chr17:75452447..75452460,+ | ||
}} | }} |
Latest revision as of 21:45, 25 July 2015
Short description: | p@chr17:75452447..75452460, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:75452447..75452460, + |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 5.73e-26 | 18 |
alpha-beta T cell | 5.73e-26 | 18 |
immature T cell | 5.73e-26 | 18 |
mature T cell | 5.73e-26 | 18 |
immature alpha-beta T cell | 5.73e-26 | 18 |
CD4-positive, alpha-beta T cell | 1.52e-20 | 6 |
T cell | 1.20e-18 | 25 |
pro-T cell | 1.20e-18 | 25 |
CD8-positive, alpha-beta T cell | 2.80e-11 | 11 |
lymphoid lineage restricted progenitor cell | 8.04e-09 | 52 |
lymphocyte | 1.20e-08 | 53 |
common lymphoid progenitor | 1.20e-08 | 53 |
regulatory T cell | 7.52e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 7.52e-08 | 2 |
naive regulatory T cell | 7.52e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
tonsil | 2.75e-14 | 1 |
mucosa-associated lymphoid tissue | 2.75e-14 | 1 |
lymphoid tissue | 2.75e-14 | 1 |
tonsillar ring | 2.75e-14 | 1 |