FFCP PHASE1:Hg19::chr1:16007995..16008026,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:16007995..16008026,+ | |||
|coexpression_cluster_id=C88 | |||
|description=CAGE_peak_at_chr1:16007995..16008026,+ | |description=CAGE_peak_at_chr1:16007995..16008026,+ | ||
|id=chr1:16007995..16008026,+ | |id=chr1:16007995..16008026,+ | ||
|ontology_enrichment_celltype=CL:0000147!1.10e-10!14;CL:0000066!8.19e-10!254;CL:0000235!1.74e-08!10;CL:0000622!6.60e-07!5 | |ontology_enrichment_celltype=CL:0000147!1.10e-10!14;CL:0000066!8.19e-10!254;CL:0000235!1.74e-08!10;CL:0000622!6.60e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000147;9.43e-31;14!CL:0000148;3.33e-22;10!CL:0000235;2.48e-18;6!CL:0000149;8.44e-18;4!CL:0002567;6.85e-15;3!CL:0002619;1.85e-14;3!CL:0000622;1.38e-13;5!CL:0002586;1.89e-13;3!CL:0002623;3.22e-13;3!CL:0000150;1.07e-11;9!CL:0000154;2.41e-11;6!CL:0000710;1.42e-10;20!CL:0000075;1.16e-09;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,7.49e-31,14;CL:0000148,3.29e-22,10;CL:0000541,3.29e-22,10;CL:0000235,3.26e-18,6;CL:0000149,6.24e-18,4;CL:0002567,6.87e-15,3;CL:0002619,1.94e-14,3;CL:0000622,1.09e-13,5;CL:0002586,1.40e-13,3;CL:0002623,2.15e-13,3;CL:0000150,9.23e-12,9;CL:0000154,1.99e-11,6;CL:0000710,1.42e-10,20;CL:0000075,1.24e-09,27;CL:0002077,2.19e-07,34 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;9.82e-10;2!DOID:114;3.50e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,8.44e-10,2;DOID:114,1.93e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0001444!1.46e-09!48;UBERON:0000166!3.15e-08!21;UBERON:0005085!2.19e-07!29;UBERON:0000062!2.23e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0001781;1.89e-13;3!UBERON:0001782;1.89e-13;3!UBERON:0000966;2.97e-08;5!UBERON:0005388;2.97e-08;5!UBERON:0001802;2.97e-08;5!UBERON:0010371;3.00e-07;31!UBERON:0001044;7.81e-07;6!UBERON:0003293;7.81e-07;6!UBERON:0003294;7.81e-07;6!UBERON:0010047;7.81e-07;6!UBERON:0003408;7.81e-07;6!UBERON:0000167;7.81e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,1.40e-13,3;UBERON:0005424,1.40e-13,3;UBERON:0001781,2.64e-10,4;UBERON:0000966,5.22e-07,6;UBERON:0005388,5.22e-07,6;UBERON:0001802,5.22e-07,6;UBERON:0001044,6.42e-07,6;UBERON:0003293,6.42e-07,6;UBERON:0003294,6.42e-07,6;UBERON:0010047,6.42e-07,6;UBERON:0000167,6.42e-07,6 | |||
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| ||
|short_description=p@chr1:16007995..16008026,+ | |short_description=p@chr1:16007995..16008026,+ | ||
}} | }} |
Latest revision as of 23:14, 27 July 2015
Short description: | p@chr1:16007995..16008026, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:16007995..16008026, + |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 7.49e-31 | 14 |
melanocyte | 3.29e-22 | 10 |
melanoblast | 3.29e-22 | 10 |
macrophage | 3.26e-18 | 6 |
visual pigment cell | 6.24e-18 | 4 |
light melanocyte | 6.87e-15 | 3 |
adult endothelial progenitor cell | 1.94e-14 | 3 |
acinar cell | 1.09e-13 | 5 |
retinal pigment epithelial cell | 1.40e-13 | 3 |
acinar cell of salivary gland | 2.15e-13 | 3 |
glandular epithelial cell | 9.23e-12 | 9 |
protein secreting cell | 1.99e-11 | 6 |
neurecto-epithelial cell | 1.42e-10 | 20 |
columnar/cuboidal epithelial cell | 1.24e-09 | 27 |
ecto-epithelial cell | 2.19e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 1.40e-13 | 3 |
presumptive retinal pigmented epithelium | 1.40e-13 | 3 |
layer of retina | 2.64e-10 | 4 |
retina | 5.22e-07 | 6 |
photoreceptor array | 5.22e-07 | 6 |
posterior segment of eyeball | 5.22e-07 | 6 |
saliva-secreting gland | 6.42e-07 | 6 |
gland of oral region | 6.42e-07 | 6 |
gland of foregut | 6.42e-07 | 6 |
oral gland | 6.42e-07 | 6 |
oral cavity | 6.42e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
melanoma | 8.44e-10 | 2 |
heart disease | 1.93e-09 | 2 |