FFCP PHASE1:Hg19::chr16:71660111..71660123,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=91862 | |EntrezGene=91862 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30525 | |HGNC=30525 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=21bp_to_ENST00000299952_5end | |association_with_transcript=21bp_to_ENST00000299952_5end | ||
|cluster_id=chr16:71660111..71660123,+ | |||
|description=CAGE_peak_3_at_MARVELD3_5end | |description=CAGE_peak_3_at_MARVELD3_5end | ||
|id=chr16:71660111..71660123,+ | |id=chr16:71660111..71660123,+ | ||
|ontology_enrichment_celltype=CL:0000066!4.05e-26!254;CL:0000223!5.05e-22!59;CL:0002076!4.05e-20!43;CL:0002368!7.65e-12!13;CL:0002202!5.50e-08!9;CL:0002632!5.50e-08!9;CL:0002251!6.17e-08!21;CL:0000082!1.47e-07!19;CL:0002159!3.35e-07!13 | |ontology_enrichment_celltype=CL:0000066!4.05e-26!254;CL:0000223!5.05e-22!59;CL:0002076!4.05e-20!43;CL:0002368!7.65e-12!13;CL:0002202!5.50e-08!9;CL:0002632!5.50e-08!9;CL:0002251!6.17e-08!21;CL:0000082!1.47e-07!19;CL:0002159!3.35e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002368;1.40e-10;13!CL:0002202;2.99e-08;9!CL:0002632;2.99e-08;9!CL:0000317;8.07e-08;2!CL:1000448;8.07e-08;2!CL:0002308;8.07e-08;2!CL:0002140;8.07e-08;2!CL:0002076;2.06e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.68e-11,253;CL:0000223,2.01e-10,58;CL:0002076,2.03e-10,42;CL:0002368,2.26e-10,13;CL:0002202,5.39e-08,9;CL:0002632,5.39e-08,9;CL:0000317,7.87e-08,2;CL:1000448,7.87e-08,2;CL:0002308,7.87e-08,2;CL:0002140,7.87e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000223;5.82e-07;58 | |||
|ontology_enrichment_disease=DOID:305!1.73e-23!106;DOID:0050687!1.41e-15!143;DOID:1749!5.31e-15!14;DOID:299!1.95e-09!25 | |ontology_enrichment_disease=DOID:305!1.73e-23!106;DOID:0050687!1.41e-15!143;DOID:1749!5.31e-15!14;DOID:299!1.95e-09!25 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.66e-19;14!DOID:5093;3.27e-08;4!DOID:1612;3.27e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.41e-19,14;DOID:5093,3.30e-08,4;DOID:1612,3.30e-08,4;DOID:305,3.56e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!9.34e-33!169;UBERON:0000925!9.34e-33!169;UBERON:0006595!9.34e-33!169;UBERON:0001007!4.14e-27!155;UBERON:0001555!4.14e-27!155;UBERON:0007026!4.14e-27!155;UBERON:0004921!6.17e-24!129;UBERON:0004185!6.17e-24!129;UBERON:0000077!8.03e-20!130;UBERON:0005911!1.76e-18!82;UBERON:0001004!5.51e-16!72;UBERON:0001041!5.73e-14!98;UBERON:0000466!3.98e-13!126;UBERON:0000065!6.01e-13!53;UBERON:0005178!4.12e-12!34;UBERON:0002224!4.12e-12!34;UBERON:0005181!1.47e-11!35;UBERON:0005177!2.83e-11!107;UBERON:0005153!2.93e-11!37;UBERON:0000464!1.98e-10!104;UBERON:0009569!6.61e-10!113;UBERON:0002048!1.57e-09!22;UBERON:0000117!1.57e-09!22;UBERON:0000171!1.57e-09!22;UBERON:0000170!1.57e-09!22;UBERON:0005597!1.57e-09!22;UBERON:0000118!1.57e-09!22;UBERON:0000915!2.79e-09!52;UBERON:0003929!5.13e-09!54;UBERON:0008947!5.49e-09!38;UBERON:0003258!5.49e-09!38;UBERON:0005157!1.13e-08!51;UBERON:0000161!1.33e-08!35;UBERON:0000072!1.58e-08!46;UBERON:0004807!1.97e-08!28;UBERON:0001048!3.37e-08!168;UBERON:0000062!4.67e-08!511;UBERON:0000481!5.01e-08!347;UBERON:0000344!5.65e-08!12;UBERON:0004802!1.47e-07!19;UBERON:0000115!1.47e-07!19;UBERON:0000160!1.78e-07!27;UBERON:0005409!2.14e-07!35;UBERON:0007196!2.36e-07!14;UBERON:0001558!2.36e-07!14;UBERON:0003104!2.75e-07!238;UBERON:0009142!2.75e-07!238;UBERON:0002530!8.43e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;8.85e-10;17!UBERON:0004921;2.32e-09;33!UBERON:0005409;3.18e-09;22!UBERON:0007196;4.99e-09;15!UBERON:0001558;4.99e-09;15!UBERON:0002419;8.07e-08;2!UBERON:0007771;8.07e-08;2!UBERON:0003297;8.07e-08;2!UBERON:0001821;8.07e-08;2!UBERON:0003487;8.07e-08;2!UBERON:0001820;8.07e-08;2!UBERON:0003126;3.34e-07;7!UBERON:0001005;3.34e-07;7!UBERON:0003127;3.91e-07;2!UBERON:0003343;4.51e-07;4!UBERON:0004785;4.51e-07;4!UBERON:0000059;9.74e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.27e-16,160;UBERON:0000925,3.27e-16,160;UBERON:0006595,3.27e-16,160;UBERON:0001007,7.01e-13,145;UBERON:0001555,7.01e-13,145;UBERON:0007026,7.01e-13,145;UBERON:0004921,1.12e-11,118;UBERON:0000160,3.19e-10,17;UBERON:0007196,8.76e-09,15;UBERON:0001558,8.76e-09,15;UBERON:0005409,2.75e-08,25;UBERON:0002419,7.87e-08,2;UBERON:0007771,7.87e-08,2;UBERON:0003297,7.87e-08,2;UBERON:0001821,7.87e-08,2;UBERON:0003487,7.87e-08,2;UBERON:0001820,7.87e-08,2;UBERON:0005089,7.87e-08,2;UBERON:0005088,7.87e-08,2;UBERON:0001004,1.40e-07,74;UBERON:0000915,3.71e-07,52;UBERON:0003126,3.84e-07,7;UBERON:0001005,3.84e-07,7;UBERON:0000059,4.41e-07,11;UBERON:0003127,4.73e-07,2;UBERON:0005178,5.45e-07,34;UBERON:0002224,5.45e-07,34;UBERON:0003343,7.92e-07,4;UBERON:0004785,7.92e-07,4;UBERON:0005181,9.79e-07,35 | |||
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| ||
|short_description=p3@MARVELD3 | |short_description=p3@MARVELD3 | ||
}} | }} |
Latest revision as of 18:02, 17 September 2015
Short description: | p3@MARVELD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MARVELD3_5end |
Coexpression cluster: | NA |
Association with transcript: | 21bp_to_ENST00000299952_5end |
EntrezGene: | MARVELD3 |
HGNC: | 30525 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.68e-11 | 253 |
endodermal cell | 2.01e-10 | 58 |
endo-epithelial cell | 2.03e-10 | 42 |
respiratory epithelial cell | 2.26e-10 | 13 |
epithelial cell of tracheobronchial tree | 5.39e-08 | 9 |
epithelial cell of lower respiratory tract | 5.39e-08 | 9 |
sebum secreting cell | 7.87e-08 | 2 |
epithelial cell of sweat gland | 7.87e-08 | 2 |
epithelial cell of skin gland | 7.87e-08 | 2 |
acinar cell of sebaceous gland | 7.87e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 3.27e-16 | 160 |
endoderm | 3.27e-16 | 160 |
presumptive endoderm | 3.27e-16 | 160 |
digestive system | 7.01e-13 | 145 |
digestive tract | 7.01e-13 | 145 |
primitive gut | 7.01e-13 | 145 |
subdivision of digestive tract | 1.12e-11 | 118 |
intestine | 3.19e-10 | 17 |
tracheobronchial tree | 8.76e-09 | 15 |
lower respiratory tract | 8.76e-09 | 15 |
gastrointestinal system | 2.75e-08 | 25 |
skin gland | 7.87e-08 | 2 |
epidermis gland | 7.87e-08 | 2 |
gland of integumental system | 7.87e-08 | 2 |
sebaceous gland | 7.87e-08 | 2 |
skin sebaceous gland | 7.87e-08 | 2 |
sweat gland | 7.87e-08 | 2 |
sweat gland placode | 7.87e-08 | 2 |
sebaceous gland placode | 7.87e-08 | 2 |
respiratory system | 1.40e-07 | 74 |
thoracic segment of trunk | 3.71e-07 | 52 |
trachea | 3.84e-07 | 7 |
respiratory airway | 3.84e-07 | 7 |
large intestine | 4.41e-07 | 11 |
open tracheal system trachea | 4.73e-07 | 2 |
thoracic cavity element | 5.45e-07 | 34 |
thoracic cavity | 5.45e-07 | 34 |
mucosa of oral region | 7.92e-07 | 4 |
respiratory system mucosa | 7.92e-07 | 4 |
thoracic segment organ | 9.79e-07 | 35 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.41e-19 | 14 |
thoracic cancer | 3.30e-08 | 4 |
breast cancer | 3.30e-08 | 4 |
carcinoma | 3.56e-08 | 106 |