FFCP PHASE1:Hg19::chr20:62369505..62369588,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54923 | |EntrezGene=54923 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26016 | |HGNC=26016 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000494776_5end | |association_with_transcript=0bp_to_ENST00000494776_5end | ||
|cluster_id=chr20:62369505..62369588,+ | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_2_at_LIME1_5end | |description=CAGE_peak_2_at_LIME1_5end | ||
|id=chr20:62369505..62369588,+ | |id=chr20:62369505..62369588,+ | ||
|ontology_enrichment_celltype=CL:0000542!2.19e-11!53;CL:0000051!2.19e-11!53;CL:0000791!3.63e-11!18;CL:0000789!3.63e-11!18;CL:0002420!3.63e-11!18;CL:0002419!3.63e-11!18;CL:0000790!3.63e-11!18;CL:0000838!7.78e-11!52;CL:0000084!2.09e-10!25;CL:0000827!2.09e-10!25;CL:0000181!1.30e-07!12;CL:0000417!1.30e-07!12;CL:0000668!1.30e-07!12;CL:0000414!1.30e-07!12;CL:0000412!1.30e-07!12;CL:0000182!1.30e-07!12 | |ontology_enrichment_celltype=CL:0000542!2.19e-11!53;CL:0000051!2.19e-11!53;CL:0000791!3.63e-11!18;CL:0000789!3.63e-11!18;CL:0002420!3.63e-11!18;CL:0002419!3.63e-11!18;CL:0000790!3.63e-11!18;CL:0000838!7.78e-11!52;CL:0000084!2.09e-10!25;CL:0000827!2.09e-10!25;CL:0000181!1.30e-07!12;CL:0000417!1.30e-07!12;CL:0000668!1.30e-07!12;CL:0000414!1.30e-07!12;CL:0000412!1.30e-07!12;CL:0000182!1.30e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;3.01e-17;12!CL:0000791;4.98e-10;18!CL:0000789;4.98e-10;18!CL:0002419;4.98e-10;18!CL:0000136;6.51e-08;13!CL:0000084;5.79e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,3.29e-17,12;CL:0000791,4.28e-10,18;CL:0000789,4.28e-10,18;CL:0002420,4.28e-10,18;CL:0002419,4.28e-10,18;CL:0000790,4.28e-10,18;CL:0000084,5.21e-07,25;CL:0000827,5.21e-07,25;CL:0000223,8.43e-07,58;CL:0000136,9.78e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0004161;5.72e-14;11!UBERON:0009497;1.03e-11;13!CL:0000790;4.98e-10;18!UBERON:0003104;6.35e-10;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005057!2.91e-12!26;UBERON:0008835!2.68e-09!22;UBERON:0003894!2.68e-09!22;UBERON:0007499!5.32e-09!25;UBERON:0002107!9.05e-09!19;UBERON:0006925!9.05e-09!19;UBERON:0008836!9.05e-09!19;UBERON:0009497!9.29e-09!25;UBERON:0000015!9.29e-09!25;UBERON:0002423!9.29e-09!25;UBERON:0006235!9.29e-09!25;UBERON:0004161!9.29e-09!25;UBERON:0009854!1.09e-08!23;UBERON:0009856!1.84e-08!26;UBERON:0003929!1.67e-07!54 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.37e-17;19!UBERON:0006925;2.37e-17;19!UBERON:0002423;9.05e-13;25!UBERON:0002365;1.08e-09;31!UBERON:0002330;1.08e-09;31!UBERON:0002368;1.65e-08;33!UBERON:0000160;1.22e-07;17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.55e-17,19;UBERON:0006925,2.55e-17,19;UBERON:0008836,2.55e-17,19;UBERON:0007499,1.05e-15,25;UBERON:0009856,5.07e-15,26;UBERON:0008835,1.01e-14,22;UBERON:0003894,1.01e-14,22;UBERON:0009854,5.26e-14,23;UBERON:0009497,9.54e-13,25;UBERON:0000015,9.54e-13,25;UBERON:0002423,9.54e-13,25;UBERON:0006235,9.54e-13,25;UBERON:0004161,9.54e-13,25;UBERON:0003929,1.11e-10,54;UBERON:0002368,1.42e-10,35;UBERON:0002365,5.99e-10,31;UBERON:0002330,5.99e-10,31;UBERON:0000949,8.65e-08,45;UBERON:0000160,1.24e-07,17;UBERON:0005172,1.28e-07,54;UBERON:0005173,1.28e-07,54;UBERON:0004921,2.35e-07,118;UBERON:0005911,3.43e-07,82 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,3.3954131665979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0.687720651731561,0.738905305049512,0.944529375764151,0,0,0,0,0,0,0,0,0.880801318004542,0,0.401088894940283,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,0,0,1.05353633910031,0,1.17903228824749,1.23360899399706,0.668745981562712,0.32592226663359,0.946895611469467,0,0.668462741311041,2.06224135232386,0.221533894583621,0.812411591295047,1.15282187753108,0.520237390239513,0,0.552700035571697,0.579606171470105,0.889719378972363,0.267540828089713,1.04535523804977,1.24640276967323,0.766440987203842,1.71813722741315,0,1.27426165729639,0,2.85135613334512,0.301150238155546,0.255973222308837,0,0.473554504088034,1.64225599384209,0.403213486449465,0.267440195783507,0.144824403882799,2.43806866313962,0,0,0,0,0,0,0,0.0945348171640679,0,0,26.5887523260357,0.728590576585084,0,0,0,0,0.715471872916026,0.571994910780128,1.48583000531826,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0.760272105718513,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.132529768321485,0.348581828608555,0,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,178.724599098782,25.5535076336183,23.6315962672562,0.441463099414651,8.24022538238861,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.25248486685276,0,0,0,1.71072446022705,0,0,0,0.224262168690721,0,0.1466765716419,0,0,0,0,0,0.257207374262142,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,1.45710687191585,0.197030760201927,0.431255149719035,0.128343036279748,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0.343143423810856,0.620304078368662,0,0.106727557803444,0.303127571446259,0,0,0,0,0,0,0,0,0,0.308419387605311,0,0,0,0,2.77976734060731,0,0,0,0,0,0.451199612907412,0.0770153371044148,0.784349769176855,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0.256450125116389,0,0,91.2943363198819,0,0,0,0,0,0,0,0.15350367472613,0.137836572484531,0.107420244868274,0,0.0852266274161009,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0.670302275535787,0,91.5077743550293,0,0,0,0,0,1.52927441428475,0.569647187174163,0.238231775457789,0,0,0.540031437238115,0.79312517629427,0,0,0,0.371606350251437,0,0.853702120180969,0.318852545457645,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,1.46508179271894,0,0.445773537109913,0,0,0,0.307160702099232,0,0,0,0,0.211125408127993,0.19924798825107,0,0,0,0,0,0.179736702294654,0,0.511572370226872,0,0,0,0.969332746095218,0,0,0,0,2.17499872630438,0.227586896570999,2.54253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55488378577335,0,0,2.29989667708682,1.22206028986725,0,0,0,0,0,0,0.547364367646998,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0.174118413160805,0.698906672968121,0,0,0,0,0,0,0,0,0,0,0,0.400794101257669,0,0,0,0,0.171594997861965,0.576219191952599,0,0,0,0,0,0.288950589901519,0,0,1.27746588066972,0,0,0.558564802544508,0,0,0,0.429226048136571,0,0,0.360299883542404,1.16495949527454,93.5156373986745,100.30009964988,92.3428550802333,0,0.76205998859206,0,0.136203406111576,1.12527203925513,1.10031549277787,0.415440338029185,0,0,0,0,12.5301074605725,17.7296507896294,0.105600336519406,0,0.383830394638891,0,0,0,0,0,0,0,0,0,0,88.6641013752399,58.3030311213774,0,0,0,0,0,0,0,0.496166021811951,0.790446527591777,0,0,8.16026705054211,1.0027595760908,2.14441903734423,14.4263957512314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0.358177682162975,0.308801447160972,0,0,0,0.168942440653073,0,0,0,0.138258436151731,0,0.132864840313363,0,0.327609848846413,0,0,0,0,0.516644938982447,0,0.184105950251841,0,0,0,0,0.157265941855896,0,0.169732529954025,0.212574920101683,0,0,0,0.70975570501128,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443568258651136,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0.345701962667338,0.514464028312255,0,0,0.709163045303809,0.111231401892069,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0.392600934460972,9.02192644868794,0,0.102662806856247,0,0.485710993059139,0,0.198950775161368,0,0,0,0,3.78153374728929,0.437119121007915,0,0,0,0,0,0,0,0.187967835959707,0.45120521581504,0,0,0,0,0,0.458729283404541,0,0.157771562193185,0,0,1.0580536810308,0,0,0,0,0,0.126698501011437,0.305966489225945,0.801652215796681,0,0.250707539292375,0,0.267964130156178,0,0,0,0.23806443146374,0.452122368852043,0.186224142887574,0,0,0,0,0,0.26940821205835,0.215166616178029,0,0.162806537221949,0.853818767021724,0,0,0,0.122241444182866,0,0,0.402547587182052,0.320568492303233 | |phase1_expression=0,0.214100523890983,0,0,0,0,0,0,3.3954131665979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0.687720651731561,0.738905305049512,0.944529375764151,0,0,0,0,0,0,0,0,0.880801318004542,0,0.401088894940283,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,0,0,1.05353633910031,0,1.17903228824749,1.23360899399706,0.668745981562712,0.32592226663359,0.946895611469467,0,0.668462741311041,2.06224135232386,0.221533894583621,0.812411591295047,1.15282187753108,0.520237390239513,0,0.552700035571697,0.579606171470105,0.889719378972363,0.267540828089713,1.04535523804977,1.24640276967323,0.766440987203842,1.71813722741315,0,1.27426165729639,0,2.85135613334512,0.301150238155546,0.255973222308837,0,0.473554504088034,1.64225599384209,0.403213486449465,0.267440195783507,0.144824403882799,2.43806866313962,0,0,0,0,0,0,0,0.0945348171640679,0,0,26.5887523260357,0.728590576585084,0,0,0,0,0.715471872916026,0.571994910780128,1.48583000531826,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0.760272105718513,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.132529768321485,0.348581828608555,0,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,178.724599098782,25.5535076336183,23.6315962672562,0.441463099414651,8.24022538238861,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.25248486685276,0,0,0,1.71072446022705,0,0,0,0.224262168690721,0,0.1466765716419,0,0,0,0,0,0.257207374262142,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,1.45710687191585,0.197030760201927,0.431255149719035,0.128343036279748,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0.343143423810856,0.620304078368662,0,0.106727557803444,0.303127571446259,0,0,0,0,0,0,0,0,0,0.308419387605311,0,0,0,0,2.77976734060731,0,0,0,0,0,0.451199612907412,0.0770153371044148,0.784349769176855,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0.256450125116389,0,0,91.2943363198819,0,0,0,0,0,0,0,0.15350367472613,0.137836572484531,0.107420244868274,0,0.0852266274161009,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0.670302275535787,0,91.5077743550293,0,0,0,0,0,1.52927441428475,0.569647187174163,0.238231775457789,0,0,0.540031437238115,0.79312517629427,0,0,0,0.371606350251437,0,0.853702120180969,0.318852545457645,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,1.46508179271894,0,0.445773537109913,0,0,0,0.307160702099232,0,0,0,0,0.211125408127993,0.19924798825107,0,0,0,0,0,0.179736702294654,0,0.511572370226872,0,0,0,0.969332746095218,0,0,0,0,2.17499872630438,0.227586896570999,2.54253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55488378577335,0,0,2.29989667708682,1.22206028986725,0,0,0,0,0,0,0.547364367646998,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0.174118413160805,0.698906672968121,0,0,0,0,0,0,0,0,0,0,0,0.400794101257669,0,0,0,0,0.171594997861965,0.576219191952599,0,0,0,0,0,0.288950589901519,0,0,1.27746588066972,0,0,0.558564802544508,0,0,0,0.429226048136571,0,0,0.360299883542404,1.16495949527454,93.5156373986745,100.30009964988,92.3428550802333,0,0.76205998859206,0,0.136203406111576,1.12527203925513,1.10031549277787,0.415440338029185,0,0,0,0,12.5301074605725,17.7296507896294,0.105600336519406,0,0.383830394638891,0,0,0,0,0,0,0,0,0,0,88.6641013752399,58.3030311213774,0,0,0,0,0,0,0,0.496166021811951,0.790446527591777,0,0,8.16026705054211,1.0027595760908,2.14441903734423,14.4263957512314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0.358177682162975,0.308801447160972,0,0,0,0.168942440653073,0,0,0,0.138258436151731,0,0.132864840313363,0,0.327609848846413,0,0,0,0,0.516644938982447,0,0.184105950251841,0,0,0,0,0.157265941855896,0,0.169732529954025,0.212574920101683,0,0,0,0.70975570501128,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443568258651136,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0.345701962667338,0.514464028312255,0,0,0.709163045303809,0.111231401892069,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0.392600934460972,9.02192644868794,0,0.102662806856247,0,0.485710993059139,0,0.198950775161368,0,0,0,0,3.78153374728929,0.437119121007915,0,0,0,0,0,0,0,0.187967835959707,0.45120521581504,0,0,0,0,0,0.458729283404541,0,0.157771562193185,0,0,1.0580536810308,0,0,0,0,0,0.126698501011437,0.305966489225945,0.801652215796681,0,0.250707539292375,0,0.267964130156178,0,0,0,0.23806443146374,0.452122368852043,0.186224142887574,0,0,0,0,0,0.26940821205835,0.215166616178029,0,0.162806537221949,0.853818767021724,0,0,0,0.122241444182866,0,0,0.402547587182052,0.320568492303233 | ||
|short_description=p2@LIME1 | |short_description=p2@LIME1 | ||
}} | }} |
Latest revision as of 14:08, 17 September 2015
Short description: | p2@LIME1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LIME1_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000494776_5end |
EntrezGene: | LIME1 |
HGNC: | 26016 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 3.29e-17 | 12 |
mature alpha-beta T cell | 4.28e-10 | 18 |
alpha-beta T cell | 4.28e-10 | 18 |
immature T cell | 4.28e-10 | 18 |
mature T cell | 4.28e-10 | 18 |
immature alpha-beta T cell | 4.28e-10 | 18 |
T cell | 5.21e-07 | 25 |
pro-T cell | 5.21e-07 | 25 |
endodermal cell | 8.43e-07 | 58 |
fat cell | 9.78e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
liver | 2.55e-17 | 19 |
digestive gland | 2.55e-17 | 19 |
liver bud | 2.55e-17 | 19 |
epithelial sac | 1.05e-15 | 25 |
sac | 5.07e-15 | 26 |
hepatic diverticulum | 1.01e-14 | 22 |
liver primordium | 1.01e-14 | 22 |
digestive tract diverticulum | 5.26e-14 | 23 |
epithelium of foregut-midgut junction | 9.54e-13 | 25 |
anatomical boundary | 9.54e-13 | 25 |
hepatobiliary system | 9.54e-13 | 25 |
foregut-midgut junction | 9.54e-13 | 25 |
septum transversum | 9.54e-13 | 25 |
gut epithelium | 1.11e-10 | 54 |
endocrine gland | 1.42e-10 | 35 |
exocrine gland | 5.99e-10 | 31 |
exocrine system | 5.99e-10 | 31 |
endocrine system | 8.65e-08 | 45 |
intestine | 1.24e-07 | 17 |
abdomen element | 1.28e-07 | 54 |
abdominal segment element | 1.28e-07 | 54 |
subdivision of digestive tract | 2.35e-07 | 118 |
endo-epithelium | 3.43e-07 | 82 |