FFCP PHASE1:Hg19::chr19:18899504..18899530,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:18899504..18899530,- | |||
|coexpression_cluster_id=C240 | |||
|description=CAGE_peak_at_chr19:18899504..18899530,- | |description=CAGE_peak_at_chr19:18899504..18899530,- | ||
|id=chr19:18899504..18899530,- | |id=chr19:18899504..18899530,- | ||
|ontology_enrichment_celltype=CL:0000136!4.10e-25!15;CL:0000153!8.50e-16!9;CL:0000447!8.50e-16!9;CL:0002334!1.22e-15!12;CL:0000057!1.31e-15!75;CL:0002620!4.95e-14!23;CL:0002580!3.18e-13!3;CL:0000135!4.38e-13!3;CL:0000386!4.38e-13!3;CL:0000388!4.38e-13!3;CL:0002615!4.75e-13!3;CL:0002579!1.96e-12!3;CL:0000667!3.77e-11!6;CL:0000058!3.77e-11!6;CL:0000138!3.77e-11!6;CL:0000499!1.28e-10!27;CL:0000327!6.69e-10!14;CL:0002617!1.53e-09!2;CL:0000325!2.13e-08!39;CL:0000055!4.19e-08!180;CL:0000134!1.07e-07!358;CL:0002320!2.20e-07!365 | |ontology_enrichment_celltype=CL:0000136!4.10e-25!15;CL:0000153!8.50e-16!9;CL:0000447!8.50e-16!9;CL:0002334!1.22e-15!12;CL:0000057!1.31e-15!75;CL:0002620!4.95e-14!23;CL:0002580!3.18e-13!3;CL:0000135!4.38e-13!3;CL:0000386!4.38e-13!3;CL:0000388!4.38e-13!3;CL:0002615!4.75e-13!3;CL:0002579!1.96e-12!3;CL:0000667!3.77e-11!6;CL:0000058!3.77e-11!6;CL:0000138!3.77e-11!6;CL:0000499!1.28e-10!27;CL:0000327!6.69e-10!14;CL:0002617!1.53e-09!2;CL:0000325!2.13e-08!39;CL:0000055!4.19e-08!180;CL:0000134!1.07e-07!358;CL:0002320!2.20e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0000136;1.40e-33;13!CL:0002334;1.93e-27;12!CL:0000153;2.70e-27;9!CL:0000447;2.70e-27;9!CL:0002580;4.68e-22;3!CL:0000135;7.15e-22;3!CL:0000388;7.15e-22;3!CL:0002615;9.15e-22;3!CL:0002579;8.18e-21;3!CL:0000138;6.26e-19;6!CL:0000499;8.81e-19;28!CL:0000327;3.36e-16;15!CL:0002617;1.38e-15;2!CL:0000214;4.41e-10;3!CL:0002521;5.06e-10;3!CL:0002616;1.31e-08;1!CL:0002581;3.21e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,5.48e-29,15;CL:0002334,2.22e-27,12;CL:0000153,2.41e-27,9;CL:0000447,2.41e-27,9;CL:0002580,4.36e-22,3;CL:0000135,7.67e-22,3;CL:0000388,7.67e-22,3;CL:0002615,8.83e-22,3;CL:0002579,1.08e-20,3;CL:0000058,6.56e-19,6;CL:0000138,6.56e-19,6;CL:0000499,8.53e-19,28;CL:0000327,3.14e-16,15;CL:0002617,1.33e-15,2;CL:0000057,8.70e-13,76;CL:0000134,1.22e-10,354;CL:0002320,2.44e-10,361;CL:0000214,3.75e-10,3;CL:0002521,4.95e-10,3;CL:0000219,2.80e-09,386;CL:0002616,1.31e-08,1;CL:0002581,3.33e-08,1;CL:0000048,5.60e-08,427;CL:0000723,8.47e-08,433;CL:0000034,1.45e-07,441 | |||
|ontology_enrichment_development_v019=UBERON:0004874;5.62e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003688!9.98e-24!6;UBERON:0002358!9.98e-24!6;UBERON:0003684!9.98e-24!6;UBERON:0001178!9.98e-24!6;UBERON:0004457!2.98e-20!12;UBERON:0000042!2.98e-20!12;UBERON:0000043!4.38e-13!3;UBERON:0000310!2.48e-10!10;UBERON:0001013!1.38e-09!14;UBERON:0001443!2.34e-09!11;UBERON:0002199!2.40e-09!45;UBERON:0002416!2.40e-09!45;UBERON:0005406!2.92e-09!2;UBERON:0002384!1.34e-07!375;UBERON:0002097!2.75e-07!40 | |ontology_enrichment_uberon=UBERON:0003688!9.98e-24!6;UBERON:0002358!9.98e-24!6;UBERON:0003684!9.98e-24!6;UBERON:0001178!9.98e-24!6;UBERON:0004457!2.98e-20!12;UBERON:0000042!2.98e-20!12;UBERON:0000043!4.38e-13!3;UBERON:0000310!2.48e-10!10;UBERON:0001013!1.38e-09!14;UBERON:0001443!2.34e-09!11;UBERON:0002199!2.40e-09!45;UBERON:0002416!2.40e-09!45;UBERON:0005406!2.92e-09!2;UBERON:0002384!1.34e-07!375;UBERON:0002097!2.75e-07!40 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;1.35e-47;9!UBERON:0000042;1.35e-47;9!UBERON:0003688;9.17e-41;6!UBERON:0002358;9.17e-41;6!UBERON:0003684;9.17e-41;6!UBERON:0001178;9.17e-41;6!UBERON:0007846;7.15e-22;3!UBERON:0000043;7.15e-22;3!UBERON:0007845;7.15e-22;3!UBERON:0000310;7.32e-18;10!UBERON:0001443;3.19e-16;11!UBERON:0005406;4.02e-15;2!UBERON:0006915;4.41e-10;3!UBERON:0007616;4.41e-10;3!UBERON:0002217;4.41e-10;3!UBERON:0002018;4.41e-10;3!UBERON:0002190;5.06e-10;3!UBERON:0001013;4.22e-08;14!UBERON:0000989;5.62e-08;1!UBERON:0008811;5.62e-08;1!UBERON:0004458;7.15e-07;48 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.17e-40,6;UBERON:0002358,1.17e-40,6;UBERON:0003684,1.17e-40,6;UBERON:0001178,1.17e-40,6;UBERON:0004457,1.87e-35,12;UBERON:0000042,1.87e-35,12;UBERON:0007846,7.67e-22,3;UBERON:0000043,7.67e-22,3;UBERON:0007845,7.67e-22,3;UBERON:0000310,6.95e-18,10;UBERON:0001443,3.04e-16,11;UBERON:0005406,4.16e-15,2;UBERON:0006915,3.75e-10,3;UBERON:0007616,3.75e-10,3;UBERON:0002217,3.75e-10,3;UBERON:0002018,3.75e-10,3;UBERON:0002190,4.95e-10,3;UBERON:0002384,6.28e-10,371;UBERON:0001013,4.22e-08,14;UBERON:0000989,4.41e-08,1;UBERON:0008811,4.41e-08,1;UBERON:0006258,4.41e-08,1;UBERON:0005876,4.41e-08,1;UBERON:0004874,4.41e-08,1;UBERON:0004458,7.29e-08,49 | |||
|phase1_expression=12.3541297903979,27.8330681058278,3.66481450649525,21.0153926541574,6.70441641640932,13.9574163856059,5.06599756336621,0,1.82829939739887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44575660953827,0,12.31195411167,5.5670016293577,14.1124112387764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0.103052529238439,1.28820270022815,0.744467425326359,1.5189869901714,0.389748020644795,0,0.0920498986422993,0,1.42003837006646,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601892199455438,4.5481500811197,0,0,0,0,0,0,0,0,0,0,0,0,5.95458738765064,11.2027240500286,25.2594084989766,1.02511319404561,3.07024349440022,2.0911009748669,4.45254199334973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.75544432952525,1.97576935775941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.837847203816763,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686791410365586,0.673498977531838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,1.98484471355718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0,6.69591032700152,9.70568820125978,7.7872781182282,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 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|phase1_expression=12.3541297903979,27.8330681058278,3.66481450649525,21.0153926541574,6.70441641640932,13.9574163856059,5.06599756336621,0,1.82829939739887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44575660953827,0,12.31195411167,5.5670016293577,14.1124112387764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0.103052529238439,1.28820270022815,0.744467425326359,1.5189869901714,0.389748020644795,0,0.0920498986422993,0,1.42003837006646,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601892199455438,4.5481500811197,0,0,0,0,0,0,0,0,0,0,0,0,5.95458738765064,11.2027240500286,25.2594084989766,1.02511319404561,3.07024349440022,2.0911009748669,4.45254199334973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.75544432952525,1.97576935775941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.837847203816763,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686791410365586,0.673498977531838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,1.98484471355718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0,6.69591032700152,9.70568820125978,7.7872781182282,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr19:18899504..18899530,- | |short_description=p@chr19:18899504..18899530,- | ||
}} | }} |
Latest revision as of 05:21, 26 July 2015
Short description: | p@chr19:18899504..18899530, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:18899504..18899530, - |
Coexpression cluster: | C240_Adipocyte_Preadipocyte_Osteoblast_Chondrocyte_tenocyte_Synoviocyte_mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 5.48e-29 | 15 |
preadipocyte | 2.22e-27 | 12 |
GAG secreting cell | 2.41e-27 | 9 |
carbohydrate secreting cell | 2.41e-27 | 9 |
preadipocyte of the breast | 4.36e-22 | 3 |
fibrocyte | 7.67e-22 | 3 |
tendon cell | 7.67e-22 | 3 |
adipocyte of omentum tissue | 8.83e-22 | 3 |
omentum preadipocyte | 1.08e-20 | 3 |
chondroblast | 6.56e-19 | 6 |
chondrocyte | 6.56e-19 | 6 |
stromal cell | 8.53e-19 | 28 |
extracellular matrix secreting cell | 3.14e-16 | 15 |
adipocyte of breast | 1.33e-15 | 2 |
fibroblast | 8.70e-13 | 76 |
mesenchymal cell | 1.22e-10 | 354 |
connective tissue cell | 2.44e-10 | 361 |
synovial cell | 3.75e-10 | 3 |
subcutaneous fat cell | 4.95e-10 | 3 |
motile cell | 2.80e-09 | 386 |
perirenal adipocyte cell | 1.31e-08 | 1 |
perirenal preadipocyte | 3.33e-08 | 1 |
multi fate stem cell | 5.60e-08 | 427 |
somatic stem cell | 8.47e-08 | 433 |
stem cell | 1.45e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.17e-40 | 6 |
peritoneum | 1.17e-40 | 6 |
abdominal cavity | 1.17e-40 | 6 |
visceral peritoneum | 1.17e-40 | 6 |
cavity lining | 1.87e-35 | 12 |
serous membrane | 1.87e-35 | 12 |
dense regular connective tissue | 7.67e-22 | 3 |
tendon | 7.67e-22 | 3 |
regular connective tissue | 7.67e-22 | 3 |
breast | 6.95e-18 | 10 |
chest | 3.04e-16 | 11 |
perirenal fat | 4.16e-15 | 2 |
stratified squamous epithelium | 3.75e-10 | 3 |
layer of synovial tissue | 3.75e-10 | 3 |
synovial joint | 3.75e-10 | 3 |
synovial membrane of synovial joint | 3.75e-10 | 3 |
subcutaneous adipose tissue | 4.95e-10 | 3 |
connective tissue | 6.28e-10 | 371 |
adipose tissue | 4.22e-08 | 14 |
penis | 4.41e-08 | 1 |
intromittent organ | 4.41e-08 | 1 |
lateral plate mesenchyme | 4.41e-08 | 1 |
undifferentiated genital tubercle | 4.41e-08 | 1 |
somatopleure | 4.41e-08 | 1 |
body cavity or lining | 7.29e-08 | 49 |