FFCP PHASE1:Hg19::chr19:19971996..19972016,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:19971996..19972016,- | |||
|description=CAGE_peak_at_chr19:19971996..19972016,- | |description=CAGE_peak_at_chr19:19971996..19972016,- | ||
|id=chr19:19971996..19972016,- | |id=chr19:19971996..19972016,- | ||
|ontology_enrichment_celltype=CL:0000791!1.88e-15!18;CL:0000789!1.88e-15!18;CL:0002420!1.88e-15!18;CL:0002419!1.88e-15!18;CL:0000790!1.88e-15!18;CL:0000838!2.20e-15!52;CL:0000542!7.05e-15!53;CL:0000051!7.05e-15!53;CL:0000625!4.78e-11!11;CL:0000084!5.67e-11!25;CL:0000827!5.67e-11!25;CL:0000236!5.38e-08!14;CL:0000624!2.75e-07!6;CL:0000738!7.37e-07!140;CL:0002322!8.63e-07!5 | |ontology_enrichment_celltype=CL:0000791!1.88e-15!18;CL:0000789!1.88e-15!18;CL:0002420!1.88e-15!18;CL:0002419!1.88e-15!18;CL:0000790!1.88e-15!18;CL:0000838!2.20e-15!52;CL:0000542!7.05e-15!53;CL:0000051!7.05e-15!53;CL:0000625!4.78e-11!11;CL:0000084!5.67e-11!25;CL:0000827!5.67e-11!25;CL:0000236!5.38e-08!14;CL:0000624!2.75e-07!6;CL:0000738!7.37e-07!140;CL:0002322!8.63e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.14e-15;18!CL:0000789;3.14e-15;18!CL:0002419;3.14e-15;18!CL:0000236;2.48e-14;13!CL:0000542;5.74e-13;53!CL:0002322;4.31e-12;5!CL:0000084;5.37e-12;25!CL:0000624;1.14e-09;6!CL:0000625;1.01e-08;11!CL:0000945;1.34e-08;24!CL:0000898;5.74e-08;3!CL:0000784;7.58e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,8.29e-22,52;CL:0000542,2.94e-21,53;CL:0000051,2.94e-21,53;CL:0000791,1.33e-15,18;CL:0000789,1.33e-15,18;CL:0002420,1.33e-15,18;CL:0002419,1.33e-15,18;CL:0000790,1.33e-15,18;CL:0000236,2.81e-13,14;CL:0000084,2.38e-12,25;CL:0000827,2.38e-12,25;CL:0002322,6.99e-12,5;CL:0000738,3.30e-10,136;CL:0000624,9.96e-10,6;CL:0000625,4.99e-09,11;CL:0000945,1.13e-08,24;CL:0000826,1.13e-08,24;CL:0000037,1.25e-08,168;CL:0002031,2.00e-08,120;CL:0002087,3.08e-08,115;CL:0000898,5.20e-08,3;CL:0000988,9.43e-08,177 | |||
|ontology_enrichment_development_v019=CL:0000790;3.14e-15;18!CL:0000051;5.74e-13;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.68e-08;15!UBERON:0000179;6.68e-08;15!UBERON:0000463;6.68e-08;15!UBERON:0000473;2.58e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,9.30e-08,15;UBERON:0000179,9.30e-08,15;UBERON:0000463,9.30e-08,15;UBERON:0000473,4.58e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,2.18441372130172,0,0,0,0,0,0,0,0.492484232307152,0,0,0,0,0.376627918784408,0,0,0,0.393364276848904,0.767658796194425,0.154816123316076,0,0,0,0,0,3.22960483268332,0,0.401088894940283,0.434021741431704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.36910889009705,8.89509253863555,3.84057200309856,6.4063357925762,5.74752439954483,2.64417949113945,3.81621501814146,2.84606484554724,5.28513470433845,0.764546456250458,3.96513985737078,1.12101712596307,0,1.37696839079683,2.75107533924415,0.411202997999018,0.334372990781356,5.86660079940463,1.89379122293893,3.89653456815823,0.111410456885174,1.47302953737419,0.443067789167242,0.541607727530031,0,0,0,0.276350017785848,0.579606171470105,3.70716407905151,3.74557159325598,3.1360657141493,0.113309342697566,4.98186641682498,3.09264700934367,2.02415753615602,1.91139248594458,0.651083453856419,0.950452044448374,1.80690142893327,2.30375900077953,2.49861453104692,1.4206635122641,0.821127996921047,0.403213486449465,1.60464117470104,1.88271725047639,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.196468613246569,0,0,0,0,0,1.19245312152671,1.14398982156026,1.48583000531826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0.10075209822764,0,0,0,0,3.41526377162867,3.71083351300159,3.71820617182459,1.0366105501537,3.02785021050754,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,1.48141512253647,0,0,0,1.27523445472584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65862492432618,2.73827911492227,1.51490920111656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0.788123040807709,2.37190332345469,1.92514554419623,0,0,0,1.50764638800914,0.637938751653163,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,1.6541442089831,0.431428401637234,1.28073069364133,1.81876542867756,0,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0.902399225814824,0.462092022626489,0,1.46139224653261,0.105551628892876,0,0,0,0,0,0.501689773854853,0.764628819135115,1.66215201785745,0.447749509444357,0,0,0,0,0.325378394664303,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0.670302275535787,0,0.0941438007767792,0,0,0,0,1.52234282769651,0,1.13929437434833,0.952927101831156,1.23408681925858,0,1.08006287447623,2.37937552888281,0,0,0,0,0,1.84968792705877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.71623345421307,2.07875276582847,0.921482106297696,0,0.140669416410513,0,0,0,0,1.65770349318689,0.251932747854276,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0.885741385813839,1.20596438625408,0,0.110579259931225,0,0.219385397153973,0,0,0.230850775511391,0,0.23056390438806,0,0,0.638002319463839,0,0,0,0,0,1.1279783030859,0.19606253431774,0.671286347903371,0.189753732724185,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0.234264445725339,0,0,0,0,0,2.75465485467441,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0.343972064943233,0,0,0,0,0,0.677942222341597,0,0.19871461170299,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,1.27746588066972,0,0,0,0,0,0,0,0,0.335917362433631,0,0,0.0787831823072236,0.0824158583811665,0.0674035438541849,0,0,0,0,1.44677833618517,13.4788647865289,10.8014487887588,0,0.77380195455795,0.0607495566580247,0,0.236417121897595,1.15400093896996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0,0,0,0,0.471612915298998,0.414239055347196,0.496166021811951,0,13.8843562154221,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,3.27834434064817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.08191728651685,0,0,0,0.231522474323834,7.58683783970049,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0.327130788511688,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,6.77099756790486,0,0,0,0,0,5.04715168008021,0,0,0,0.513833800771676,0,0,0,2.7727886584389,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.150420656698515,0.20170506870352,0,0,0,0,0,0,0,0,2.7348740450911,0,0,0,0,0,3.02655349996942,0,0,0,0,0,0,0,0,0,0.078493092850514,3.29942738823604,0,0.913158720509496,0,0,0.357382720883282,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0.294450700845729,0,0,0,0,0.485710993059139,0.467878926924211,0,0,0,0,0,0.0771741581079447,0.437119121007915,0.470317296361523,0.245148321753905,0,0,0,0,0,0.469919589899268,0.966868319603658,0.0999411559249289,0,0,0,0,0.917458566809082,0,0,0,1.74540276136151,0,0,0,0,0,0,0,6.62927393322881,3.20660886318673,7.62727666139213,1.0028301571695,0.303114792872958,1.07185652062471,0,0.20686599172379,0,0.23806443146374,0.387533459016037,1.30356900021302,0.112131862580613,0.190941474834495,0,0.217716747896961,0,1.14498490124799,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,2.18441372130172,0,0,0,0,0,0,0,0.492484232307152,0,0,0,0,0.376627918784408,0,0,0,0.393364276848904,0.767658796194425,0.154816123316076,0,0,0,0,0,3.22960483268332,0,0.401088894940283,0.434021741431704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.36910889009705,8.89509253863555,3.84057200309856,6.4063357925762,5.74752439954483,2.64417949113945,3.81621501814146,2.84606484554724,5.28513470433845,0.764546456250458,3.96513985737078,1.12101712596307,0,1.37696839079683,2.75107533924415,0.411202997999018,0.334372990781356,5.86660079940463,1.89379122293893,3.89653456815823,0.111410456885174,1.47302953737419,0.443067789167242,0.541607727530031,0,0,0,0.276350017785848,0.579606171470105,3.70716407905151,3.74557159325598,3.1360657141493,0.113309342697566,4.98186641682498,3.09264700934367,2.02415753615602,1.91139248594458,0.651083453856419,0.950452044448374,1.80690142893327,2.30375900077953,2.49861453104692,1.4206635122641,0.821127996921047,0.403213486449465,1.60464117470104,1.88271725047639,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.196468613246569,0,0,0,0,0,1.19245312152671,1.14398982156026,1.48583000531826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0.10075209822764,0,0,0,0,3.41526377162867,3.71083351300159,3.71820617182459,1.0366105501537,3.02785021050754,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,1.48141512253647,0,0,0,1.27523445472584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65862492432618,2.73827911492227,1.51490920111656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0.788123040807709,2.37190332345469,1.92514554419623,0,0,0,1.50764638800914,0.637938751653163,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,1.6541442089831,0.431428401637234,1.28073069364133,1.81876542867756,0,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0.902399225814824,0.462092022626489,0,1.46139224653261,0.105551628892876,0,0,0,0,0,0.501689773854853,0.764628819135115,1.66215201785745,0.447749509444357,0,0,0,0,0.325378394664303,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0.670302275535787,0,0.0941438007767792,0,0,0,0,1.52234282769651,0,1.13929437434833,0.952927101831156,1.23408681925858,0,1.08006287447623,2.37937552888281,0,0,0,0,0,1.84968792705877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.71623345421307,2.07875276582847,0.921482106297696,0,0.140669416410513,0,0,0,0,1.65770349318689,0.251932747854276,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0.885741385813839,1.20596438625408,0,0.110579259931225,0,0.219385397153973,0,0,0.230850775511391,0,0.23056390438806,0,0,0.638002319463839,0,0,0,0,0,1.1279783030859,0.19606253431774,0.671286347903371,0.189753732724185,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0.234264445725339,0,0,0,0,0,2.75465485467441,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0.343972064943233,0,0,0,0,0,0.677942222341597,0,0.19871461170299,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,1.27746588066972,0,0,0,0,0,0,0,0,0.335917362433631,0,0,0.0787831823072236,0.0824158583811665,0.0674035438541849,0,0,0,0,1.44677833618517,13.4788647865289,10.8014487887588,0,0.77380195455795,0.0607495566580247,0,0.236417121897595,1.15400093896996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0,0,0,0,0.471612915298998,0.414239055347196,0.496166021811951,0,13.8843562154221,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,3.27834434064817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.08191728651685,0,0,0,0.231522474323834,7.58683783970049,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0.327130788511688,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,6.77099756790486,0,0,0,0,0,5.04715168008021,0,0,0,0.513833800771676,0,0,0,2.7727886584389,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.150420656698515,0.20170506870352,0,0,0,0,0,0,0,0,2.7348740450911,0,0,0,0,0,3.02655349996942,0,0,0,0,0,0,0,0,0,0.078493092850514,3.29942738823604,0,0.913158720509496,0,0,0.357382720883282,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0.294450700845729,0,0,0,0,0.485710993059139,0.467878926924211,0,0,0,0,0,0.0771741581079447,0.437119121007915,0.470317296361523,0.245148321753905,0,0,0,0,0,0.469919589899268,0.966868319603658,0.0999411559249289,0,0,0,0,0.917458566809082,0,0,0,1.74540276136151,0,0,0,0,0,0,0,6.62927393322881,3.20660886318673,7.62727666139213,1.0028301571695,0.303114792872958,1.07185652062471,0,0.20686599172379,0,0.23806443146374,0.387533459016037,1.30356900021302,0.112131862580613,0.190941474834495,0,0.217716747896961,0,1.14498490124799,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p@chr19:19971996..19972016,- | |short_description=p@chr19:19971996..19972016,- | ||
}} | }} |
Latest revision as of 05:34, 26 July 2015
Short description: | p@chr19:19971996..19972016, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:19971996..19972016, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 8.29e-22 | 52 |
lymphocyte | 2.94e-21 | 53 |
common lymphoid progenitor | 2.94e-21 | 53 |
mature alpha-beta T cell | 1.33e-15 | 18 |
alpha-beta T cell | 1.33e-15 | 18 |
immature T cell | 1.33e-15 | 18 |
mature T cell | 1.33e-15 | 18 |
immature alpha-beta T cell | 1.33e-15 | 18 |
B cell | 2.81e-13 | 14 |
T cell | 2.38e-12 | 25 |
pro-T cell | 2.38e-12 | 25 |
embryonic stem cell | 6.99e-12 | 5 |
leukocyte | 3.30e-10 | 136 |
CD4-positive, alpha-beta T cell | 9.96e-10 | 6 |
CD8-positive, alpha-beta T cell | 4.99e-09 | 11 |
lymphocyte of B lineage | 1.13e-08 | 24 |
pro-B cell | 1.13e-08 | 24 |
hematopoietic stem cell | 1.25e-08 | 168 |
hematopoietic lineage restricted progenitor cell | 2.00e-08 | 120 |
nongranular leukocyte | 3.08e-08 | 115 |
naive T cell | 5.20e-08 | 3 |
hematopoietic cell | 9.43e-08 | 177 |
Ontology term | p-value | n |
---|---|---|
blood | 9.30e-08 | 15 |
haemolymphatic fluid | 9.30e-08 | 15 |
organism substance | 9.30e-08 | 15 |
testis | 4.58e-07 | 8 |