FFCP PHASE1:Hg19::chr12:2800274..2800303,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr12:2800274..2800303,-
|short_description=p2@CACNA1C-AS1
|description=CAGE_peak_2_at_CACNA1C-AS1_5end
|association_with_transcript=0bp_to_ENST00000501371,uc00...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=40119 | |HGNC=40119 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000501371,uc001qkx.1_5end | |||
|cluster_id=chr12:2800274..2800303,- | |||
|coexpression_cluster_id=C3275 | |||
|description=CAGE_peak_2_at_CACNA1C-AS1_5end | |||
|id=chr12:2800274..2800303,- | |||
|ontology_enrichment_celltype=CL:0000791!1.43e-20!18;CL:0000789!1.43e-20!18;CL:0002420!1.43e-20!18;CL:0002419!1.43e-20!18;CL:0000790!1.43e-20!18;CL:0000084!7.53e-19!25;CL:0000827!7.53e-19!25;CL:0000625!2.57e-15!11;CL:0000037!4.50e-12!172;CL:0000566!4.50e-12!172;CL:0000988!9.47e-12!182;CL:0000542!3.05e-11!53;CL:0000051!3.05e-11!53;CL:0000838!1.18e-10!52;CL:0002032!3.80e-09!165;CL:0000837!3.80e-09!165;CL:0000624!1.97e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000625;4.66e-17;11!CL:0000791;1.48e-16;18!CL:0000789;1.48e-16;18!CL:0002419;1.48e-16;18!CL:0000084;2.39e-14;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000625,5.11e-17,11;CL:0000791,1.83e-16,18;CL:0000789,1.83e-16,18;CL:0002420,1.83e-16,18;CL:0002419,1.83e-16,18;CL:0000790,1.83e-16,18;CL:0000084,2.81e-14,25;CL:0000827,2.81e-14,25;CL:0000037,3.09e-11,168;CL:0000988,2.36e-10,177;CL:0002032,6.37e-08,161;CL:0000837,6.37e-08,161;CL:0000838,3.59e-07,52;CL:0000542,5.36e-07,53;CL:0000051,5.36e-07,53 | |||
|ontology_enrichment_development_v019=CL:0000790;1.48e-16;18 | |||
|ontology_enrichment_disease=DOID:1240!4.16e-08!39;DOID:8692!8.23e-08!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;6.68e-14;31!DOID:1240;1.48e-10;39!DOID:2531;1.10e-09;51!DOID:0060083;1.10e-09;51 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,3.58e-14,31;DOID:1240,5.09e-13,39;DOID:2531,3.62e-11,51;DOID:0060083,3.62e-11,51 | |||
|ontology_enrichment_uberon=UBERON:0000178!1.51e-07!15;UBERON:0000179!1.51e-07!15;UBERON:0000463!1.51e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;6.98e-10;2!UBERON:0005058;6.98e-10;2!UBERON:0009113;6.98e-10;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.76e-10,4;UBERON:0005058,4.76e-10,4;UBERON:0009113,4.76e-10,4;UBERON:0003295,4.76e-10,4;UBERON:0005562,4.76e-10,4;UBERON:0003351,7.91e-07,6 | |||
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| ||
|short_description=p2@CACNA1C-AS1 | |||
}} | }} |
Latest revision as of 00:33, 18 September 2015
Short description: | p2@CACNA1C-AS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CACNA1C-AS1_5end |
Coexpression cluster: | C3275_Hodgkin_acute_thymus_CD34_CD133_granulocyte_CD4 |
Association with transcript: | 0bp_to_ENST00000501371, uc001qkx.1_5end |
EntrezGene: | NA |
HGNC: | 40119 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 5.11e-17 | 11 |
mature alpha-beta T cell | 1.83e-16 | 18 |
alpha-beta T cell | 1.83e-16 | 18 |
immature T cell | 1.83e-16 | 18 |
mature T cell | 1.83e-16 | 18 |
immature alpha-beta T cell | 1.83e-16 | 18 |
T cell | 2.81e-14 | 25 |
pro-T cell | 2.81e-14 | 25 |
hematopoietic stem cell | 3.09e-11 | 168 |
hematopoietic cell | 2.36e-10 | 177 |
hematopoietic oligopotent progenitor cell | 6.37e-08 | 161 |
hematopoietic multipotent progenitor cell | 6.37e-08 | 161 |
lymphoid lineage restricted progenitor cell | 3.59e-07 | 52 |
lymphocyte | 5.36e-07 | 53 |
common lymphoid progenitor | 5.36e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
thymus | 4.76e-10 | 4 |
hemolymphoid system gland | 4.76e-10 | 4 |
thymic region | 4.76e-10 | 4 |
pharyngeal gland | 4.76e-10 | 4 |
thymus primordium | 4.76e-10 | 4 |
pharyngeal epithelium | 7.91e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 3.58e-14 | 31 |
leukemia | 5.09e-13 | 39 |
hematologic cancer | 3.62e-11 | 51 |
immune system cancer | 3.62e-11 | 51 |