FFCP PHASE1:Hg19::chr12:52881151..52881162,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr12:52881151..52881162,-
|short_description=p@chr12:52881151..52881162,-
|description=CAGE_peak_at_chr12:52881151..52881162,-
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:52881151..52881162,- | |||
|coexpression_cluster_id=C594 | |||
|description=CAGE_peak_at_chr12:52881151..52881162,- | |||
|id=chr12:52881151..52881162,- | |||
|ontology_enrichment_celltype=CL:0002076!1.18e-33!43;CL:0000223!8.61e-25!59;CL:0002368!1.96e-21!13;CL:0000066!6.84e-19!254;CL:0002251!2.48e-17!21;CL:0002159!9.77e-14!13;CL:0002202!2.13e-11!9;CL:0002632!2.13e-11!9;CL:0002621!3.01e-10!3;CL:0000068!9.48e-10!3;CL:0000069!9.48e-10!3;CL:0000307!9.48e-10!3;CL:0000377!9.48e-10!3;CL:0002541!1.27e-09!3;CL:0002328!2.04e-09!3;CL:0000622!2.34e-09!5;CL:0002623!3.24e-09!3;CL:0000240!1.20e-08!6;CL:0000311!1.20e-08!6;CL:0000079!1.20e-08!6;CL:0000237!1.20e-08!6;CL:0000036!1.20e-08!6;CL:0000357!1.20e-08!6;CL:0000114!1.20e-08!6;CL:0000076!6.02e-08!62;CL:0000154!8.41e-08!6;CL:0002327!1.24e-07!4;CL:0000575!3.10e-07!2;CL:0002077!3.10e-07!33;CL:0000244!4.13e-07!4;CL:0000731!4.13e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002368;1.25e-24;13!CL:0002076;1.23e-21;42!CL:0002621;1.02e-16;3!CL:0000307;2.88e-16;3!CL:0000240;1.71e-14;6!CL:0000311;1.71e-14;6!CL:0000079;1.71e-14;6!CL:0000237;1.71e-14;6!CL:0002327;1.94e-12;4!CL:0000575;3.22e-11;2!CL:0000312;2.34e-10;5!CL:0002202;2.02e-09;9!CL:0002632;2.02e-09;9!CL:0002159;2.75e-09;14!CL:0002231;2.07e-08;3!CL:0002541;3.55e-08;3!CL:0000349;3.95e-07;19!CL:0002252;5.74e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,4.72e-25,42;CL:0002368,3.00e-24,13;CL:0000223,2.98e-17,58;CL:0002621,8.04e-17,3;CL:0000068,6.02e-16,3;CL:0000069,6.02e-16,3;CL:0000307,6.02e-16,3;CL:0000377,6.02e-16,3;CL:0000240,1.71e-14,6;CL:0000311,1.71e-14,6;CL:0000079,1.71e-14,6;CL:0000237,1.71e-14,6;CL:0000036,1.71e-14,6;CL:0000357,1.71e-14,6;CL:0000114,1.71e-14,6;CL:0002327,1.66e-12,4;CL:0000575,1.54e-11,2;CL:0000312,2.70e-10,5;CL:0000066,1.51e-09,253;CL:0002159,2.32e-09,14;CL:0002202,3.06e-09,9;CL:0002632,3.06e-09,9;CL:0002231,2.15e-08,3;CL:0002541,4.10e-08,3;CL:0000349,4.20e-07,19;CL:0002252,5.43e-07,1;CL:0002077,8.79e-07,34 | |||
|ontology_enrichment_development_v019=CL:0000377;2.88e-16;3!CL:0000357;1.71e-14;6!CL:0000114;1.71e-14;6!CL:0000223;3.40e-11;58!UBERON:0009143;9.47e-07;1 | |||
|ontology_enrichment_disease=DOID:1749!5.34e-14!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000166!2.77e-17!21;UBERON:0001004!1.70e-15!72;UBERON:0000165!1.29e-14!28;UBERON:0000930!1.29e-14!28;UBERON:0000161!3.24e-13!35;UBERON:0004119!4.19e-13!169;UBERON:0000925!4.19e-13!169;UBERON:0006595!4.19e-13!169;UBERON:0005631!8.23e-13!14;UBERON:0000158!8.23e-13!14;UBERON:0003124!1.20e-10!7;UBERON:0001949!3.01e-10!3;UBERON:0001444!3.79e-10!48;UBERON:0000476!1.27e-09!3;UBERON:0000920!1.27e-09!3;UBERON:0003102!1.60e-09!95;UBERON:0004815!2.04e-09!3;UBERON:0002031!2.04e-09!3;UBERON:0007196!2.58e-09!14;UBERON:0001558!2.58e-09!14;UBERON:0003729!6.21e-09!5;UBERON:0000065!9.71e-08!53;UBERON:0001911!1.24e-07!4;UBERON:0005333!1.24e-07!4;UBERON:0008425!1.24e-07!4;UBERON:0005311!1.24e-07!4;UBERON:0002185!3.71e-07!4;UBERON:0000478!7.16e-07!24;UBERON:0003126!7.50e-07!7;UBERON:0001005!7.50e-07!7;UBERON:0001007!8.94e-07!155;UBERON:0001555!8.94e-07!155;UBERON:0007026!8.94e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;1.02e-16;3!UBERON:0001911;1.94e-12;4!UBERON:0005631;4.51e-09;10!UBERON:0000158;4.51e-09;10!UBERON:0001043;2.57e-08;3!UBERON:0003124;3.55e-08;3!UBERON:0000920;3.55e-08;3!UBERON:0001723;3.68e-08;3!UBERON:0001033;3.68e-08;3!UBERON:0003929;1.96e-07;7!UBERON:0000486;2.51e-07;12!UBERON:0003126;3.01e-07;7!UBERON:0001005;3.01e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,8.04e-17,3;UBERON:0001911,1.66e-12,4;UBERON:0005333,1.66e-12,4;UBERON:0008425,1.66e-12,4;UBERON:0005311,1.66e-12,4;UBERON:0005631,9.49e-10,14;UBERON:0000158,9.49e-10,14;UBERON:0001004,2.62e-09,74;UBERON:0004119,8.06e-09,160;UBERON:0000925,8.06e-09,160;UBERON:0006595,8.06e-09,160;UBERON:0001043,2.67e-08,3;UBERON:0009143,2.67e-08,3;UBERON:0001723,3.55e-08,3;UBERON:0001033,3.55e-08,3;UBERON:0010056,3.55e-08,3;UBERON:0000920,4.10e-08,3;UBERON:0000065,7.43e-08,54;UBERON:0003102,1.19e-07,99;UBERON:0003124,1.39e-07,7;UBERON:0003126,4.08e-07,7;UBERON:0001005,4.08e-07,7;UBERON:0003729,9.78e-07,13 | |||
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| ||
|short_description=p@chr12:52881151..52881162,- | |||
}} | }} |
Latest revision as of 09:32, 24 July 2015
Short description: | p@chr12:52881151..52881162, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52881151..52881162, - |
Coexpression cluster: | C594_Keratinocyte_Placental_amniotic_Esophageal_tongue_Corneal_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 4.72e-25 | 42 |
respiratory epithelial cell | 3.00e-24 | 13 |
endodermal cell | 2.98e-17 | 58 |
gingival epithelial cell | 8.04e-17 | 3 |
duct epithelial cell | 6.02e-16 | 3 |
branched duct epithelial cell | 6.02e-16 | 3 |
tracheal epithelial cell | 6.02e-16 | 3 |
tracheoblast | 6.02e-16 | 3 |
stratified squamous epithelial cell | 1.71e-14 | 6 |
keratin accumulating cell | 1.71e-14 | 6 |
stratified epithelial cell | 1.71e-14 | 6 |
keratinizing barrier epithelial cell | 1.71e-14 | 6 |
epithelial fate stem cell | 1.71e-14 | 6 |
stratified epithelial stem cell | 1.71e-14 | 6 |
surface ectodermal cell | 1.71e-14 | 6 |
mammary gland epithelial cell | 1.66e-12 | 4 |
corneal epithelial cell | 1.54e-11 | 2 |
keratinocyte | 2.70e-10 | 5 |
epithelial cell | 1.51e-09 | 253 |
general ecto-epithelial cell | 2.32e-09 | 14 |
epithelial cell of tracheobronchial tree | 3.06e-09 | 9 |
epithelial cell of lower respiratory tract | 3.06e-09 | 9 |
epithelial cell of prostate | 2.15e-08 | 3 |
chorionic membrane mesenchymal stem cell | 4.10e-08 | 3 |
extraembryonic cell | 4.20e-07 | 19 |
epithelial cell of esophagus | 5.43e-07 | 1 |
ecto-epithelial cell | 8.79e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 8.04e-17 | 3 |
mammary gland | 1.66e-12 | 4 |
mammary bud | 1.66e-12 | 4 |
mammary ridge | 1.66e-12 | 4 |
mammary placode | 1.66e-12 | 4 |
extraembryonic membrane | 9.49e-10 | 14 |
membranous layer | 9.49e-10 | 14 |
respiratory system | 2.62e-09 | 74 |
endoderm-derived structure | 8.06e-09 | 160 |
endoderm | 8.06e-09 | 160 |
presumptive endoderm | 8.06e-09 | 160 |
esophagus | 2.67e-08 | 3 |
esophageal region | 2.67e-08 | 3 |
tongue | 3.55e-08 | 3 |
gustatory system | 3.55e-08 | 3 |
future tongue | 3.55e-08 | 3 |
egg chorion | 4.10e-08 | 3 |
respiratory tract | 7.43e-08 | 54 |
surface structure | 1.19e-07 | 99 |
chorion | 1.39e-07 | 7 |
trachea | 4.08e-07 | 7 |
respiratory airway | 4.08e-07 | 7 |
mouth mucosa | 9.78e-07 | 13 |