FFCP PHASE1:Hg19::chr12:55808623..55808650,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:55808623..55808650,-
|short_description=p2@PHC1P1
|description=CAGE_peak_2_at_PHC1P1_5end
|association_with_transcript=0bp_to_ENST00000326184_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=34502 | |HGNC=34502 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000326184_5end | |||
|cluster_id=chr12:55808623..55808650,- | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_2_at_PHC1P1_5end | |||
|id=chr12:55808623..55808650,- | |||
|ontology_enrichment_celltype=CL:0002322!4.68e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002322;9.77e-47;5!CL:0002321;1.47e-15;15!CL:0000540;1.48e-14;6!CL:0000404;1.48e-14;6!CL:0000039;3.21e-12;7!CL:0000586;3.21e-12;7!CL:0000148;5.60e-09;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,9.80e-47,5;CL:0000047,1.11e-18,8;CL:0000540,1.38e-14,6;CL:0000031,1.38e-14,6;CL:0000404,1.38e-14,6;CL:0000039,3.03e-12,7;CL:0000586,3.03e-12,7;CL:0000148,5.68e-09,10;CL:0000541,5.68e-09,10;CL:0000133,1.24e-08,59;CL:0000221,6.17e-07,72 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.21e-14;10!UBERON:0005564;1.21e-14;10!CL:0000031;1.48e-14;6!UBERON:0010226;3.00e-10;1!UBERON:0005754;3.00e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.72e-28;8!UBERON:0003135;2.73e-20;11!UBERON:0000991;1.38e-10;21!UBERON:0002084;3.00e-10;1!UBERON:0000998;3.00e-10;1!UBERON:0006868;3.00e-10;1!UBERON:0002082;3.00e-10;1!UBERON:0003101;4.23e-10;22!UBERON:0000079;4.23e-10;22!UBERON:0000922;7.51e-08;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,7.32e-28,8;UBERON:0003135,2.90e-20,11;UBERON:0000991,1.42e-10,21;UBERON:0009196,1.42e-10,21;UBERON:0009117,1.42e-10,21;UBERON:0005564,1.42e-10,21;UBERON:0002084,2.50e-10,1;UBERON:0002082,2.50e-10,1;UBERON:0010226,2.50e-10,1;UBERON:0000998,3.01e-10,1;UBERON:0006868,3.01e-10,1;UBERON:0004176,4.36e-10,22;UBERON:0003101,4.36e-10,22;UBERON:0000079,4.36e-10,22 | |||
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| ||
|short_description=p2@PHC1P1 | |||
}} | }} |
Latest revision as of 07:32, 19 September 2015
Short description: | p2@PHC1P1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PHC1P1_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000326184_5end |
EntrezGene: | NA |
HGNC: | 34502 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 9.80e-47 | 5 |
neuronal stem cell | 1.11e-18 | 8 |
neuron | 1.38e-14 | 6 |
neuroblast | 1.38e-14 | 6 |
electrically signaling cell | 1.38e-14 | 6 |
germ line cell | 3.03e-12 | 7 |
germ cell | 3.03e-12 | 7 |
melanocyte | 5.68e-09 | 10 |
melanoblast | 5.68e-09 | 10 |
neurectodermal cell | 1.24e-08 | 59 |
ectodermal cell | 6.17e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
testis | 7.32e-28 | 8 |
male reproductive organ | 2.90e-20 | 11 |
gonad | 1.42e-10 | 21 |
indifferent external genitalia | 1.42e-10 | 21 |
indifferent gonad | 1.42e-10 | 21 |
gonad primordium | 1.42e-10 | 21 |
heart left ventricle | 2.50e-10 | 1 |
cardiac ventricle | 2.50e-10 | 1 |
future cardiac ventricle | 2.50e-10 | 1 |
seminal vesicle | 3.01e-10 | 1 |
seminal fluid secreting gland | 3.01e-10 | 1 |
external genitalia | 4.36e-10 | 22 |
male organism | 4.36e-10 | 22 |
male reproductive system | 4.36e-10 | 22 |