FFCP PHASE1:Hg19::chr5:3596206..3596210,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79192 | |EntrezGene=79192 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14358 | |HGNC=14358 | ||
|TSSclassifier=strong | |||
|UniProt=P78414 | |UniProt=P78414 | ||
|association_with_transcript=38bp_to_ENST00000302006,NM_024337,uc003jde.2_5end | |association_with_transcript=38bp_to_ENST00000302006,NM_024337,uc003jde.2_5end | ||
|cluster_id=chr5:3596206..3596210,+ | |||
|description=CAGE_peak_4_at_IRX1_5end | |description=CAGE_peak_4_at_IRX1_5end | ||
|id=chr5:3596206..3596210,+ | |id=chr5:3596206..3596210,+ | ||
|ontology_enrichment_celltype=CL:0002620!3.69e-12!23;CL:0000057!1.58e-07!75 | |ontology_enrichment_celltype=CL:0002620!3.69e-12!23;CL:0000057!1.58e-07!75 | ||
|ontology_enrichment_celltype_v019=CL:0002603;7.16e-16;3!CL:0002577;2.19e-15;3!CL:0000622;8.95e-09;5!CL:0000154;2.19e-07;6!CL:0000128;4.89e-07;7!CL:0000126;4.89e-07;7!CL:0000127;4.89e-07;7!CL:0002623;5.21e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002603,6.85e-16,3;CL:0002577,1.50e-15,3;CL:0000622,8.04e-09,5;CL:0000154,2.01e-07,6;CL:0002623,3.95e-07,3;CL:0000128,4.81e-07,7;CL:0000126,4.81e-07,7;CL:0000127,4.81e-07,7;CL:0002453,4.81e-07,7 | |||
|ontology_enrichment_development_v019=UBERON:0006241;2.98e-07;3!UBERON:0003057;2.98e-07;3 | |||
|ontology_enrichment_disease=DOID:17!2.58e-07!5;DOID:450!2.58e-07!5;DOID:66!2.58e-07!5;DOID:423!2.58e-07!5;DOID:0080000!2.58e-07!5;DOID:11722!2.58e-07!5 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004732!7.82e-15!13;UBERON:0003076!8.61e-15!15;UBERON:0003057!8.61e-15!15;UBERON:0004733!1.34e-13!12;UBERON:0002028!1.34e-13!12;UBERON:0007277!1.34e-13!12;UBERON:0002199!3.35e-11!45;UBERON:0002416!3.35e-11!45;UBERON:0004121!1.19e-10!169;UBERON:0002298!2.56e-10!8;UBERON:0000924!4.79e-10!173;UBERON:0006601!4.79e-10!173;UBERON:0002097!5.67e-10!40;UBERON:0002680!7.10e-10!9;UBERON:0001895!7.10e-10!9;UBERON:0010092!7.10e-10!9;UBERON:0001049!2.91e-09!57;UBERON:0005068!2.91e-09!57;UBERON:0006241!2.91e-09!57;UBERON:0007135!2.91e-09!57;UBERON:0003102!2.32e-08!95;UBERON:0001044!2.56e-08!6;UBERON:0003293!2.56e-08!6;UBERON:0003294!2.56e-08!6;UBERON:0010047!2.56e-08!6;UBERON:0000167!2.56e-08!6;UBERON:0001017!1.44e-07!82;UBERON:0005743!1.59e-07!86;UBERON:0000033!2.69e-07!123;UBERON:0000955!3.64e-07!69;UBERON:0006238!3.64e-07!69;UBERON:0000153!4.62e-07!129;UBERON:0007811!4.62e-07!129;UBERON:0002616!6.84e-07!59;UBERON:0005631!9.14e-07!14;UBERON:0000158!9.14e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0004732;1.41e-22;13!UBERON:0004733;4.93e-19;12!UBERON:0002028;4.93e-19;12!UBERON:0002037;1.21e-13;6!UBERON:0002680;1.53e-13;9!UBERON:0001895;1.53e-13;9!UBERON:0001987;1.17e-11;4!UBERON:0002298;1.46e-07;6!UBERON:0001044;2.19e-07;6!UBERON:0003293;2.19e-07;6!UBERON:0003294;2.19e-07;6!UBERON:0010047;2.19e-07;6!UBERON:0003408;2.19e-07;6!UBERON:0000167;2.19e-07;6!UBERON:0001896;2.98e-07;3!UBERON:0002240;2.98e-07;3!UBERON:0005174;2.98e-07;3!UBERON:0005290;2.98e-07;3!UBERON:0001137;2.98e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003076,7.19e-25,15;UBERON:0003057,7.19e-25,15;UBERON:0004732,7.56e-23,13;UBERON:0004733,2.88e-19,12;UBERON:0002028,2.88e-19,12;UBERON:0007277,2.88e-19,12;UBERON:0002680,1.28e-13,9;UBERON:0001895,1.28e-13,9;UBERON:0010092,1.28e-13,9;UBERON:0002037,1.38e-13,6;UBERON:0006215,1.38e-13,6;UBERON:0001987,8.78e-12,4;UBERON:0004340,8.78e-12,4;UBERON:0005631,1.99e-08,14;UBERON:0000158,1.99e-08,14;UBERON:0002298,8.43e-08,6;UBERON:0001896,1.98e-07,3;UBERON:0005290,1.98e-07,3;UBERON:0010096,1.98e-07,3;UBERON:0001044,2.15e-07,6;UBERON:0003293,2.15e-07,6;UBERON:0003294,2.15e-07,6;UBERON:0010047,2.15e-07,6;UBERON:0000167,2.15e-07,6;UBERON:0002240,2.63e-07,3;UBERON:0005174,2.63e-07,3;UBERON:0001137,2.63e-07,3;UBERON:0003124,6.63e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0.783556884599516,0,0,1.52908960491121,0.263766978228454,0,0.331397375727916,0,0,0,0,2.58554221961255,5.10001728110633,7.8363680369522,0,0,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0.12663051166458,0.662045904066094,0.286836620748814,0,0.560677600142307,0,0.24666754841716,0,0,0,0,0,0.234321431833797,0,0,0.298897361103602,0.469737994575059,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,0,0,0.113432183160021,0.89694817844431,1.06778694409284,0.847727604638247,1.20036438433761,0.618315175430633,0.515281080091258,0.18611685633159,1.0126579934476,0.194874010322397,0.252433774244115,1.10459878370759,2.42469085228218,0.710019185033229,0.403008392910561,0.169560592310488,0.386521706326594,0,0,0.487894824518382,0.795178609928912,0.580969714347592,0.932949495138334,0.252320850875628,0.36497735907583,0,1.28648187638577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283550194484773,0.447792613514241,0.290633938513962,0.383382679165211,0,0,0,0.288239906833923,0,0.063497894292169,0,0,0,0.102827492703324,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0.637938751653163,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0.195801157462741,1.02943027143257,0,0,0,3.94065842880137,1.66435439510497,5.74541557326393,0,0,0.280660094433074,0,0,0,0,0.154209693802656,0,0.0821271560138091,0,0,0,0,0,0,0,0.131124414959424,0,0.0770153371044148,0.784349769176855,0,0,0,0,0,0,0,0,0.254876273045038,0,0.671624264166535,0,0,0,0,0,0.206082023295445,0.457847324091717,0.247528499761764,1.14853107599234,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0.382838137483752,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487426979262569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379473173765715,2.0996083214699,0.0962221127255121,0.670302275535787,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,2.81974010175699,0,0.293016358543788,0,0,0,1.43246690842614,0.890894042497916,0.614321404198464,0,0.140669416410513,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0.241192877250816,0,0.663475559587348,2.06883333267483,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.876214728748802,0.802577647298789,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,1.12990370390266,0.137041924646751,0,0.0633107959558787,0,0,0,0,0,0,0,0,0.372757606696298,0,0.135904206073614,0.209205692624666,1.32597682927218,0,0,0.410716136675979,0,0,0,0,0,0,0,0,0,0.53746777989381,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0,0.335434687599266,0.788057072991982,5.87491387111979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775697738169303,0.39669780522807,0,0,0,0.157204305099666,0,0,0,0,0.638341257770182,0,0,0,0.327872630709804,0,0,0,0,1.72022758707021,0.887432412294818,2.79433813236226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,2.08795433572169,0.226705925512272,0,0,0,0.308801447160972,1.97355644620836,1.06013487567529,0,0.337884881306145,0,0.690860683462397,0.607719912354764,0,0,0,0,0,0,0,0,0.426766918776564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,2.18807844327902,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,1.09651553371436,0,0,0,0,0.336283722218824,0,0,0,0,0,1.90315252335129,0,0,0,0,0.471346769748006,0,0,0,0,0.857718530119876,0,0,0,0,0.828864656652147,1.7071847709395,1.38251932362818,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,3.39997695141398,0,0,0.118920090777569,0,0,0,0,0.218559560503957,0,0,0,1.57046773691956,0,2.113278637917,0,0,0,0,0,0,0,0,0.458729283404541,0.143339583151451,1.26217249754548,0,0,0,0,0,0.432626562123789,0,1.74824915141913,0,0.101988829741982,0.26721740526556,3.49200618232411,0,0,0,0,0.103432995861895,0,1.42838658878244,0,0,0,0.0636471582781649,0,0,0.342233301085281,0,0.0717222053926763,2.66128285236811,0,0,0,0,2.34640942403454,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0.783556884599516,0,0,1.52908960491121,0.263766978228454,0,0.331397375727916,0,0,0,0,2.58554221961255,5.10001728110633,7.8363680369522,0,0,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0.12663051166458,0.662045904066094,0.286836620748814,0,0.560677600142307,0,0.24666754841716,0,0,0,0,0,0.234321431833797,0,0,0.298897361103602,0.469737994575059,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,0,0,0.113432183160021,0.89694817844431,1.06778694409284,0.847727604638247,1.20036438433761,0.618315175430633,0.515281080091258,0.18611685633159,1.0126579934476,0.194874010322397,0.252433774244115,1.10459878370759,2.42469085228218,0.710019185033229,0.403008392910561,0.169560592310488,0.386521706326594,0,0,0.487894824518382,0.795178609928912,0.580969714347592,0.932949495138334,0.252320850875628,0.36497735907583,0,1.28648187638577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283550194484773,0.447792613514241,0.290633938513962,0.383382679165211,0,0,0,0.288239906833923,0,0.063497894292169,0,0,0,0.102827492703324,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0.637938751653163,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0.195801157462741,1.02943027143257,0,0,0,3.94065842880137,1.66435439510497,5.74541557326393,0,0,0.280660094433074,0,0,0,0,0.154209693802656,0,0.0821271560138091,0,0,0,0,0,0,0,0.131124414959424,0,0.0770153371044148,0.784349769176855,0,0,0,0,0,0,0,0,0.254876273045038,0,0.671624264166535,0,0,0,0,0,0.206082023295445,0.457847324091717,0.247528499761764,1.14853107599234,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0.382838137483752,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487426979262569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379473173765715,2.0996083214699,0.0962221127255121,0.670302275535787,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,2.81974010175699,0,0.293016358543788,0,0,0,1.43246690842614,0.890894042497916,0.614321404198464,0,0.140669416410513,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0.241192877250816,0,0.663475559587348,2.06883333267483,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.876214728748802,0.802577647298789,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,1.12990370390266,0.137041924646751,0,0.0633107959558787,0,0,0,0,0,0,0,0,0.372757606696298,0,0.135904206073614,0.209205692624666,1.32597682927218,0,0,0.410716136675979,0,0,0,0,0,0,0,0,0,0.53746777989381,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0,0.335434687599266,0.788057072991982,5.87491387111979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775697738169303,0.39669780522807,0,0,0,0.157204305099666,0,0,0,0,0.638341257770182,0,0,0,0.327872630709804,0,0,0,0,1.72022758707021,0.887432412294818,2.79433813236226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,2.08795433572169,0.226705925512272,0,0,0,0.308801447160972,1.97355644620836,1.06013487567529,0,0.337884881306145,0,0.690860683462397,0.607719912354764,0,0,0,0,0,0,0,0,0.426766918776564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,2.18807844327902,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,1.09651553371436,0,0,0,0,0.336283722218824,0,0,0,0,0,1.90315252335129,0,0,0,0,0.471346769748006,0,0,0,0,0.857718530119876,0,0,0,0,0.828864656652147,1.7071847709395,1.38251932362818,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,3.39997695141398,0,0,0.118920090777569,0,0,0,0,0.218559560503957,0,0,0,1.57046773691956,0,2.113278637917,0,0,0,0,0,0,0,0,0.458729283404541,0.143339583151451,1.26217249754548,0,0,0,0,0,0.432626562123789,0,1.74824915141913,0,0.101988829741982,0.26721740526556,3.49200618232411,0,0,0,0,0.103432995861895,0,1.42838658878244,0,0,0,0.0636471582781649,0,0,0.342233301085281,0,0.0717222053926763,2.66128285236811,0,0,0,0,2.34640942403454,0,0,0,0.201273793591026,0 | ||
|short_description=p4@IRX1 | |short_description=p4@IRX1 | ||
}} | }} |
Latest revision as of 18:48, 17 September 2015
Short description: | p4@IRX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_IRX1_5end |
Coexpression cluster: | NA |
Association with transcript: | 38bp_to_ENST00000302006, NM_024337, uc003jde.2_5end |
EntrezGene: | IRX1 |
HGNC: | 14358 |
UniProt: | P78414 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebellum | 6.85e-16 | 3 |
placental epithelial cell | 1.50e-15 | 3 |
acinar cell | 8.04e-09 | 5 |
protein secreting cell | 2.01e-07 | 6 |
acinar cell of salivary gland | 3.95e-07 | 3 |
oligodendrocyte | 4.81e-07 | 7 |
macroglial cell | 4.81e-07 | 7 |
astrocyte | 4.81e-07 | 7 |
oligodendrocyte precursor cell | 4.81e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
posterior neural tube | 7.19e-25 | 15 |
chordal neural plate | 7.19e-25 | 15 |
segmental subdivision of nervous system | 7.56e-23 | 13 |
segmental subdivision of hindbrain | 2.88e-19 | 12 |
hindbrain | 2.88e-19 | 12 |
presumptive hindbrain | 2.88e-19 | 12 |
regional part of metencephalon | 1.28e-13 | 9 |
metencephalon | 1.28e-13 | 9 |
future metencephalon | 1.28e-13 | 9 |
cerebellum | 1.38e-13 | 6 |
rhombic lip | 1.38e-13 | 6 |
placenta | 8.78e-12 | 4 |
allantois | 8.78e-12 | 4 |
extraembryonic membrane | 1.99e-08 | 14 |
membranous layer | 1.99e-08 | 14 |
brainstem | 8.43e-08 | 6 |
medulla oblongata | 1.98e-07 | 3 |
myelencephalon | 1.98e-07 | 3 |
future myelencephalon | 1.98e-07 | 3 |
saliva-secreting gland | 2.15e-07 | 6 |
gland of oral region | 2.15e-07 | 6 |
gland of foregut | 2.15e-07 | 6 |
oral gland | 2.15e-07 | 6 |
oral cavity | 2.15e-07 | 6 |
spinal cord | 2.63e-07 | 3 |
dorsal region element | 2.63e-07 | 3 |
dorsum | 2.63e-07 | 3 |
chorion | 6.63e-07 | 7 |