FFCP PHASE1:Hg19::chr1:36877554..36877559,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:36877554..36877559,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_at_chr1:36877554..36877559,- | |description=CAGE_peak_at_chr1:36877554..36877559,- | ||
|id=chr1:36877554..36877559,- | |id=chr1:36877554..36877559,- | ||
|ontology_enrichment_celltype=CL:0000860!2.79e-39!45;CL:0002057!4.90e-34!42;CL:0002194!6.30e-32!63;CL:0000576!6.30e-32!63;CL:0000040!6.30e-32!63;CL:0000559!6.30e-32!63;CL:0002031!1.03e-31!124;CL:0000839!3.53e-31!70;CL:0002087!9.10e-31!119;CL:0002009!1.32e-30!65;CL:0000557!1.41e-30!71;CL:0000738!1.81e-30!140;CL:0002032!5.86e-28!165;CL:0000837!5.86e-28!165;CL:0000766!8.35e-28!76;CL:0000037!4.11e-26!172;CL:0000566!4.11e-26!172;CL:0000988!1.00e-24!182;CL:0000763!1.29e-23!112;CL:0000049!1.29e-23!112;CL:0000990!7.26e-10!8;CL:0000451!7.61e-08!10;CL:0002150!1.92e-07!3;CL:0000861!1.92e-07!3 | |ontology_enrichment_celltype=CL:0000860!2.79e-39!45;CL:0002057!4.90e-34!42;CL:0002194!6.30e-32!63;CL:0000576!6.30e-32!63;CL:0000040!6.30e-32!63;CL:0000559!6.30e-32!63;CL:0002031!1.03e-31!124;CL:0000839!3.53e-31!70;CL:0002087!9.10e-31!119;CL:0002009!1.32e-30!65;CL:0000557!1.41e-30!71;CL:0000738!1.81e-30!140;CL:0002032!5.86e-28!165;CL:0000837!5.86e-28!165;CL:0000766!8.35e-28!76;CL:0000037!4.11e-26!172;CL:0000566!4.11e-26!172;CL:0000988!1.00e-24!182;CL:0000763!1.29e-23!112;CL:0000049!1.29e-23!112;CL:0000990!7.26e-10!8;CL:0000451!7.61e-08!10;CL:0002150!1.92e-07!3;CL:0000861!1.92e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.14e-54;33!CL:0002057;3.14e-54;33!CL:0000473;1.56e-34;39!CL:0000234;1.56e-34;39!CL:0000576;2.10e-21;48!CL:0000766;4.05e-14;69!CL:0002087;1.63e-11;104!CL:0000763;3.66e-08;100!CL:0000738;2.41e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.85e-43,42;CL:0002057,1.85e-43,42;CL:0000473,1.47e-37,48;CL:0000234,1.47e-37,48;CL:0002194,2.68e-29,59;CL:0000576,2.68e-29,59;CL:0000040,2.68e-29,59;CL:0000559,2.68e-29,59;CL:0002009,3.13e-28,61;CL:0000839,7.63e-26,66;CL:0000557,2.08e-25,67;CL:0000766,2.07e-23,72;CL:0002087,5.36e-21,115;CL:0002031,6.08e-20,120;CL:0000738,6.90e-19,136;CL:0000763,2.93e-16,108;CL:0000049,2.93e-16,108;CL:0002032,3.01e-15,161;CL:0000837,3.01e-15,161;CL:0000037,2.02e-14,168;CL:0000988,1.87e-13,177 | |||
|ontology_enrichment_development_v019=CL:0002057;1.04e-30;42!UBERON:0005754;1.00e-07;1!UBERON:0003124;1.77e-07;1 | |||
|ontology_enrichment_disease=DOID:0060058!1.35e-08!10 | |ontology_enrichment_disease=DOID:0060058!1.35e-08!10 | ||
|ontology_enrichment_disease_v019=DOID:0060060;1.77e-07;1!DOID:0060061;1.77e-07;1!DOID:8691;1.77e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,1.83e-07,1;DOID:0060061,1.83e-07,1;DOID:8691,1.83e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!7.70e-26!80;UBERON:0002390!8.05e-24!102;UBERON:0003061!8.05e-24!102;UBERON:0001474!3.06e-23!86;UBERON:0002193!1.43e-20!112;UBERON:0002405!1.18e-18!115;UBERON:0004765!4.00e-18!101;UBERON:0001434!4.00e-18!101;UBERON:0002204!5.51e-07!167;UBERON:0003081!6.26e-07!216 | |ontology_enrichment_uberon=UBERON:0002371!7.70e-26!80;UBERON:0002390!8.05e-24!102;UBERON:0003061!8.05e-24!102;UBERON:0001474!3.06e-23!86;UBERON:0002193!1.43e-20!112;UBERON:0002405!1.18e-18!115;UBERON:0004765!4.00e-18!101;UBERON:0001434!4.00e-18!101;UBERON:0002204!5.51e-07!167;UBERON:0003081!6.26e-07!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0000998;1.00e-07;1!UBERON:0006868;1.00e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.34e-22,76;UBERON:0001474,3.89e-20,82;UBERON:0004765,4.90e-18,90;UBERON:0002405,2.43e-17,93;UBERON:0002390,2.82e-16,98;UBERON:0003061,2.82e-16,98;UBERON:0001434,7.04e-16,100;UBERON:0002193,1.94e-14,108;UBERON:0002204,4.49e-08,167;UBERON:0003081,6.87e-08,203;UBERON:0000998,9.71e-08,1;UBERON:0006868,9.71e-08,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0.46480320348181,0,0,0,0,0,0,0,0,1.30858414901608,1.13362783106643,0.242584061187816,0.464858073811369,0.411167888021826,2.16794459626573,1.43846196161075,1.5369642391746,1.6553756092201,5.17118521104928,3.87290810150296,9.47985406160392,0.564727018627814,0.272906150057846,0,7.03992952453076,6.73950956859797,7.03270838378945,0,0.199463657621632,0.426224750532694,0.580418477257168,3.40431134814684,1.24564449799115,0.75374599577023,0,1.73751075764093,3.63239701580021,2.20966581592539,3.48108626184973,0,0.212604299965044,0.209658645508376,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0.196709770113833,0,0,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0.324547393654683,0.348259474598534,0.398873881556595,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22386941009813,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0.144269212976445,0,0,0,0,0.211673582723883,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.80103689942349,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0.61221999997337,0,0.1137934482855,0,0,0,1.74962768029953,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0.23056390438806,0.0897576444097721,0,0.31900115973192,0,0,1.02193298195737,0,0.166211681900156,0,0,0,0,0.953619473882272,0,0.163232808159148,0,0,0,0.0884575645033392,0,0,0,0.104421949505455,0,0,0,0.182454789215666,0.391329237864179,0,0.394584402849391,0,0,0,1.9542044523884,0,0,0,0,0,0,0,0,0.391969589657511,0,0,0,3.38647159511798,4.60462697642969,2.13500188338344,0.290967049465258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,1.8402114799552,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0,0,0,0,0,0,0,0,0,0,0,0,0.179287339332845,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58089305518355,0.365377795142688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0.584580926518165,1.32864840313363,0.654261577023377,0,0,0.633936370075881,2.19986135440423,0,0,0,0,0,0,0,0,0.471797825567689,0,0.169732529954025,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,2.92717821536708,0,0,0,0,0,0.444925607568277,0,0,0,0,0,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0,4.65725755210022,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193373663920732,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,2.94760543171796,0,0,0,0,0,0.372448285775147,0,0,0,0,0,0,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0.46480320348181,0,0,0,0,0,0,0,0,1.30858414901608,1.13362783106643,0.242584061187816,0.464858073811369,0.411167888021826,2.16794459626573,1.43846196161075,1.5369642391746,1.6553756092201,5.17118521104928,3.87290810150296,9.47985406160392,0.564727018627814,0.272906150057846,0,7.03992952453076,6.73950956859797,7.03270838378945,0,0.199463657621632,0.426224750532694,0.580418477257168,3.40431134814684,1.24564449799115,0.75374599577023,0,1.73751075764093,3.63239701580021,2.20966581592539,3.48108626184973,0,0.212604299965044,0.209658645508376,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0.196709770113833,0,0,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0.324547393654683,0.348259474598534,0.398873881556595,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414656231081544,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22386941009813,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0.144269212976445,0,0,0,0,0.211673582723883,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.80103689942349,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0.61221999997337,0,0.1137934482855,0,0,0,1.74962768029953,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0.23056390438806,0.0897576444097721,0,0.31900115973192,0,0,1.02193298195737,0,0.166211681900156,0,0,0,0,0.953619473882272,0,0.163232808159148,0,0,0,0.0884575645033392,0,0,0,0.104421949505455,0,0,0,0.182454789215666,0.391329237864179,0,0.394584402849391,0,0,0,1.9542044523884,0,0,0,0,0,0,0,0,0.391969589657511,0,0,0,3.38647159511798,4.60462697642969,2.13500188338344,0.290967049465258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,1.8402114799552,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0,0,0,0,0,0,0,0,0,0,0,0,0.179287339332845,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58089305518355,0.365377795142688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0.584580926518165,1.32864840313363,0.654261577023377,0,0,0.633936370075881,2.19986135440423,0,0,0,0,0,0,0,0,0.471797825567689,0,0.169732529954025,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,2.92717821536708,0,0,0,0,0,0.444925607568277,0,0,0,0,0,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0,4.65725755210022,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193373663920732,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,2.94760543171796,0,0,0,0,0,0.372448285775147,0,0,0,0,0,0,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:36877554..36877559,- | |short_description=p@chr1:36877554..36877559,- | ||
}} | }} |
Latest revision as of 07:48, 28 July 2015
Short description: | p@chr1:36877554..36877559, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:36877554..36877559, - |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.85e-43 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.85e-43 | 42 |
defensive cell | 1.47e-37 | 48 |
phagocyte | 1.47e-37 | 48 |
monopoietic cell | 2.68e-29 | 59 |
monocyte | 2.68e-29 | 59 |
monoblast | 2.68e-29 | 59 |
promonocyte | 2.68e-29 | 59 |
macrophage dendritic cell progenitor | 3.13e-28 | 61 |
myeloid lineage restricted progenitor cell | 7.63e-26 | 66 |
granulocyte monocyte progenitor cell | 2.08e-25 | 67 |
myeloid leukocyte | 2.07e-23 | 72 |
nongranular leukocyte | 5.36e-21 | 115 |
hematopoietic lineage restricted progenitor cell | 6.08e-20 | 120 |
leukocyte | 6.90e-19 | 136 |
myeloid cell | 2.93e-16 | 108 |
common myeloid progenitor | 2.93e-16 | 108 |
hematopoietic oligopotent progenitor cell | 3.01e-15 | 161 |
hematopoietic multipotent progenitor cell | 3.01e-15 | 161 |
hematopoietic stem cell | 2.02e-14 | 168 |
hematopoietic cell | 1.87e-13 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.34e-22 | 76 |
bone element | 3.89e-20 | 82 |
skeletal element | 4.90e-18 | 90 |
immune system | 2.43e-17 | 93 |
hematopoietic system | 2.82e-16 | 98 |
blood island | 2.82e-16 | 98 |
skeletal system | 7.04e-16 | 100 |
hemolymphoid system | 1.94e-14 | 108 |
musculoskeletal system | 4.49e-08 | 167 |
lateral plate mesoderm | 6.87e-08 | 203 |
seminal vesicle | 9.71e-08 | 1 |
seminal fluid secreting gland | 9.71e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 1.83e-07 | 1 |
cutaneous T cell lymphoma | 1.83e-07 | 1 |
mycosis fungoides | 1.83e-07 | 1 |