FFCP PHASE1:Hg19::chr8:126241072..126241084,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr8:126241072..126241084,+ | |||
|coexpression_cluster_id=C53 | |||
|description=CAGE_peak_at_chr8:126241072..126241084,+ | |description=CAGE_peak_at_chr8:126241072..126241084,+ | ||
|id=chr8:126241072..126241084,+ | |id=chr8:126241072..126241084,+ | ||
|ontology_enrichment_celltype=CL:0000946!1.17e-09!1;CL:0000786!1.17e-09!1;CL:0000980!1.17e-09!1 | |ontology_enrichment_celltype=CL:0000946!1.17e-09!1;CL:0000786!1.17e-09!1;CL:0000980!1.17e-09!1 | ||
|ontology_enrichment_celltype_v019=CL:0000243;1.02e-07;15!CL:0000125;1.02e-07;15!CL:0000095;5.34e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,1.02e-07,15;CL:0000125,1.02e-07,15;CL:0000030,1.02e-07,15;CL:0000339,1.02e-07,15;CL:0000095,5.34e-07,17;CL:0000123,5.34e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.35e-38;3!UBERON:0006238;2.07e-11;10!CL:0000339;1.02e-07;15 | |||
|ontology_enrichment_disease=DOID:2355!2.16e-10!1;DOID:0060060!6.91e-10!1;DOID:0060061!6.91e-10!1;DOID:8691!6.91e-10!1;DOID:0060058!1.52e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:2355;2.05e-29;1!DOID:74;1.91e-15;2!DOID:0060058;2.44e-12;10!DOID:3093;1.53e-10;11!DOID:1287;2.18e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:2355,1.78e-29,1;DOID:74,1.78e-15,2;DOID:0060058,2.37e-12,10;DOID:3093,1.53e-10,11;DOID:1287,2.11e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0001896!6.98e-13!3;UBERON:0005290!6.98e-13!3;UBERON:0010096!6.98e-13!3;UBERON:0002336!8.99e-10!1;UBERON:0001018!8.99e-10!1;UBERON:0002473!8.99e-10!1;UBERON:0005340!8.99e-10!1;UBERON:0002316!8.99e-10!1;UBERON:0003544!8.99e-10!1;UBERON:0001020!8.99e-10!1;UBERON:0005970!8.99e-10!1;UBERON:0002437!8.99e-10!1;UBERON:0006834!1.07e-09!1;UBERON:0000966!3.61e-08!5;UBERON:0005388!3.61e-08!5;UBERON:0001802!3.61e-08!5;UBERON:0000073!1.64e-07!94;UBERON:0001016!1.64e-07!94;UBERON:0005743!7.81e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0001896;4.67e-38;3!UBERON:0005290;4.67e-38;3!UBERON:0000966;1.21e-23;5!UBERON:0005388;1.21e-23;5!UBERON:0001802;1.21e-23;5!UBERON:0002298;1.26e-19;6!UBERON:0002106;8.17e-11;3!UBERON:0004733;2.46e-10;12!UBERON:0002028;2.46e-10;12!UBERON:0004732;1.29e-09;13!UBERON:0004177;5.38e-07;5!UBERON:0005057;5.38e-07;5!UBERON:0000019;5.92e-07;19!UBERON:0000047;5.92e-07;19!UBERON:0004088;5.92e-07;19!UBERON:0010230;5.92e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,4.67e-38,3;UBERON:0005290,4.67e-38,3;UBERON:0010096,4.67e-38,3;UBERON:0000966,7.13e-20,6;UBERON:0005388,7.13e-20,6;UBERON:0001802,7.13e-20,6;UBERON:0002298,1.26e-19,6;UBERON:0002106,8.17e-11,3;UBERON:0004854,8.17e-11,3;UBERON:0009034,8.17e-11,3;UBERON:0002095,8.17e-11,3;UBERON:0004782,8.17e-11,3;UBERON:0003281,8.17e-11,3;UBERON:0009664,8.17e-11,3;UBERON:0002296,8.17e-11,3;UBERON:0005602,8.17e-11,3;UBERON:0001179,8.17e-11,3;UBERON:0006293,8.17e-11,3;UBERON:0004733,2.46e-10,12;UBERON:0002028,2.46e-10,12;UBERON:0007277,2.46e-10,12;UBERON:0004732,1.29e-09,13;UBERON:0003076,1.85e-08,15;UBERON:0003057,1.85e-08,15;UBERON:0000955,6.03e-07,68;UBERON:0006238,6.03e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709446689665756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658156191461918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.90392296312213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.96356662230246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14681839138014,1.33114861844223,0,15.4950471128579,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,2.43020250200632,6.00451724584361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.39682241994616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709446689665756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658156191461918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.90392296312213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.96356662230246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14681839138014,1.33114861844223,0,15.4950471128579,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,2.43020250200632,6.00451724584361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.39682241994616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p@chr8:126241072..126241084,+ | |short_description=p@chr8:126241072..126241084,+ | ||
}} | }} |
Latest revision as of 14:44, 31 July 2015
Short description: | p@chr8:126241072..126241084, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr8:126241072..126241084, + |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 1.02e-07 | 15 |
glial cell | 1.02e-07 | 15 |
glioblast | 1.02e-07 | 15 |
glioblast (sensu Vertebrata) | 1.02e-07 | 15 |
neuron associated cell | 5.34e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 5.34e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 4.67e-38 | 3 |
myelencephalon | 4.67e-38 | 3 |
future myelencephalon | 4.67e-38 | 3 |
retina | 7.13e-20 | 6 |
photoreceptor array | 7.13e-20 | 6 |
posterior segment of eyeball | 7.13e-20 | 6 |
brainstem | 1.26e-19 | 6 |
spleen | 8.17e-11 | 3 |
gastrointestinal system mesentery | 8.17e-11 | 3 |
stomach region | 8.17e-11 | 3 |
mesentery | 8.17e-11 | 3 |
gastrointestinal system serosa | 8.17e-11 | 3 |
mesentery of stomach | 8.17e-11 | 3 |
gut mesentery | 8.17e-11 | 3 |
dorsal mesentery | 8.17e-11 | 3 |
dorsal mesogastrium | 8.17e-11 | 3 |
peritoneal cavity | 8.17e-11 | 3 |
spleen primordium | 8.17e-11 | 3 |
segmental subdivision of hindbrain | 2.46e-10 | 12 |
hindbrain | 2.46e-10 | 12 |
presumptive hindbrain | 2.46e-10 | 12 |
segmental subdivision of nervous system | 1.29e-09 | 13 |
posterior neural tube | 1.85e-08 | 15 |
chordal neural plate | 1.85e-08 | 15 |
brain | 6.03e-07 | 68 |
future brain | 6.03e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
anemia | 1.78e-29 | 1 |
hematopoietic system disease | 1.78e-15 | 2 |
lymphoma | 2.37e-12 | 10 |
nervous system cancer | 1.53e-10 | 11 |
cardiovascular system disease | 2.11e-08 | 4 |