FFCP PHASE1:Hg19::chr2:21233969..21233982,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=338 | |EntrezGene=338 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=603 | |HGNC=603 | ||
|TSSclassifier=strong | |||
|UniProt=P04114 | |UniProt=P04114 | ||
|association_with_transcript=-38bp_to_X03326_5end | |association_with_transcript=-38bp_to_X03326_5end | ||
|cluster_id=chr2:21233969..21233982,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_10_at_APOB_5end | |description=CAGE_peak_10_at_APOB_5end | ||
|id=chr2:21233969..21233982,- | |id=chr2:21233969..21233982,- | ||
|ontology_enrichment_celltype=CL:0000181!1.41e-26!12;CL:0000417!1.41e-26!12;CL:0000668!1.41e-26!12;CL:0000414!1.41e-26!12;CL:0000412!1.41e-26!12;CL:0000182!1.41e-26!12;CL:0000223!1.26e-08!59;CL:0002322!1.17e-07!5 | |ontology_enrichment_celltype=CL:0000181!1.41e-26!12;CL:0000417!1.41e-26!12;CL:0000668!1.41e-26!12;CL:0000414!1.41e-26!12;CL:0000412!1.41e-26!12;CL:0000182!1.41e-26!12;CL:0000223!1.26e-08!59;CL:0002322!1.17e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000182;8.19e-43;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,8.19e-43,12;CL:0000223,1.28e-11,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.91e-32;11!UBERON:0009497;2.51e-27;13!UBERON:0001041;7.04e-12;30!UBERON:0003104;1.77e-11;31!CL:0000223;4.07e-09;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!4.01e-29!19;UBERON:0006925!4.01e-29!19;UBERON:0008836!4.01e-29!19;UBERON:0008835!5.07e-25!22;UBERON:0003894!5.07e-25!22;UBERON:0009854!6.83e-24!23;UBERON:0007499!6.67e-22!25;UBERON:0009497!6.67e-22!25;UBERON:0000015!6.67e-22!25;UBERON:0002423!6.67e-22!25;UBERON:0006235!6.67e-22!25;UBERON:0004161!6.67e-22!25;UBERON:0005057!5.07e-21!26;UBERON:0009856!5.07e-21!26;UBERON:0002365!1.81e-17!31;UBERON:0002330!1.81e-17!31;UBERON:0002368!2.35e-15!35;UBERON:0003929!6.68e-15!54;UBERON:0000949!1.03e-11!45;UBERON:0002530!6.02e-11!59;UBERON:0004921!6.43e-11!129;UBERON:0004185!6.43e-11!129;UBERON:0006122!6.91e-10!1;UBERON:0007190!1.17e-09!1;UBERON:0005172!2.16e-09!55;UBERON:0005173!2.16e-09!55;UBERON:0005911!2.78e-09!82;UBERON:0001007!1.08e-08!155;UBERON:0001555!1.08e-08!155;UBERON:0007026!1.08e-08!155;UBERON:0002417!2.31e-08!61;UBERON:0000916!2.31e-08!61;UBERON:0004119!8.92e-08!169;UBERON:0000925!8.92e-08!169;UBERON:0006595!8.92e-08!169;UBERON:0000160!1.16e-07!27 | |ontology_enrichment_uberon=UBERON:0002107!4.01e-29!19;UBERON:0006925!4.01e-29!19;UBERON:0008836!4.01e-29!19;UBERON:0008835!5.07e-25!22;UBERON:0003894!5.07e-25!22;UBERON:0009854!6.83e-24!23;UBERON:0007499!6.67e-22!25;UBERON:0009497!6.67e-22!25;UBERON:0000015!6.67e-22!25;UBERON:0002423!6.67e-22!25;UBERON:0006235!6.67e-22!25;UBERON:0004161!6.67e-22!25;UBERON:0005057!5.07e-21!26;UBERON:0009856!5.07e-21!26;UBERON:0002365!1.81e-17!31;UBERON:0002330!1.81e-17!31;UBERON:0002368!2.35e-15!35;UBERON:0003929!6.68e-15!54;UBERON:0000949!1.03e-11!45;UBERON:0002530!6.02e-11!59;UBERON:0004921!6.43e-11!129;UBERON:0004185!6.43e-11!129;UBERON:0006122!6.91e-10!1;UBERON:0007190!1.17e-09!1;UBERON:0005172!2.16e-09!55;UBERON:0005173!2.16e-09!55;UBERON:0005911!2.78e-09!82;UBERON:0001007!1.08e-08!155;UBERON:0001555!1.08e-08!155;UBERON:0007026!1.08e-08!155;UBERON:0002417!2.31e-08!61;UBERON:0000916!2.31e-08!61;UBERON:0004119!8.92e-08!169;UBERON:0000925!8.92e-08!169;UBERON:0006595!8.92e-08!169;UBERON:0000160!1.16e-07!27 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.14e-47;19!UBERON:0006925;2.14e-47;19!UBERON:0002423;6.58e-36;25!UBERON:0002365;8.97e-28;31!UBERON:0002330;8.97e-28;31!UBERON:0002108;6.05e-26;4!UBERON:0002368;1.72e-24;33!UBERON:0000949;6.04e-18;43!UBERON:0002530;4.19e-12;57!UBERON:0005172;9.58e-11;52!UBERON:0005173;9.58e-11;52!UBERON:0001007;3.27e-10;81!UBERON:0002417;1.88e-09;58!UBERON:0000916;1.88e-09;58!UBERON:0000160;1.19e-07;17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.14e-47,19;UBERON:0006925,2.14e-47,19;UBERON:0008836,2.14e-47,19;UBERON:0008835,7.17e-41,22;UBERON:0003894,7.17e-41,22;UBERON:0009854,4.50e-39,23;UBERON:0007499,6.58e-36,25;UBERON:0009497,6.58e-36,25;UBERON:0000015,6.58e-36,25;UBERON:0002423,6.58e-36,25;UBERON:0006235,6.58e-36,25;UBERON:0004161,6.58e-36,25;UBERON:0009856,1.65e-34,26;UBERON:0002365,7.40e-29,31;UBERON:0002330,7.40e-29,31;UBERON:0002108,5.55e-26,4;UBERON:0002368,1.70e-25,35;UBERON:0003929,1.54e-20,54;UBERON:0000949,1.07e-19,45;UBERON:0002530,9.90e-19,59;UBERON:0005172,2.62e-16,54;UBERON:0005173,2.62e-16,54;UBERON:0004921,5.30e-16,118;UBERON:0002417,1.31e-14,60;UBERON:0000916,1.31e-14,60;UBERON:0005911,3.07e-13,82;UBERON:0001007,8.22e-13,145;UBERON:0001555,8.22e-13,145;UBERON:0007026,8.22e-13,145;UBERON:0004119,1.70e-11,160;UBERON:0000925,1.70e-11,160;UBERON:0006595,1.70e-11,160;UBERON:0001041,7.47e-10,87;UBERON:0005256,1.35e-08,122;UBERON:0005177,2.21e-08,101;UBERON:0011216,9.33e-08,223;UBERON:0000160,1.16e-07,17;UBERON:0009569,1.76e-07,112;UBERON:0003914,3.97e-07,117;UBERON:0000490,6.50e-07,148 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,46.8993628840774,23.587853200263,12.9973779469909,0,0.983907508344908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0877350463246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.57602529119306,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97701981631236,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.973033209536731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.64196868380069,7.99433826297315,6.94256501698104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.79313402068495,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.9326180081019,2.62271472604749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.1741610430924,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,46.8993628840774,23.587853200263,12.9973779469909,0,0.983907508344908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0877350463246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.57602529119306,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97701981631236,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.973033209536731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.64196868380069,7.99433826297315,6.94256501698104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.79313402068495,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.9326180081019,2.62271472604749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.1741610430924,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p10@APOB | |short_description=p10@APOB | ||
}} | }} |
Latest revision as of 23:36, 19 September 2015
Short description: | p10@APOB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_APOB_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -38bp_to_X03326_5end |
EntrezGene: | APOB |
HGNC: | 603 |
UniProt: | P04114 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 8.19e-43 | 12 |
endodermal cell | 1.28e-11 | 58 |