FFCP PHASE1:Hg19::chr15:23086585..23086598,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr15:23086585..23086598,-
|short_description=p4@NIPA1
|description=CAGE_peak_4_at_NIPA1_5end
|association_with_transcript=-149bp_to_ENST00000337435,NM_144599,u...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=123606 | |EntrezGene=123606 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17043 | |HGNC=17043 | ||
|TSSclassifier=strong | |||
|UniProt=Q7RTP0 | |UniProt=Q7RTP0 | ||
|association_with_transcript=-149bp_to_ENST00000337435,NM_144599,uc001yvc.2,uc001yvd.2_5end | |||
|cluster_id=chr15:23086585..23086598,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_4_at_NIPA1_5end | |||
|id=chr15:23086585..23086598,- | |||
|ontology_enrichment_celltype=CL:0002009!4.16e-14!65;CL:0000557!9.14e-13!71;CL:0002194!1.02e-12!63;CL:0000576!1.02e-12!63;CL:0000040!1.02e-12!63;CL:0000559!1.02e-12!63;CL:0000860!1.02e-11!45;CL:0000839!3.68e-11!70;CL:0002057!6.40e-11!42;CL:0000766!1.77e-09!76 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.41e-51;33!CL:0002057;1.41e-51;33!CL:0000473;8.13e-39;39!CL:0000234;8.13e-39;39!CL:0000576;1.82e-21;48!CL:0000766;6.89e-15;69!CL:0002087;1.23e-08;104!CL:0000047;7.03e-08;2!CL:0000763;8.08e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.52e-44,42;CL:0002057,5.52e-44,42;CL:0000473,2.41e-38,48;CL:0000234,2.41e-38,48;CL:0002194,1.94e-30,59;CL:0000576,1.94e-30,59;CL:0000040,1.94e-30,59;CL:0000559,1.94e-30,59;CL:0002009,2.04e-29,61;CL:0000839,3.95e-27,66;CL:0000557,1.03e-26,67;CL:0000766,8.48e-25,72;CL:0000763,3.56e-16,108;CL:0000049,3.56e-16,108;CL:0002087,4.07e-15,115;CL:0002031,1.96e-14,120;CL:0000738,1.38e-12,136;CL:0002032,2.02e-10,161;CL:0000837,2.02e-10,161;CL:0000037,6.28e-10,168;CL:0000988,2.37e-09,177 | |||
|ontology_enrichment_development_v019=CL:0002057;3.86e-33;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!8.09e-11!80;UBERON:0001474!1.41e-10!86;UBERON:0002405!3.03e-09!115;UBERON:0004765!1.02e-08!101;UBERON:0001434!1.02e-08!101;UBERON:0002619!5.12e-08!22;UBERON:0007023!7.36e-08!115;UBERON:0002390!2.76e-07!102;UBERON:0003061!2.76e-07!102;UBERON:0002193!3.20e-07!112;UBERON:0001893!7.78e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0002134;1.84e-14;1!UBERON:0005208;1.84e-14;1!UBERON:0004145;1.84e-14;1!UBERON:0005946;1.84e-14;1!UBERON:0005965;1.84e-14;1!UBERON:0002078;1.84e-14;1!UBERON:0002081;7.03e-08;2!UBERON:0002133;7.03e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.92e-23,76;UBERON:0001474,1.17e-21,82;UBERON:0004765,1.22e-19,90;UBERON:0002405,5.71e-19,93;UBERON:0002390,6.05e-18,98;UBERON:0003061,6.05e-18,98;UBERON:0001434,1.46e-17,100;UBERON:0002193,3.56e-16,108;UBERON:0002134,1.23e-14,1;UBERON:0005208,1.23e-14,1;UBERON:0005946,1.23e-14,1;UBERON:0005965,1.23e-14,1;UBERON:0002078,1.23e-14,1;UBERON:0002204,5.37e-10,167;UBERON:0003081,1.61e-09,203;UBERON:0002081,5.74e-08,2;UBERON:0002133,5.74e-08,2;UBERON:0010227,5.74e-08,2 | |||
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| ||
|short_description=p4@NIPA1 | |||
}} | }} |
Latest revision as of 23:39, 16 September 2015
Short description: | p4@NIPA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NIPA1_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -149bp_to_ENST00000337435, NM_144599, uc001yvc.2, uc001yvd.2_5end |
EntrezGene: | NIPA1 |
HGNC: | 17043 |
UniProt: | Q7RTP0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.52e-44 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.52e-44 | 42 |
defensive cell | 2.41e-38 | 48 |
phagocyte | 2.41e-38 | 48 |
monopoietic cell | 1.94e-30 | 59 |
monocyte | 1.94e-30 | 59 |
monoblast | 1.94e-30 | 59 |
promonocyte | 1.94e-30 | 59 |
macrophage dendritic cell progenitor | 2.04e-29 | 61 |
myeloid lineage restricted progenitor cell | 3.95e-27 | 66 |
granulocyte monocyte progenitor cell | 1.03e-26 | 67 |
myeloid leukocyte | 8.48e-25 | 72 |
myeloid cell | 3.56e-16 | 108 |
common myeloid progenitor | 3.56e-16 | 108 |
nongranular leukocyte | 4.07e-15 | 115 |
hematopoietic lineage restricted progenitor cell | 1.96e-14 | 120 |
leukocyte | 1.38e-12 | 136 |
hematopoietic oligopotent progenitor cell | 2.02e-10 | 161 |
hematopoietic multipotent progenitor cell | 2.02e-10 | 161 |
hematopoietic stem cell | 6.28e-10 | 168 |
hematopoietic cell | 2.37e-09 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.92e-23 | 76 |
bone element | 1.17e-21 | 82 |
skeletal element | 1.22e-19 | 90 |
immune system | 5.71e-19 | 93 |
hematopoietic system | 6.05e-18 | 98 |
blood island | 6.05e-18 | 98 |
skeletal system | 1.46e-17 | 100 |
hemolymphoid system | 3.56e-16 | 108 |
tricuspid valve | 1.23e-14 | 1 |
right atrium valve | 1.23e-14 | 1 |
outflow tract of atrium | 1.23e-14 | 1 |
outflow part of right atrium | 1.23e-14 | 1 |
right cardiac atrium | 1.23e-14 | 1 |
musculoskeletal system | 5.37e-10 | 167 |
lateral plate mesoderm | 1.61e-09 | 203 |
cardiac atrium | 5.74e-08 | 2 |
atrioventricular valve | 5.74e-08 | 2 |
future cardiac atrium | 5.74e-08 | 2 |