FFCP PHASE1:Hg19::chr4:83931905..83931993,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=132660 | |EntrezGene=132660 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25397 | |HGNC=25397 | ||
|TSSclassifier=strong | |||
|UniProt=Q6MZP7,D6REW4,Q7Z3G2 | |UniProt=Q6MZP7,D6REW4,Q7Z3G2 | ||
|association_with_transcript=0bp_to_ENST00000340417,ENST00000446851,ENST00000510877,NM_001115008,NM_194282,uc003hnx.3,uc003hny.3,uc003hnz.3,uc010ijt.2,uc010iju.2_5end | |association_with_transcript=0bp_to_ENST00000340417,ENST00000446851,ENST00000510877,NM_001115008,NM_194282,uc003hnx.3,uc003hny.3,uc003hnz.3,uc010ijt.2,uc010iju.2_5end | ||
|cluster_id=chr4:83931905..83931993,- | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_2_at_LIN54_5end | |description=CAGE_peak_2_at_LIN54_5end | ||
|id=chr4:83931905..83931993,- | |id=chr4:83931905..83931993,- | ||
|ontology_enrichment_celltype=CL:0000738!1.06e-21!140;CL:0000037!5.00e-20!172;CL:0000566!5.00e-20!172;CL:0000988!1.38e-17!182;CL:0002032!1.83e-17!165;CL:0000837!1.83e-17!165;CL:0002087!2.25e-16!119;CL:0002031!4.15e-16!124;CL:0000838!4.14e-12!52;CL:0000542!5.06e-12!53;CL:0000051!5.06e-12!53;CL:0000791!2.83e-11!18;CL:0000789!2.83e-11!18;CL:0002420!2.83e-11!18;CL:0002419!2.83e-11!18;CL:0000790!2.83e-11!18;CL:0000134!2.50e-10!358;CL:0002320!1.52e-09!365;CL:0000219!5.20e-09!390;CL:0000766!9.20e-09!76;CL:0000084!1.18e-08!25;CL:0000827!1.18e-08!25;CL:0000625!5.29e-08!11;CL:0000860!7.85e-08!45;CL:0002057!9.26e-08!42;CL:0000763!2.63e-07!112;CL:0000049!2.63e-07!112;CL:0000557!4.65e-07!71 | |ontology_enrichment_celltype=CL:0000738!1.06e-21!140;CL:0000037!5.00e-20!172;CL:0000566!5.00e-20!172;CL:0000988!1.38e-17!182;CL:0002032!1.83e-17!165;CL:0000837!1.83e-17!165;CL:0002087!2.25e-16!119;CL:0002031!4.15e-16!124;CL:0000838!4.14e-12!52;CL:0000542!5.06e-12!53;CL:0000051!5.06e-12!53;CL:0000791!2.83e-11!18;CL:0000789!2.83e-11!18;CL:0002420!2.83e-11!18;CL:0002419!2.83e-11!18;CL:0000790!2.83e-11!18;CL:0000134!2.50e-10!358;CL:0002320!1.52e-09!365;CL:0000219!5.20e-09!390;CL:0000766!9.20e-09!76;CL:0000084!1.18e-08!25;CL:0000827!1.18e-08!25;CL:0000625!5.29e-08!11;CL:0000860!7.85e-08!45;CL:0002057!9.26e-08!42;CL:0000763!2.63e-07!112;CL:0000049!2.63e-07!112;CL:0000557!4.65e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.53e-11;18!CL:0000789;1.53e-11;18!CL:0002419;1.53e-11;18!CL:0000084;8.57e-09;25!CL:0000860;3.28e-08;33!CL:0002057;3.28e-08;33!CL:0000625;3.90e-08;11!CL:0000542;7.21e-07;53!CL:0002087;9.23e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,5.39e-22,136;CL:0000037,3.56e-20,168;CL:0000988,2.70e-18,177;CL:0002032,1.36e-17,161;CL:0000837,1.36e-17,161;CL:0002087,1.23e-16,115;CL:0002031,2.55e-16,120;CL:0000838,4.70e-12,52;CL:0000542,5.73e-12,53;CL:0000051,5.73e-12,53;CL:0000791,2.80e-11,18;CL:0000789,2.80e-11,18;CL:0002420,2.80e-11,18;CL:0002419,2.80e-11,18;CL:0000790,2.80e-11,18;CL:0000134,1.78e-10,354;CL:0002320,1.09e-09,361;CL:0000219,3.93e-09,386;CL:0000766,5.17e-09,72;CL:0000084,1.37e-08,25;CL:0000827,1.37e-08,25;CL:0000625,5.25e-08,11;CL:0000860,9.19e-08,42;CL:0002057,9.19e-08,42;CL:0000763,2.16e-07,108;CL:0000049,2.16e-07,108;CL:0000557,2.94e-07,67 | |||
|ontology_enrichment_development_v019=CL:0000790;1.53e-11;18!CL:0000051;7.21e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.81e-10!102;UBERON:0003061!2.81e-10!102;UBERON:0002384!9.45e-10!375;UBERON:0002193!1.15e-08!112 | |ontology_enrichment_uberon=UBERON:0002390!2.81e-10!102;UBERON:0003061!2.81e-10!102;UBERON:0002384!9.45e-10!375;UBERON:0002193!1.15e-08!112 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.73e-10,98;UBERON:0003061,1.73e-10,98;UBERON:0002384,6.81e-10,371;UBERON:0002193,8.49e-09,108 | |||
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| ||
|short_description=p2@LIN54 | |short_description=p2@LIN54 | ||
}} | }} |
Latest revision as of 01:34, 19 September 2015
Short description: | p2@LIN54 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LIN54_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | 0bp_to_ENST00000340417, ENST00000446851, ENST00000510877, NM_001115008, NM_194282, uc003hnx.3, uc003hny.3, uc003hnz.3, uc010ijt.2, uc010iju.2_5end |
EntrezGene: | LIN54 |
HGNC: | 25397 |
UniProt: | Q6MZP7D6REW4Q7Z3G2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 5.39e-22 | 136 |
hematopoietic stem cell | 3.56e-20 | 168 |
hematopoietic cell | 2.70e-18 | 177 |
hematopoietic oligopotent progenitor cell | 1.36e-17 | 161 |
hematopoietic multipotent progenitor cell | 1.36e-17 | 161 |
nongranular leukocyte | 1.23e-16 | 115 |
hematopoietic lineage restricted progenitor cell | 2.55e-16 | 120 |
lymphoid lineage restricted progenitor cell | 4.70e-12 | 52 |
lymphocyte | 5.73e-12 | 53 |
common lymphoid progenitor | 5.73e-12 | 53 |
mature alpha-beta T cell | 2.80e-11 | 18 |
alpha-beta T cell | 2.80e-11 | 18 |
immature T cell | 2.80e-11 | 18 |
mature T cell | 2.80e-11 | 18 |
immature alpha-beta T cell | 2.80e-11 | 18 |
mesenchymal cell | 1.78e-10 | 354 |
connective tissue cell | 1.09e-09 | 361 |
motile cell | 3.93e-09 | 386 |
myeloid leukocyte | 5.17e-09 | 72 |
T cell | 1.37e-08 | 25 |
pro-T cell | 1.37e-08 | 25 |
CD8-positive, alpha-beta T cell | 5.25e-08 | 11 |
classical monocyte | 9.19e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.19e-08 | 42 |
myeloid cell | 2.16e-07 | 108 |
common myeloid progenitor | 2.16e-07 | 108 |
granulocyte monocyte progenitor cell | 2.94e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.73e-10 | 98 |
blood island | 1.73e-10 | 98 |
connective tissue | 6.81e-10 | 371 |
hemolymphoid system | 8.49e-09 | 108 |