FFCP PHASE1:Hg19::chr5:146939550..146939564,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=153469 | |EntrezGene=153469 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000506321,NR_038902,uc003lop.1_5end | |association_with_transcript=0bp_to_ENST00000506321,NR_038902,uc003lop.1_5end | ||
|cluster_id=chr5:146939550..146939564,+ | |||
|description=CAGE_peak_1_at_LOC153469_5end | |description=CAGE_peak_1_at_LOC153469_5end | ||
|id=chr5:146939550..146939564,+ | |id=chr5:146939550..146939564,+ | ||
|ontology_enrichment_celltype=CL:0002319!1.93e-27!25;CL:0000047!9.94e-26!8;CL:0000133!1.42e-20!59;CL:0000540!8.37e-20!6;CL:0000031!8.37e-20!6;CL:0000404!8.37e-20!6;CL:0002322!1.90e-17!5;CL:0000221!3.16e-16!71;CL:0000128!4.09e-16!7;CL:0000126!4.09e-16!7;CL:0000127!4.09e-16!7;CL:0002453!4.09e-16!7;CL:0000243!4.89e-11!15;CL:0000125!4.89e-11!15;CL:0000030!4.89e-11!15;CL:0000339!4.89e-11!15;CL:0000064!1.35e-10!3;CL:0005012!1.35e-10!3;CL:0000067!1.35e-10!3;CL:0002304!1.35e-10!3;CL:0002605!1.44e-10!3;CL:0000095!1.00e-09!17;CL:0000123!1.00e-09!17;CL:0000333!5.28e-07!41 | |ontology_enrichment_celltype=CL:0002319!1.93e-27!25;CL:0000047!9.94e-26!8;CL:0000133!1.42e-20!59;CL:0000540!8.37e-20!6;CL:0000031!8.37e-20!6;CL:0000404!8.37e-20!6;CL:0002322!1.90e-17!5;CL:0000221!3.16e-16!71;CL:0000128!4.09e-16!7;CL:0000126!4.09e-16!7;CL:0000127!4.09e-16!7;CL:0002453!4.09e-16!7;CL:0000243!4.89e-11!15;CL:0000125!4.89e-11!15;CL:0000030!4.89e-11!15;CL:0000339!4.89e-11!15;CL:0000064!1.35e-10!3;CL:0005012!1.35e-10!3;CL:0000067!1.35e-10!3;CL:0002304!1.35e-10!3;CL:0002605!1.44e-10!3;CL:0000095!1.00e-09!17;CL:0000123!1.00e-09!17;CL:0000333!5.28e-07!41 | ||
|ontology_enrichment_celltype_v019=CL:0002319;2.68e-40;25!CL:0002322;2.53e-35;5!CL:0000128;8.79e-24;7!CL:0000126;8.79e-24;7!CL:0000127;8.79e-24;7!CL:0002605;1.11e-20;3!CL:0000064;1.15e-20;3!CL:0000067;1.15e-20;3!CL:0005012;1.15e-20;3!CL:0002304;1.15e-20;3!CL:0000540;3.85e-19;6!CL:0000404;3.85e-19;6!CL:0000243;9.81e-19;15!CL:0000125;9.81e-19;15!CL:0000095;1.11e-16;17!CL:0000047;2.07e-14;2!CL:0000710;6.62e-12;20!CL:0002321;1.11e-11;15!CL:0000075;1.18e-11;27!CL:0002603;6.36e-10;3!CL:0000148;6.64e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,2.91e-40,25;CL:0000133,8.78e-37,59;CL:0002322,2.53e-35,5;CL:0000047,8.65e-31,8;CL:0000221,1.10e-29,72;CL:0000128,9.68e-24,7;CL:0000126,9.68e-24,7;CL:0000127,9.68e-24,7;CL:0002453,9.68e-24,7;CL:0000064,1.01e-20,3;CL:0000067,1.01e-20,3;CL:0005012,1.01e-20,3;CL:0002304,1.01e-20,3;CL:0002605,1.15e-20,3;CL:0000540,4.12e-19,6;CL:0000031,4.12e-19,6;CL:0000404,4.12e-19,6;CL:0000243,1.04e-18,15;CL:0000125,1.04e-18,15;CL:0000030,1.04e-18,15;CL:0000339,1.04e-18,15;CL:0000095,1.16e-16,17;CL:0000123,1.16e-16,17;CL:0000333,3.01e-14,41;CL:0000710,6.30e-12,20;CL:0000075,1.14e-11,27;CL:0002603,6.81e-10,3;CL:0002321,5.30e-08,250;CL:0000148,6.57e-07,10;CL:0000541,6.57e-07,10;CL:0002077,8.43e-07,34 | |||
|ontology_enrichment_development_v019=CL:0000133;4.34e-20;59!CL:0000031;3.85e-19;6!CL:0000339;9.81e-19;15!CL:0000221;2.29e-11;72!UBERON:0009117;8.29e-07;10!UBERON:0005564;8.29e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0050619;2.10e-08;1!DOID:1357;2.10e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0050619,2.02e-08,1;DOID:1357,2.02e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0005743!4.40e-19!86;UBERON:0001017!1.28e-18!82;UBERON:0000073!1.15e-16!94;UBERON:0001016!1.15e-16!94;UBERON:0000488!3.59e-13!4;UBERON:0004121!1.44e-11!169;UBERON:0000924!3.99e-11!173;UBERON:0006601!3.99e-11!173;UBERON:0001778!1.35e-10!3;UBERON:0001775!1.35e-10!3;UBERON:0007625!6.15e-10!11;UBERON:0001896!1.51e-09!3;UBERON:0005290!1.51e-09!3;UBERON:0010096!1.51e-09!3;UBERON:0003075!2.59e-09!86;UBERON:0007284!2.59e-09!86;UBERON:0000033!3.13e-09!123;UBERON:0003076!3.53e-09!15;UBERON:0003057!3.53e-09!15;UBERON:0000970!7.81e-09!20;UBERON:0002203!8.70e-09!6;UBERON:0001768!8.70e-09!6;UBERON:0004733!9.89e-09!12;UBERON:0002028!9.89e-09!12;UBERON:0007277!9.89e-09!12;UBERON:0002346!1.06e-08!90;UBERON:0000153!1.53e-08!129;UBERON:0007811!1.53e-08!129;UBERON:0000955!1.93e-08!69;UBERON:0006238!1.93e-08!69;UBERON:0002104!2.39e-08!21;UBERON:0004732!5.23e-08!13;UBERON:0001801!1.18e-07!14;UBERON:0000020!1.66e-07!23;UBERON:0000019!2.84e-07!19;UBERON:0000047!2.84e-07!19;UBERON:0004088!2.84e-07!19;UBERON:0003072!2.84e-07!19;UBERON:0003071!2.84e-07!19;UBERON:0004128!2.84e-07!19;UBERON:0001032!3.87e-07!24;UBERON:0004456!3.87e-07!24;UBERON:0002200!5.86e-07!11;UBERON:0006876!5.86e-07!11 | |ontology_enrichment_uberon=UBERON:0005743!4.40e-19!86;UBERON:0001017!1.28e-18!82;UBERON:0000073!1.15e-16!94;UBERON:0001016!1.15e-16!94;UBERON:0000488!3.59e-13!4;UBERON:0004121!1.44e-11!169;UBERON:0000924!3.99e-11!173;UBERON:0006601!3.99e-11!173;UBERON:0001778!1.35e-10!3;UBERON:0001775!1.35e-10!3;UBERON:0007625!6.15e-10!11;UBERON:0001896!1.51e-09!3;UBERON:0005290!1.51e-09!3;UBERON:0010096!1.51e-09!3;UBERON:0003075!2.59e-09!86;UBERON:0007284!2.59e-09!86;UBERON:0000033!3.13e-09!123;UBERON:0003076!3.53e-09!15;UBERON:0003057!3.53e-09!15;UBERON:0000970!7.81e-09!20;UBERON:0002203!8.70e-09!6;UBERON:0001768!8.70e-09!6;UBERON:0004733!9.89e-09!12;UBERON:0002028!9.89e-09!12;UBERON:0007277!9.89e-09!12;UBERON:0002346!1.06e-08!90;UBERON:0000153!1.53e-08!129;UBERON:0007811!1.53e-08!129;UBERON:0000955!1.93e-08!69;UBERON:0006238!1.93e-08!69;UBERON:0002104!2.39e-08!21;UBERON:0004732!5.23e-08!13;UBERON:0001801!1.18e-07!14;UBERON:0000020!1.66e-07!23;UBERON:0000019!2.84e-07!19;UBERON:0000047!2.84e-07!19;UBERON:0004088!2.84e-07!19;UBERON:0003072!2.84e-07!19;UBERON:0003071!2.84e-07!19;UBERON:0004128!2.84e-07!19;UBERON:0001032!3.87e-07!24;UBERON:0004456!3.87e-07!24;UBERON:0002200!5.86e-07!11;UBERON:0006876!5.86e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0001778;1.15e-20;3!UBERON:0001775;1.15e-20;3!UBERON:0000488;1.18e-15;4!UBERON:0002203;1.27e-10;6!UBERON:0001768;1.27e-10;6!UBERON:0002200;1.27e-10;6!UBERON:0007625;5.60e-10;11!UBERON:0001764;2.10e-08;1!UBERON:0001825;2.10e-08;1!UBERON:0001801;7.19e-08;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,1.01e-20,3;UBERON:0001775,1.01e-20,3;UBERON:0000488,1.07e-15,4;UBERON:0001017,1.80e-11,81;UBERON:0002203,1.19e-10,6;UBERON:0001768,1.19e-10,6;UBERON:0002200,1.19e-10,6;UBERON:0001016,4.10e-10,89;UBERON:0007625,5.40e-10,11;UBERON:0001764,2.02e-08,1;UBERON:0001825,2.02e-08,1;UBERON:0004121,5.41e-08,171;UBERON:0000924,5.41e-08,171;UBERON:0006601,5.41e-08,171;UBERON:0001801,7.00e-08,14 | |||
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| ||
|short_description=p1@LOC153469 | |short_description=p1@LOC153469 | ||
}} | }} |
Latest revision as of 22:35, 15 September 2015
Short description: | p1@LOC153469 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LOC153469_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000506321, NR_038902, uc003lop.1_5end |
EntrezGene: | LOC153469 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 2.91e-40 | 25 |
neurectodermal cell | 8.78e-37 | 59 |
embryonic stem cell | 2.53e-35 | 5 |
neuronal stem cell | 8.65e-31 | 8 |
ectodermal cell | 1.10e-29 | 72 |
oligodendrocyte | 9.68e-24 | 7 |
macroglial cell | 9.68e-24 | 7 |
astrocyte | 9.68e-24 | 7 |
oligodendrocyte precursor cell | 9.68e-24 | 7 |
ciliated cell | 1.01e-20 | 3 |
ciliated epithelial cell | 1.01e-20 | 3 |
multi-ciliated epithelial cell | 1.01e-20 | 3 |
non-pigmented ciliary epithelial cell | 1.01e-20 | 3 |
astrocyte of the cerebral cortex | 1.15e-20 | 3 |
neuron | 4.12e-19 | 6 |
neuroblast | 4.12e-19 | 6 |
electrically signaling cell | 4.12e-19 | 6 |
glial cell (sensu Vertebrata) | 1.04e-18 | 15 |
glial cell | 1.04e-18 | 15 |
glioblast | 1.04e-18 | 15 |
glioblast (sensu Vertebrata) | 1.04e-18 | 15 |
neuron associated cell | 1.16e-16 | 17 |
neuron associated cell (sensu Vertebrata) | 1.16e-16 | 17 |
migratory neural crest cell | 3.01e-14 | 41 |
neurecto-epithelial cell | 6.30e-12 | 20 |
columnar/cuboidal epithelial cell | 1.14e-11 | 27 |
astrocyte of the cerebellum | 6.81e-10 | 3 |
embryonic cell | 5.30e-08 | 250 |
melanocyte | 6.57e-07 | 10 |
melanoblast | 6.57e-07 | 10 |
ecto-epithelial cell | 8.43e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 1.01e-20 | 3 |
ciliary body | 1.01e-20 | 3 |
atypical epithelium | 1.07e-15 | 4 |
central nervous system | 1.80e-11 | 81 |
vasculature of eye | 1.19e-10 | 6 |
uvea | 1.19e-10 | 6 |
vasculature of head | 1.19e-10 | 6 |
nervous system | 4.10e-10 | 89 |
pigment epithelium of eye | 5.40e-10 | 11 |
maxillary sinus | 2.02e-08 | 1 |
paranasal sinus | 2.02e-08 | 1 |
ectoderm-derived structure | 5.41e-08 | 171 |
ectoderm | 5.41e-08 | 171 |
presumptive ectoderm | 5.41e-08 | 171 |
anterior segment of eyeball | 7.00e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
paranasal sinus cancer | 2.02e-08 | 1 |
maxillary sinus cancer | 2.02e-08 | 1 |