FFCP PHASE1:Hg19::chr15:72490114..72490145,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr15:72490114..72490145,-
|short_description=p1@GRAMD2
|description=CAGE_peak_1_at_GRAMD2_5end
|association_with_transcript=0bp_to_ENST00000309731,NM_001012642...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=196996 | |EntrezGene=196996 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27287 | |HGNC=27287 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IUY3 | |UniProt=Q8IUY3 | ||
|association_with_transcript=0bp_to_ENST00000309731,NM_001012642,uc002atq.2,uc010bis.2_5end | |||
|cluster_id=chr15:72490114..72490145,- | |||
|description=CAGE_peak_1_at_GRAMD2_5end | |||
|id=chr15:72490114..72490145,- | |||
|ontology_enrichment_celltype=CL:0000066!1.02e-15!254;CL:0002368!2.16e-08!13;CL:0002076!4.40e-08!43 | |||
|ontology_enrichment_celltype_v019=CL:0002368;2.02e-13;13!CL:0000349;2.33e-12;19!CL:0000039;9.72e-11;7!CL:0000586;9.72e-11;7!CL:0000622;1.79e-10;5!CL:0002076;2.31e-10;42!CL:0000154;1.20e-08;6!CL:0000150;6.89e-08;9!CL:0002577;7.47e-08;3!CL:0002202;1.04e-07;9!CL:0002632;1.04e-07;9!CL:0000307;8.04e-07;3!CL:0002541;8.37e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.63e-16,253;CL:0002076,1.50e-13,42;CL:0002368,2.86e-13,13;CL:0000349,1.85e-12,19;CL:0000039,7.36e-11,7;CL:0000586,7.36e-11,7;CL:0000622,1.46e-10,5;CL:0000154,1.02e-08,6;CL:0000223,2.10e-08,58;CL:0000150,5.90e-08,9;CL:0002577,7.60e-08,3;CL:0002202,1.51e-07,9;CL:0002632,1.51e-07,9;CL:0002541,5.60e-07,3;CL:0000068,9.12e-07,3;CL:0000069,9.12e-07,3;CL:0000307,9.12e-07,3;CL:0000377,9.12e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000377;8.04e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1749;1.45e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.27e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004121!1.38e-20!169;UBERON:0000924!8.74e-20!173;UBERON:0006601!8.74e-20!173;UBERON:0000064!2.01e-16!219;UBERON:0001004!3.22e-14!72;UBERON:0000153!2.64e-13!129;UBERON:0007811!2.64e-13!129;UBERON:0000033!5.21e-13!123;UBERON:0002616!1.26e-12!59;UBERON:0001049!1.37e-12!57;UBERON:0005068!1.37e-12!57;UBERON:0006241!1.37e-12!57;UBERON:0007135!1.37e-12!57;UBERON:0005743!2.30e-12!86;UBERON:0004119!5.21e-12!169;UBERON:0000925!5.21e-12!169;UBERON:0006595!5.21e-12!169;UBERON:0001017!7.64e-12!82;UBERON:0000062!8.04e-12!511;UBERON:0003075!2.13e-11!86;UBERON:0007284!2.13e-11!86;UBERON:0000955!5.44e-11!69;UBERON:0006238!5.44e-11!69;UBERON:0000073!6.63e-11!94;UBERON:0001016!6.63e-11!94;UBERON:0000065!1.40e-10!53;UBERON:0002346!1.43e-10!90;UBERON:0007023!1.79e-10!115;UBERON:0000475!1.24e-09!365;UBERON:0005631!2.65e-09!14;UBERON:0000158!2.65e-09!14;UBERON:0000464!3.38e-09!104;UBERON:0000119!3.40e-09!312;UBERON:0000481!6.42e-09!347;UBERON:0000922!7.04e-09!612;UBERON:0000477!7.31e-09!286;UBERON:0000483!8.89e-09!309;UBERON:0005178!8.91e-09!34;UBERON:0002224!8.91e-09!34;UBERON:0008947!1.76e-08!38;UBERON:0003258!1.76e-08!38;UBERON:0004111!2.70e-08!241;UBERON:0005181!2.86e-08!35;UBERON:0005157!3.74e-08!51;UBERON:0005153!5.40e-08!37;UBERON:0002050!9.19e-08!605;UBERON:0005423!9.19e-08!605;UBERON:0003076!1.03e-07!15;UBERON:0003057!1.03e-07!15;UBERON:0000923!1.64e-07!604;UBERON:0005291!1.64e-07!604;UBERON:0006598!1.64e-07!604;UBERON:0002532!1.64e-07!604;UBERON:0003124!2.47e-07!7;UBERON:0000166!2.54e-07!21;UBERON:0001007!2.60e-07!155;UBERON:0001555!2.60e-07!155;UBERON:0007026!2.60e-07!155;UBERON:0005177!3.32e-07!107;UBERON:0003080!4.15e-07!42;UBERON:0000466!5.48e-07!126;UBERON:0000072!6.35e-07!46;UBERON:0000467!9.84e-07!625 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.64e-13;10!UBERON:0000158;1.64e-13;10!UBERON:0000478;3.79e-11;24!UBERON:0001044;5.54e-11;6!UBERON:0003293;5.54e-11;6!UBERON:0003294;5.54e-11;6!UBERON:0010047;5.54e-11;6!UBERON:0003408;5.54e-11;6!UBERON:0000167;5.54e-11;6!UBERON:0001987;5.51e-10;4!UBERON:0000305;1.47e-08;7!UBERON:0005178;2.02e-07;34!UBERON:0002224;2.02e-07;34!UBERON:0006947;6.24e-07;3!UBERON:0004054;6.24e-07;3!UBERON:0003124;8.37e-07;3!UBERON:0000920;8.37e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.23e-21,14;UBERON:0000158,1.23e-21,14;UBERON:0003124,2.90e-15,7;UBERON:0000478,3.12e-11,24;UBERON:0001044,4.50e-11,6;UBERON:0003293,4.50e-11,6;UBERON:0003294,4.50e-11,6;UBERON:0010047,4.50e-11,6;UBERON:0000167,4.50e-11,6;UBERON:0001004,5.50e-10,74;UBERON:0001987,5.61e-10,4;UBERON:0004340,5.61e-10,4;UBERON:0005178,1.07e-08,34;UBERON:0002224,1.07e-08,34;UBERON:0000305,1.44e-08,7;UBERON:0004119,1.61e-08,160;UBERON:0000925,1.61e-08,160;UBERON:0006595,1.61e-08,160;UBERON:0005181,2.36e-08,35;UBERON:0004871,2.05e-07,8;UBERON:0006947,4.56e-07,3;UBERON:0004054,4.56e-07,3;UBERON:0006554,5.40e-07,47;UBERON:0000920,5.60e-07,3;UBERON:0001008,9.00e-07,48;UBERON:0004175,9.30e-07,25 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0.982935746006035,2.79120467188971,32.1108817031353,21.1013582582763,0.123766352960047,0,0,0,0,0,0.246242116153576,0.612002073732759,0.940364164434263,0.286235987131057,0.547497700291537,0.627713197974014,0,0,0,0,0.383829398097213,0.154816123316076,4.59710612239464,0.90361775633475,3.32778609150109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0.973269740605272,0,0.221729397462564,0.175669571386252,2.88153966094968,8.01449634243593,4.82019775619758,0,0.174129737299267,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0.949265659568129,0,0,0,11.3384453557059,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0.151357427644931,0.576175924479999,0.234321431833797,0,0,0,0.23486899728753,0.161872944368132,0,0,0.122834317311768,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.545492241181669,0.860413786167011,0.365921118388786,0.265059536642971,0.464775771478074,0.725627385107593,0.252320850875628,0,0,0.643240938192885,0,0,0,0.236613600079688,0.674338760312407,0.241011029883482,0.330881918197182,0.217879444092406,0.237270619111097,0.404493924480493,0,0,0,0,0.8231480226628,0,0,0,0,0,0,0,1.31700342490351,3.37205259772859,1.50793458617446,5.83307204498736,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,3.04498977189684,4.65014301622339,3.4504441124869,0,0,0,0.144119953416961,0,0,0,0,1.71072446022705,0.102827492703324,0,0,0.112131084345361,0.43596006883328,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76228387266739,0,0.773288812777695,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0.195801157462741,0,0,0,0,9.39695471483404,6.65741758041988,9.07170879989041,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601519410909855,1.84161977871793,0,0,0.262248829918848,0.451199612907412,0.462092022626489,0.784349769176855,1.46139224653261,1.05551628892876,0,0.170093705276516,0,0,0.812839312631559,1.00337954770971,2.54876273045038,0.831076008928724,0.223874754722178,0,0,0.512900250232778,0.328014645699706,0,5.46117361732928,0.0915694648183434,0,5.74265537996172,4.55042172225565,0,0,0.154048617114644,0,0.275673144969061,0.214840489736547,0,0,0.0890320356467374,1.32227932288782,1.92190067365106,3.31793052485919,1.11273558941105,0,0,0,0,0,0,0,0,0.372158369359667,0.316379424718726,0.190630193923825,0.255897791311334,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0.272999822815972,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0.75894634753143,0,2.21310859268678,2.68120910214315,3.26672954583968,5.93105944893709,0.86101074534246,3.36942951335251,1.33029046061003,0.918893600827838,0,0,0,0,0,0,0,0,0,0,2.20536194382929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.1623345421307,11.8785872333055,9.82914246717543,0,0.140669416410513,0.111308705022906,0,1.05562704063997,0,0,4.28285671352269,0,0,0,0.269605053441981,0.179021174675609,0,0.0986434056369336,0,0,0,0.278304294485554,1.99613798001194,0,0.962059999958153,1.44999915086959,1.0241410345695,1.01701460117107,5.90969204419841,0.344743373241465,0,0.347249989866585,0,0.844175070377856,1.52581736317083,0.663475559587348,0.295547618953547,0.219385397153973,0,4.1827123283581,0.0769502585037971,0,20.0590596817612,9.42455266302607,14.3414530937051,1.91400695839152,3.66390373607449,4.26427820814908,0,0,0.166211681900156,0,0,0,0,0,0,1.63232808159148,0,0,0,0.353830258013357,0.611030144933625,0,0,0,0.741412462787447,0,0.234264445725339,0,0.586993856796269,0,3.94584402849391,0,0.30607276163049,0.063186579628488,0,0.103688191397247,0,0,0,0,0,0,0,4.99761226813326,0,3.66926003308263,1.89184635718778,0.870806981601766,1.75414361006845,0.739039113478883,0.581934098930517,0,0,0,0,0.253243183823515,7.23540116118771,0.160317640503067,0.640358984218058,0,0,0,0,0.14405479798815,0.372757606696298,1.64985824231757,0,0,0,0,0.600420288709789,0.410716136675979,0,0,0,0.279282401272254,0.458320848023367,0,0,0,0,0.0671834724867263,0,0,0.0787831823072236,0.0824158583811665,0,0.0984274815147488,0,0,0.953423842781029,0.160753148465019,0.137539436597234,0,0.2249738915515,0.77380195455795,0.425246896606173,0.335434687599266,1.49730843868477,1.04909176269996,0.211200673038813,0,1.15149118391667,0,0,0,0,0,0,0,0.082092520749339,0.170388021785422,0,0,0,0.387848869084652,0.92562821219883,0,0.704815022316672,6.62081957919707,6.13096789888697,6.62782488555513,0,0,0,1.27668251554036,0,0,0,0,0,0,0.244052529803926,0.625954653532499,4.0138643698305,2.44043913381075,0.745156835296601,0.553394539744923,0.249960815924213,0,0.285465333544967,0.235265819698172,0,0.144921028610825,0,0,0,0,0,0.889811221596536,0.228840068396924,0,0,0,0.318593534327405,0,0,0,0,0.521745061811734,0.150257608997218,0,0,0,0,0,0,0.400027764663154,0,0.336749488765919,1.26184898228651,0.192619830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| ||
|short_description=p1@GRAMD2 | |||
}} | }} |
Latest revision as of 22:12, 18 September 2015
Short description: | p1@GRAMD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GRAMD2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000309731, NM_001012642, uc002atq.2, uc010bis.2_5end |
EntrezGene: | GRAMD2 |
HGNC: | 27287 |
UniProt: | Q8IUY3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.63e-16 | 253 |
endo-epithelial cell | 1.50e-13 | 42 |
respiratory epithelial cell | 2.86e-13 | 13 |
extraembryonic cell | 1.85e-12 | 19 |
germ line cell | 7.36e-11 | 7 |
germ cell | 7.36e-11 | 7 |
acinar cell | 1.46e-10 | 5 |
protein secreting cell | 1.02e-08 | 6 |
endodermal cell | 2.10e-08 | 58 |
glandular epithelial cell | 5.90e-08 | 9 |
placental epithelial cell | 7.60e-08 | 3 |
epithelial cell of tracheobronchial tree | 1.51e-07 | 9 |
epithelial cell of lower respiratory tract | 1.51e-07 | 9 |
chorionic membrane mesenchymal stem cell | 5.60e-07 | 3 |
duct epithelial cell | 9.12e-07 | 3 |
branched duct epithelial cell | 9.12e-07 | 3 |
tracheal epithelial cell | 9.12e-07 | 3 |
tracheoblast | 9.12e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.23e-21 | 14 |
membranous layer | 1.23e-21 | 14 |
chorion | 2.90e-15 | 7 |
extraembryonic structure | 3.12e-11 | 24 |
saliva-secreting gland | 4.50e-11 | 6 |
gland of oral region | 4.50e-11 | 6 |
gland of foregut | 4.50e-11 | 6 |
oral gland | 4.50e-11 | 6 |
oral cavity | 4.50e-11 | 6 |
respiratory system | 5.50e-10 | 74 |
placenta | 5.61e-10 | 4 |
allantois | 5.61e-10 | 4 |
thoracic cavity element | 1.07e-08 | 34 |
thoracic cavity | 1.07e-08 | 34 |
amnion | 1.44e-08 | 7 |
endoderm-derived structure | 1.61e-08 | 160 |
endoderm | 1.61e-08 | 160 |
presumptive endoderm | 1.61e-08 | 160 |
thoracic segment organ | 2.36e-08 | 35 |
somatic layer of lateral plate mesoderm | 2.05e-07 | 8 |
male genital duct | 4.56e-07 | 3 |
internal male genitalia | 4.56e-07 | 3 |
urinary system structure | 5.40e-07 | 47 |
egg chorion | 5.60e-07 | 3 |
renal system | 9.00e-07 | 48 |
internal genitalia | 9.30e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.27e-07 | 14 |