FFCP PHASE1:Hg19::chr4:100065421..100065434,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=127 | |EntrezGene=127 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=252 | |HGNC=252 | ||
|TSSclassifier=strong | |||
|UniProt=D6RF43 | |UniProt=D6RF43 | ||
|association_with_transcript=0bp_to_ENST00000505590,ENST00000506705_5end | |association_with_transcript=0bp_to_ENST00000505590,ENST00000506705_5end | ||
|cluster_id=chr4:100065421..100065434,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_2_at_ADH4_5end | |description=CAGE_peak_2_at_ADH4_5end | ||
|id=chr4:100065421..100065434,- | |id=chr4:100065421..100065434,- | ||
|ontology_enrichment_celltype=CL:0002615!4.53e-15!3;CL:0000181!1.34e-14!12;CL:0000417!1.34e-14!12;CL:0000668!1.34e-14!12;CL:0000414!1.34e-14!12;CL:0000412!1.34e-14!12;CL:0000182!1.34e-14!12;CL:0000136!9.49e-08!15 | |ontology_enrichment_celltype=CL:0002615!4.53e-15!3;CL:0000181!1.34e-14!12;CL:0000417!1.34e-14!12;CL:0000668!1.34e-14!12;CL:0000414!1.34e-14!12;CL:0000412!1.34e-14!12;CL:0000182!1.34e-14!12;CL:0000136!9.49e-08!15 | ||
|ontology_enrichment_celltype_v019=CL:0000182;3.40e-37;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,3.40e-37,12;CL:0000223,5.34e-13,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.78e-18;11!UBERON:0009497;1.11e-15;13!CL:0000223;4.04e-10;58!UBERON:0001041;6.37e-07;30 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003688!8.25e-13!6;UBERON:0002358!8.25e-13!6;UBERON:0003684!8.25e-13!6;UBERON:0001178!8.25e-13!6;UBERON:0002417!2.37e-12!61;UBERON:0000916!2.37e-12!61;UBERON:0002107!4.17e-12!19;UBERON:0006925!4.17e-12!19;UBERON:0008836!4.17e-12!19;UBERON:0004921!2.57e-11!129;UBERON:0004185!2.57e-11!129;UBERON:0005057!6.05e-11!26;UBERON:0008835!2.57e-10!22;UBERON:0003894!2.57e-10!22;UBERON:0009854!7.99e-10!23;UBERON:0001007!1.14e-09!155;UBERON:0001555!1.14e-09!155;UBERON:0007026!1.14e-09!155;UBERON:0004457!1.68e-09!12;UBERON:0000042!1.68e-09!12;UBERON:0009569!1.78e-09!113;UBERON:0007499!5.88e-09!25;UBERON:0009497!5.88e-09!25;UBERON:0000015!5.88e-09!25;UBERON:0002423!5.88e-09!25;UBERON:0006235!5.88e-09!25;UBERON:0004161!5.88e-09!25;UBERON:0003929!8.97e-09!54;UBERON:0009856!1.42e-08!26;UBERON:0004119!1.78e-08!169;UBERON:0000925!1.78e-08!169;UBERON:0006595!1.78e-08!169;UBERON:0002368!8.63e-08!35;UBERON:0001041!1.47e-07!98;UBERON:0002365!4.98e-07!31;UBERON:0002330!4.98e-07!31;UBERON:0005172!6.06e-07!55;UBERON:0005173!6.06e-07!55 | |ontology_enrichment_uberon=UBERON:0003688!8.25e-13!6;UBERON:0002358!8.25e-13!6;UBERON:0003684!8.25e-13!6;UBERON:0001178!8.25e-13!6;UBERON:0002417!2.37e-12!61;UBERON:0000916!2.37e-12!61;UBERON:0002107!4.17e-12!19;UBERON:0006925!4.17e-12!19;UBERON:0008836!4.17e-12!19;UBERON:0004921!2.57e-11!129;UBERON:0004185!2.57e-11!129;UBERON:0005057!6.05e-11!26;UBERON:0008835!2.57e-10!22;UBERON:0003894!2.57e-10!22;UBERON:0009854!7.99e-10!23;UBERON:0001007!1.14e-09!155;UBERON:0001555!1.14e-09!155;UBERON:0007026!1.14e-09!155;UBERON:0004457!1.68e-09!12;UBERON:0000042!1.68e-09!12;UBERON:0009569!1.78e-09!113;UBERON:0007499!5.88e-09!25;UBERON:0009497!5.88e-09!25;UBERON:0000015!5.88e-09!25;UBERON:0002423!5.88e-09!25;UBERON:0006235!5.88e-09!25;UBERON:0004161!5.88e-09!25;UBERON:0003929!8.97e-09!54;UBERON:0009856!1.42e-08!26;UBERON:0004119!1.78e-08!169;UBERON:0000925!1.78e-08!169;UBERON:0006595!1.78e-08!169;UBERON:0002368!8.63e-08!35;UBERON:0001041!1.47e-07!98;UBERON:0002365!4.98e-07!31;UBERON:0002330!4.98e-07!31;UBERON:0005172!6.06e-07!55;UBERON:0005173!6.06e-07!55 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;9.50e-32;19!UBERON:0006925;9.50e-32;19!UBERON:0002423;5.04e-24;25!UBERON:0002108;2.01e-22;4!UBERON:0002365;6.50e-19;31!UBERON:0002330;6.50e-19;31!UBERON:0000160;6.49e-17;17!UBERON:0002368;5.73e-16;33!UBERON:0005409;3.06e-13;22!UBERON:0000949;6.33e-13;43!UBERON:0001007;1.16e-11;81!UBERON:0002530;5.24e-09;57!UBERON:0004921;7.36e-08;33!UBERON:0005172;1.57e-07;52!UBERON:0005173;1.57e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,9.50e-32,19;UBERON:0006925,9.50e-32,19;UBERON:0008836,9.50e-32,19;UBERON:0008835,2.32e-27,22;UBERON:0003894,2.32e-27,22;UBERON:0009854,3.75e-26,23;UBERON:0007499,5.04e-24,25;UBERON:0009497,5.04e-24,25;UBERON:0000015,5.04e-24,25;UBERON:0002423,5.04e-24,25;UBERON:0006235,5.04e-24,25;UBERON:0004161,5.04e-24,25;UBERON:0009856,4.41e-23,26;UBERON:0002108,2.09e-22,4;UBERON:0002365,2.79e-19,31;UBERON:0002330,2.79e-19,31;UBERON:0003929,9.09e-18,54;UBERON:0002368,5.11e-17,35;UBERON:0000160,6.49e-17,17;UBERON:0004921,5.21e-16,118;UBERON:0000949,4.09e-13,45;UBERON:0002530,8.58e-13,59;UBERON:0001007,9.49e-13,145;UBERON:0001555,9.49e-13,145;UBERON:0007026,9.49e-13,145;UBERON:0002417,1.47e-12,60;UBERON:0000916,1.47e-12,60;UBERON:0005409,1.04e-11,25;UBERON:0004119,2.09e-11,160;UBERON:0000925,2.09e-11,160;UBERON:0006595,2.09e-11,160;UBERON:0005911,2.33e-11,82;UBERON:0005172,7.84e-11,54;UBERON:0005173,7.84e-11,54;UBERON:0011216,1.37e-07,223 | |||
|phase1_expression=0,0.214100523890983,0.281908808191942,2.00146596706261,0.446961094427288,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397227542439656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,67.1801684555704,8.84544495009863,21.2684366405305,0,7.87126006675927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,2.90062679019893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,122.103598802551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532306030317022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,120.786496396608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41532103205343,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,6.77535367842123,5.27461493639465,8.15582880635637,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,49.2415505158357,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69783147837478,1.09279780251979,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.852935927603924,0,0,0,0,0.0636471582781649,0,0.217716747896961,0,0.0673520530145875,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0.214100523890983,0.281908808191942,2.00146596706261,0.446961094427288,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397227542439656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,67.1801684555704,8.84544495009863,21.2684366405305,0,7.87126006675927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,2.90062679019893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,122.103598802551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532306030317022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,120.786496396608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41532103205343,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,6.77535367842123,5.27461493639465,8.15582880635637,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,49.2415505158357,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69783147837478,1.09279780251979,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.852935927603924,0,0,0,0,0.0636471582781649,0,0.217716747896961,0,0.0673520530145875,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@ADH4 | |short_description=p2@ADH4 | ||
}} | }} |
Latest revision as of 00:58, 20 September 2015
Short description: | p2@ADH4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ADH4_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000505590, ENST00000506705_5end |
EntrezGene: | ADH4 |
HGNC: | 252 |
UniProt: | D6RF43 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 3.40e-37 | 12 |
endodermal cell | 5.34e-13 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 9.50e-32 | 19 |
digestive gland | 9.50e-32 | 19 |
liver bud | 9.50e-32 | 19 |
hepatic diverticulum | 2.32e-27 | 22 |
liver primordium | 2.32e-27 | 22 |
digestive tract diverticulum | 3.75e-26 | 23 |
epithelial sac | 5.04e-24 | 25 |
epithelium of foregut-midgut junction | 5.04e-24 | 25 |
anatomical boundary | 5.04e-24 | 25 |
hepatobiliary system | 5.04e-24 | 25 |
foregut-midgut junction | 5.04e-24 | 25 |
septum transversum | 5.04e-24 | 25 |
sac | 4.41e-23 | 26 |
small intestine | 2.09e-22 | 4 |
exocrine gland | 2.79e-19 | 31 |
exocrine system | 2.79e-19 | 31 |
gut epithelium | 9.09e-18 | 54 |
endocrine gland | 5.11e-17 | 35 |
intestine | 6.49e-17 | 17 |
subdivision of digestive tract | 5.21e-16 | 118 |
endocrine system | 4.09e-13 | 45 |
gland | 8.58e-13 | 59 |
digestive system | 9.49e-13 | 145 |
digestive tract | 9.49e-13 | 145 |
primitive gut | 9.49e-13 | 145 |
abdominal segment of trunk | 1.47e-12 | 60 |
abdomen | 1.47e-12 | 60 |
gastrointestinal system | 1.04e-11 | 25 |
endoderm-derived structure | 2.09e-11 | 160 |
endoderm | 2.09e-11 | 160 |
presumptive endoderm | 2.09e-11 | 160 |
endo-epithelium | 2.33e-11 | 82 |
abdomen element | 7.84e-11 | 54 |
abdominal segment element | 7.84e-11 | 54 |
organ system subdivision | 1.37e-07 | 223 |