FFCP PHASE1:Hg19::chr9:139581876..139581935,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10555 | |EntrezGene=10555 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=325 | |HGNC=325 | ||
|TSSclassifier=strong | |||
|UniProt=O15120 | |UniProt=O15120 | ||
|association_with_transcript=0bp_to_NM_001012727,NM_006412,uc004cii.1,uc004cij.1_5end | |association_with_transcript=0bp_to_NM_001012727,NM_006412,uc004cii.1,uc004cij.1_5end | ||
|cluster_id=chr9:139581876..139581935,- | |||
|description=CAGE_peak_1_at_AGPAT2_5end | |description=CAGE_peak_1_at_AGPAT2_5end | ||
|id=chr9:139581876..139581935,- | |id=chr9:139581876..139581935,- | ||
|ontology_enrichment_celltype=CL:0000012!2.26e-24!682;CL:0000548!2.15e-23!679;CL:0000004!2.15e-23!679;CL:0000255!2.15e-23!679;CL:0000144!2.41e-22!625;CL:0002371!2.58e-20!591;CL:0000003!7.01e-14!722;CL:0000063!1.17e-13!578;CL:0000192!1.33e-10!42;CL:0000514!1.33e-10!42;CL:0000220!1.92e-09!246;CL:0000222!2.16e-09!119;CL:0000359!2.83e-09!32;CL:0002321!5.50e-09!248;CL:0000183!1.28e-08!59;CL:0000680!1.55e-08!57;CL:0000056!1.55e-08!57;CL:0000355!1.55e-08!57;CL:0000187!6.60e-08!54;CL:0000066!1.62e-07!254;CL:0000055!5.96e-07!180 | |ontology_enrichment_celltype=CL:0000012!2.26e-24!682;CL:0000548!2.15e-23!679;CL:0000004!2.15e-23!679;CL:0000255!2.15e-23!679;CL:0000144!2.41e-22!625;CL:0002371!2.58e-20!591;CL:0000003!7.01e-14!722;CL:0000063!1.17e-13!578;CL:0000192!1.33e-10!42;CL:0000514!1.33e-10!42;CL:0000220!1.92e-09!246;CL:0000222!2.16e-09!119;CL:0000359!2.83e-09!32;CL:0002321!5.50e-09!248;CL:0000183!1.28e-08!59;CL:0000680!1.55e-08!57;CL:0000056!1.55e-08!57;CL:0000355!1.55e-08!57;CL:0000187!6.60e-08!54;CL:0000066!1.62e-07!254;CL:0000055!5.96e-07!180 | ||
|ontology_enrichment_celltype_v019=CL:0000359;7.35e-09;32!CL:0000192;1.32e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,3.20e-10,43;CL:0000514,3.20e-10,43;CL:0000359,2.82e-09,32;CL:0000222,5.80e-09,121;CL:0002321,1.02e-08,250;CL:0000680,2.78e-08,58;CL:0000056,2.78e-08,58;CL:0000355,2.78e-08,58;CL:0000187,1.16e-07,55;CL:0000066,1.28e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000514;1.32e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!1.75e-12!448;UBERON:0004120!1.75e-12!448;UBERON:0006603!1.75e-12!448;UBERON:0002100!4.91e-11!216;UBERON:0000486!1.79e-10!82;UBERON:0005256!1.49e-09!143;UBERON:0000914!9.44e-09!83;UBERON:0002329!9.44e-09!83;UBERON:0003077!9.44e-09!83;UBERON:0003059!9.44e-09!83;UBERON:0007282!9.44e-09!83;UBERON:0009618!9.44e-09!83;UBERON:0007285!9.44e-09!83;UBERON:0004290!1.77e-08!70;UBERON:0003914!1.83e-08!118;UBERON:0001637!3.78e-08!42;UBERON:0003509!3.78e-08!42;UBERON:0004572!3.78e-08!42;UBERON:0003104!8.66e-08!238;UBERON:0009142!8.66e-08!238;UBERON:0001134!4.00e-07!61;UBERON:0002036!4.00e-07!61;UBERON:0003082!4.00e-07!61;UBERON:0002204!5.82e-07!167;UBERON:0004573!7.18e-07!33;UBERON:0004571!7.18e-07!33;UBERON:0002385!7.30e-07!63;UBERON:0001015!7.30e-07!63;UBERON:0000383!7.30e-07!63 | |ontology_enrichment_uberon=UBERON:0000926!1.75e-12!448;UBERON:0004120!1.75e-12!448;UBERON:0006603!1.75e-12!448;UBERON:0002100!4.91e-11!216;UBERON:0000486!1.79e-10!82;UBERON:0005256!1.49e-09!143;UBERON:0000914!9.44e-09!83;UBERON:0002329!9.44e-09!83;UBERON:0003077!9.44e-09!83;UBERON:0003059!9.44e-09!83;UBERON:0007282!9.44e-09!83;UBERON:0009618!9.44e-09!83;UBERON:0007285!9.44e-09!83;UBERON:0004290!1.77e-08!70;UBERON:0003914!1.83e-08!118;UBERON:0001637!3.78e-08!42;UBERON:0003509!3.78e-08!42;UBERON:0004572!3.78e-08!42;UBERON:0003104!8.66e-08!238;UBERON:0009142!8.66e-08!238;UBERON:0001134!4.00e-07!61;UBERON:0002036!4.00e-07!61;UBERON:0003082!4.00e-07!61;UBERON:0002204!5.82e-07!167;UBERON:0004573!7.18e-07!33;UBERON:0004571!7.18e-07!33;UBERON:0002385!7.30e-07!63;UBERON:0001015!7.30e-07!63;UBERON:0000383!7.30e-07!63 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,2.37e-11,199;UBERON:0000486,3.06e-10,83;UBERON:0007503,4.92e-09,78;UBERON:0003914,1.18e-08,117;UBERON:0002329,2.92e-08,71;UBERON:0003059,2.92e-08,71;UBERON:0007282,2.92e-08,71;UBERON:0004290,2.92e-08,71;UBERON:0009618,2.92e-08,71;UBERON:0000926,2.95e-08,315;UBERON:0004120,2.95e-08,315;UBERON:0006603,2.95e-08,315;UBERON:0001637,3.77e-08,42;UBERON:0003509,3.77e-08,42;UBERON:0004572,3.77e-08,42;UBERON:0007524,5.38e-08,73;UBERON:0003104,6.39e-08,160;UBERON:0009142,6.39e-08,160;UBERON:0003077,8.94e-08,72;UBERON:0007285,8.94e-08,72;UBERON:0005256,3.89e-07,122;UBERON:0000490,4.39e-07,148;UBERON:0002204,5.03e-07,167;UBERON:0001134,6.43e-07,62;UBERON:0002036,6.43e-07,62;UBERON:0003082,6.43e-07,62;UBERON:0004573,7.17e-07,33;UBERON:0004571,7.17e-07,33 | |||
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| ||
|short_description=p1@AGPAT2 | |short_description=p1@AGPAT2 | ||
}} | }} |
Latest revision as of 12:54, 16 September 2015
Short description: | p1@AGPAT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AGPAT2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_001012727, NM_006412, uc004cii.1, uc004cij.1_5end |
EntrezGene: | AGPAT2 |
HGNC: | 325 |
UniProt: | O15120 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 3.20e-10 | 43 |
smooth muscle myoblast | 3.20e-10 | 43 |
vascular associated smooth muscle cell | 2.82e-09 | 32 |
mesodermal cell | 5.80e-09 | 121 |
embryonic cell | 1.02e-08 | 250 |
muscle precursor cell | 2.78e-08 | 58 |
myoblast | 2.78e-08 | 58 |
multi-potent skeletal muscle stem cell | 2.78e-08 | 58 |
muscle cell | 1.16e-07 | 55 |
epithelial cell | 1.28e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
trunk | 2.37e-11 | 199 |
multilaminar epithelium | 3.06e-10 | 83 |
epithelial vesicle | 4.92e-09 | 78 |
epithelial tube | 1.18e-08 | 117 |
somite | 2.92e-08 | 71 |
presomitic mesoderm | 2.92e-08 | 71 |
presumptive segmental plate | 2.92e-08 | 71 |
dermomyotome | 2.92e-08 | 71 |
trunk paraxial mesoderm | 2.92e-08 | 71 |
mesoderm | 2.95e-08 | 315 |
mesoderm-derived structure | 2.95e-08 | 315 |
presumptive mesoderm | 2.95e-08 | 315 |
artery | 3.77e-08 | 42 |
arterial blood vessel | 3.77e-08 | 42 |
arterial system | 3.77e-08 | 42 |
dense mesenchyme tissue | 5.38e-08 | 73 |
mesenchyme | 6.39e-08 | 160 |
entire embryonic mesenchyme | 6.39e-08 | 160 |
paraxial mesoderm | 8.94e-08 | 72 |
presumptive paraxial mesoderm | 8.94e-08 | 72 |
trunk mesenchyme | 3.89e-07 | 122 |
unilaminar epithelium | 4.39e-07 | 148 |
musculoskeletal system | 5.03e-07 | 167 |
skeletal muscle tissue | 6.43e-07 | 62 |
striated muscle tissue | 6.43e-07 | 62 |
myotome | 6.43e-07 | 62 |
systemic artery | 7.17e-07 | 33 |
systemic arterial system | 7.17e-07 | 33 |