FFCP PHASE1:Hg19::chr16:25123095..25123128,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:25123095..25123128,+
|short_description=p2@LCMT1
|description=CAGE_peak_2_at_LCMT1_5end
|association_with_transcript=48bp_to_ENST00000380966,ENST000003990...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51451 | |EntrezGene=51451 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17557 | |HGNC=17557 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UIC8 | |UniProt=Q9UIC8 | ||
|association_with_transcript=48bp_to_ENST00000380966,ENST00000399069,NM_001032391,NM_016309,uc002dnw.1,uc002dnx.1,uc002dny.1,uc002dnz.1,uc002doa.1_5end | |||
|cluster_id=chr16:25123095..25123128,+ | |||
|description=CAGE_peak_2_at_LCMT1_5end | |||
|id=chr16:25123095..25123128,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.82e-25!254;CL:0002076!2.26e-09!43;CL:0002321!1.33e-07!248;CL:0000084!2.46e-07!25;CL:0000827!2.46e-07!25;CL:0000223!2.94e-07!59;CL:0000220!4.22e-07!246;CL:0000791!7.11e-07!18;CL:0000789!7.11e-07!18;CL:0002420!7.11e-07!18;CL:0002419!7.11e-07!18;CL:0000790!7.11e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000084;2.24e-07;25!CL:1000507;4.11e-07;10!CL:1000494;4.11e-07;10!CL:0002159;5.03e-07;14!CL:0000791;6.55e-07;18!CL:0000789;6.55e-07;18!CL:0002419;6.55e-07;18!CL:0002076;7.93e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.63e-25,253;CL:0002076,5.15e-09,42;CL:0002321,2.18e-07,250;CL:0000084,2.46e-07,25;CL:0000827,2.46e-07,25;CL:1000507,3.99e-07,10;CL:1000494,3.99e-07,10;CL:0000223,5.90e-07,58;CL:0000791,7.11e-07,18;CL:0000789,7.11e-07,18;CL:0002420,7.11e-07,18;CL:0002419,7.11e-07,18;CL:0000790,7.11e-07,18;CL:0002159,7.28e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000790;6.55e-07;18 | |||
|ontology_enrichment_disease=DOID:305!1.79e-10!106;DOID:0050687!3.30e-08!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.79e-10,106;DOID:0050687,3.30e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0002113!2.57e-07!27;UBERON:0003918!2.57e-07!27;UBERON:0005095!2.57e-07!27;UBERON:0007687!2.57e-07!27;UBERON:0006554!7.34e-07!44;UBERON:0004119!8.56e-07!169;UBERON:0000925!8.56e-07!169;UBERON:0006595!8.56e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.69e-08;30!UBERON:0001008;1.69e-08;30!UBERON:0002113;1.48e-07;24!UBERON:0011143;1.48e-07;24!UBERON:0004211;4.11e-07;10!UBERON:0009773;4.11e-07;10!UBERON:0001231;4.11e-07;10!UBERON:0004810;4.11e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006554,6.07e-09,47;UBERON:0001008,1.04e-08,48;UBERON:0002113,8.14e-08,26;UBERON:0003918,8.14e-08,26;UBERON:0011143,8.14e-08,26;UBERON:0005095,8.14e-08,26;UBERON:0007687,8.14e-08,26;UBERON:0004810,3.99e-07,10;UBERON:0004119,7.13e-07,160;UBERON:0000925,7.13e-07,160;UBERON:0006595,7.13e-07,160 | |||
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6459487 | ||
|short_description=p2@LCMT1 | |||
}} | }} |
Latest revision as of 19:31, 15 September 2015
Short description: | p2@LCMT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LCMT1_5end |
Coexpression cluster: | NA |
Association with transcript: | 48bp_to_ENST00000380966, ENST00000399069, NM_001032391, NM_016309, uc002dnw.1, uc002dnx.1, uc002dny.1, uc002dnz.1, uc002doa.1_5end |
EntrezGene: | LCMT1 |
HGNC: | 17557 |
UniProt: | Q9UIC8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.63e-25 | 253 |
endo-epithelial cell | 5.15e-09 | 42 |
embryonic cell | 2.18e-07 | 250 |
T cell | 2.46e-07 | 25 |
pro-T cell | 2.46e-07 | 25 |
kidney tubule cell | 3.99e-07 | 10 |
nephron tubule epithelial cell | 3.99e-07 | 10 |
endodermal cell | 5.90e-07 | 58 |
mature alpha-beta T cell | 7.11e-07 | 18 |
alpha-beta T cell | 7.11e-07 | 18 |
immature T cell | 7.11e-07 | 18 |
mature T cell | 7.11e-07 | 18 |
immature alpha-beta T cell | 7.11e-07 | 18 |
general ecto-epithelial cell | 7.28e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
urinary system structure | 6.07e-09 | 47 |
renal system | 1.04e-08 | 48 |
kidney | 8.14e-08 | 26 |
kidney mesenchyme | 8.14e-08 | 26 |
upper urinary tract | 8.14e-08 | 26 |
kidney rudiment | 8.14e-08 | 26 |
kidney field | 8.14e-08 | 26 |
nephron tubule epithelium | 3.99e-07 | 10 |
endoderm-derived structure | 7.13e-07 | 160 |
endoderm | 7.13e-07 | 160 |
presumptive endoderm | 7.13e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.79e-10 | 106 |
cell type cancer | 3.30e-08 | 143 |