FFCP PHASE1:Hg19::chr7:142494038..142494075,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=12168 | |HGNC=12168 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000390412,uc003wbe.3,uc003wbf.3_5end | |association_with_transcript=0bp_to_ENST00000390412,uc003wbe.3,uc003wbf.3_5end | ||
|cluster_id=chr7:142494038..142494075,+ | |||
|description=CAGE_peak_1_at_TRBJ2-1_5end | |description=CAGE_peak_1_at_TRBJ2-1_5end | ||
|id=chr7:142494038..142494075,+ | |id=chr7:142494038..142494075,+ | ||
|ontology_enrichment_celltype=CL:0000542!5.73e-16!53;CL:0000051!5.73e-16!53;CL:0000838!1.46e-15!52;CL:0000084!3.00e-14!25;CL:0000827!3.00e-14!25;CL:0000791!2.44e-13!18;CL:0000789!2.44e-13!18;CL:0002420!2.44e-13!18;CL:0002419!2.44e-13!18;CL:0000790!2.44e-13!18;CL:0000071!2.58e-09!18;CL:0002546!2.58e-09!18;CL:1000449!6.94e-09!16;CL:0000625!1.06e-08!11;CL:0000115!2.42e-08!35;CL:1000413!1.37e-07!9;CL:0002078!1.84e-07!44;CL:0002681!2.97e-07!13;CL:0002584!2.97e-07!13;CL:1000497!3.00e-07!18;CL:0002518!3.00e-07!18;CL:1000507!7.53e-07!12;CL:1000494!7.53e-07!12;CL:0002087!8.69e-07!119 | |ontology_enrichment_celltype=CL:0000542!5.73e-16!53;CL:0000051!5.73e-16!53;CL:0000838!1.46e-15!52;CL:0000084!3.00e-14!25;CL:0000827!3.00e-14!25;CL:0000791!2.44e-13!18;CL:0000789!2.44e-13!18;CL:0002420!2.44e-13!18;CL:0002419!2.44e-13!18;CL:0000790!2.44e-13!18;CL:0000071!2.58e-09!18;CL:0002546!2.58e-09!18;CL:1000449!6.94e-09!16;CL:0000625!1.06e-08!11;CL:0000115!2.42e-08!35;CL:1000413!1.37e-07!9;CL:0002078!1.84e-07!44;CL:0002681!2.97e-07!13;CL:0002584!2.97e-07!13;CL:1000497!3.00e-07!18;CL:0002518!3.00e-07!18;CL:1000507!7.53e-07!12;CL:1000494!7.53e-07!12;CL:0002087!8.69e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000084;1.30e-18;25!CL:0000791;6.97e-18;18!CL:0000789;6.97e-18;18!CL:0002419;6.97e-18;18!CL:0000071;3.81e-13;18!CL:1000449;8.81e-12;15!CL:0000542;1.51e-11;53!CL:0000625;1.89e-11;11!CL:0000115;2.94e-10;36!CL:1000413;5.92e-10;9!CL:1000497;7.00e-10;17!CL:0002518;7.00e-10;17!CL:0002681;1.55e-09;12!CL:0002584;1.55e-09;12!CL:0002543;1.30e-08;6!CL:0002139;1.43e-08;24!CL:1000507;3.47e-08;10!CL:1000494;3.47e-08;10!CL:0000624;1.84e-07;6!CL:0002544;4.33e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,5.43e-20,53;CL:0000051,5.43e-20,53;CL:0000838,1.95e-19,52;CL:0000084,1.19e-18,25;CL:0000827,1.19e-18,25;CL:0000791,6.38e-18,18;CL:0000789,6.38e-18,18;CL:0002420,6.38e-18,18;CL:0002419,6.38e-18,18;CL:0000790,6.38e-18,18;CL:0000071,3.95e-13,18;CL:0002546,3.95e-13,18;CL:1000449,1.18e-11,15;CL:0000625,1.76e-11,11;CL:0000115,2.68e-11,36;CL:0002078,2.73e-10,45;CL:1000413,6.15e-10,9;CL:1000497,8.95e-10,17;CL:0002518,8.95e-10,17;CL:0002681,2.18e-09,12;CL:0002584,2.18e-09,12;CL:0002543,1.32e-08,6;CL:0002139,1.47e-08,24;CL:1000507,3.66e-08,10;CL:1000494,3.66e-08,10;CL:0000624,1.87e-07,6;CL:0002544,4.37e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000790;6.97e-18;18!CL:0002546;3.81e-13;18!CL:0000051;1.51e-11;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!2.58e-09!18;UBERON:0004638!2.58e-09!18;UBERON:0004852!2.58e-09!18;UBERON:0006555!6.35e-09!17;UBERON:0005103!6.35e-09!17;UBERON:0000083!6.35e-09!17;UBERON:0009201!6.35e-09!17;UBERON:0004819!6.35e-09!17;UBERON:0006553!6.35e-09!17;UBERON:0003074!6.35e-09!17;UBERON:0003060!6.35e-09!17;UBERON:0004211!6.94e-09!16;UBERON:0001285!6.94e-09!16;UBERON:0007684!6.94e-09!16;UBERON:0003220!6.94e-09!16;UBERON:0004208!6.94e-09!16;UBERON:0001638!1.69e-08!9;UBERON:0003920!1.69e-08!9;UBERON:0004582!1.69e-08!9;UBERON:0000080!4.39e-08!18;UBERON:0002120!4.39e-08!18;UBERON:0004875!4.39e-08!18;UBERON:0005721!4.39e-08!18;UBERON:0005754!4.39e-08!18;UBERON:0007297!4.39e-08!18;UBERON:0003887!5.18e-08!21;UBERON:0000487!9.23e-08!22;UBERON:0003915!1.37e-07!9;UBERON:0004700!1.37e-07!9;UBERON:0001917!1.37e-07!9;UBERON:0004876!1.71e-07!20;UBERON:0001225!2.97e-07!13;UBERON:0008987!2.97e-07!13;UBERON:0009773!7.53e-07!12;UBERON:0001231!7.53e-07!12;UBERON:0004810!7.53e-07!12;UBERON:0003081!8.83e-07!216 | |ontology_enrichment_uberon=UBERON:0001986!2.58e-09!18;UBERON:0004638!2.58e-09!18;UBERON:0004852!2.58e-09!18;UBERON:0006555!6.35e-09!17;UBERON:0005103!6.35e-09!17;UBERON:0000083!6.35e-09!17;UBERON:0009201!6.35e-09!17;UBERON:0004819!6.35e-09!17;UBERON:0006553!6.35e-09!17;UBERON:0003074!6.35e-09!17;UBERON:0003060!6.35e-09!17;UBERON:0004211!6.94e-09!16;UBERON:0001285!6.94e-09!16;UBERON:0007684!6.94e-09!16;UBERON:0003220!6.94e-09!16;UBERON:0004208!6.94e-09!16;UBERON:0001638!1.69e-08!9;UBERON:0003920!1.69e-08!9;UBERON:0004582!1.69e-08!9;UBERON:0000080!4.39e-08!18;UBERON:0002120!4.39e-08!18;UBERON:0004875!4.39e-08!18;UBERON:0005721!4.39e-08!18;UBERON:0005754!4.39e-08!18;UBERON:0007297!4.39e-08!18;UBERON:0003887!5.18e-08!21;UBERON:0000487!9.23e-08!22;UBERON:0003915!1.37e-07!9;UBERON:0004700!1.37e-07!9;UBERON:0001917!1.37e-07!9;UBERON:0004876!1.71e-07!20;UBERON:0001225!2.97e-07!13;UBERON:0008987!2.97e-07!13;UBERON:0009773!7.53e-07!12;UBERON:0001231!7.53e-07!12;UBERON:0004810!7.53e-07!12;UBERON:0003081!8.83e-07!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0004638;3.81e-13;18!UBERON:0001986;3.81e-13;18!UBERON:0004852;3.81e-13;18!UBERON:0006555;8.81e-12;15!UBERON:0004819;8.81e-12;15!UBERON:0001285;8.81e-12;15!UBERON:0007684;8.81e-12;15!UBERON:0000487;1.64e-11;22!UBERON:0001638;3.57e-11;9!UBERON:0003920;3.57e-11;9!UBERON:0004582;3.57e-11;9!UBERON:0003915;5.92e-10;9!UBERON:0004700;5.92e-10;9!UBERON:0001917;5.92e-10;9!UBERON:0001225;1.55e-09;12!UBERON:0008987;1.55e-09;12!UBERON:0006914;1.81e-09;25!UBERON:0000353;3.11e-08;15!UBERON:0004211;3.47e-08;10!UBERON:0009773;3.47e-08;10!UBERON:0001231;3.47e-08;10!UBERON:0004810;3.47e-08;10!UBERON:0006554;4.01e-08;30!UBERON:0001008;4.01e-08;30!UBERON:0003914;2.73e-07;74!UBERON:0000490;4.14e-07;33!UBERON:0001851;5.24e-07;15 | |||
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| ||
|short_description=p1@TRBJ2-1 | |short_description=p1@TRBJ2-1 | ||
}} | }} |
Latest revision as of 21:27, 16 September 2015
Short description: | p1@TRBJ2-1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRBJ2-1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000390412, uc003wbe.3, uc003wbf.3_5end |
EntrezGene: | NA |
HGNC: | 12168 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 5.43e-20 | 53 |
common lymphoid progenitor | 5.43e-20 | 53 |
lymphoid lineage restricted progenitor cell | 1.95e-19 | 52 |
T cell | 1.19e-18 | 25 |
pro-T cell | 1.19e-18 | 25 |
mature alpha-beta T cell | 6.38e-18 | 18 |
alpha-beta T cell | 6.38e-18 | 18 |
immature T cell | 6.38e-18 | 18 |
mature T cell | 6.38e-18 | 18 |
immature alpha-beta T cell | 6.38e-18 | 18 |
blood vessel endothelial cell | 3.95e-13 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.95e-13 | 18 |
epithelial cell of nephron | 1.18e-11 | 15 |
CD8-positive, alpha-beta T cell | 1.76e-11 | 11 |
endothelial cell | 2.68e-11 | 36 |
meso-epithelial cell | 2.73e-10 | 45 |
endothelial cell of artery | 6.15e-10 | 9 |
kidney cell | 8.95e-10 | 17 |
kidney epithelial cell | 8.95e-10 | 17 |
kidney cortical cell | 2.18e-09 | 12 |
renal cortical epithelial cell | 2.18e-09 | 12 |
vein endothelial cell | 1.32e-08 | 6 |
endothelial cell of vascular tree | 1.47e-08 | 24 |
kidney tubule cell | 3.66e-08 | 10 |
nephron tubule epithelial cell | 3.66e-08 | 10 |
CD4-positive, alpha-beta T cell | 1.87e-07 | 6 |
aortic endothelial cell | 4.37e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 3.95e-13 | 18 |
endothelium | 3.95e-13 | 18 |
cardiovascular system endothelium | 3.95e-13 | 18 |
nephron epithelium | 1.18e-11 | 15 |
renal tubule | 1.18e-11 | 15 |
nephron tubule | 1.18e-11 | 15 |
nephron | 1.18e-11 | 15 |
uriniferous tubule | 1.18e-11 | 15 |
nephrogenic mesenchyme | 1.18e-11 | 15 |
simple squamous epithelium | 1.69e-11 | 22 |
vein | 3.38e-11 | 9 |
venous blood vessel | 3.38e-11 | 9 |
venous system | 3.38e-11 | 9 |
excretory tube | 1.18e-10 | 16 |
kidney epithelium | 1.18e-10 | 16 |
endothelial tube | 6.15e-10 | 9 |
arterial system endothelium | 6.15e-10 | 9 |
endothelium of artery | 6.15e-10 | 9 |
squamous epithelium | 1.86e-09 | 25 |
cortex of kidney | 2.18e-09 | 12 |
renal parenchyma | 2.18e-09 | 12 |
urinary system structure | 3.60e-08 | 47 |
nephron tubule epithelium | 3.66e-08 | 10 |
parenchyma | 3.92e-08 | 15 |
renal system | 7.54e-08 | 48 |
cardiovascular system | 9.41e-08 | 109 |
circulatory system | 3.11e-07 | 112 |
vasculature | 6.62e-07 | 78 |
vascular system | 6.62e-07 | 78 |
cortex | 6.78e-07 | 15 |