FFCP PHASE1:Hg19::chr9:135297009..135297015,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=42534 | |HGNC=42534 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-12bp_to_ENST00000516712_5end | |association_with_transcript=-12bp_to_ENST00000516712_5end | ||
|cluster_id=chr9:135297009..135297015,+ | |||
|coexpression_cluster_id=C408 | |||
|description=CAGE_peak_1_at_RNU5D-2P_5end | |description=CAGE_peak_1_at_RNU5D-2P_5end | ||
|id=chr9:135297009..135297015,+ | |id=chr9:135297009..135297015,+ | ||
|ontology_enrichment_celltype=CL:0000860!2.45e-09!45;CL:0002057!1.02e-08!42;CL:0000763!1.97e-08!112;CL:0000049!1.97e-08!112;CL:0000766!4.30e-08!76;CL:0000839!7.42e-08!70;CL:0000557!1.07e-07!71;CL:0000893!1.37e-07!2;CL:0002489!1.37e-07!2;CL:0000809!1.37e-07!2;CL:0000808!1.37e-07!2;CL:0000894!1.37e-07!2;CL:0000806!1.37e-07!2;CL:0000807!1.37e-07!2;CL:0000805!1.37e-07!2;CL:0002425!1.37e-07!2;CL:0002194!9.20e-07!63;CL:0000576!9.20e-07!63;CL:0000040!9.20e-07!63;CL:0000559!9.20e-07!63 | |ontology_enrichment_celltype=CL:0000860!2.45e-09!45;CL:0002057!1.02e-08!42;CL:0000763!1.97e-08!112;CL:0000049!1.97e-08!112;CL:0000766!4.30e-08!76;CL:0000839!7.42e-08!70;CL:0000557!1.07e-07!71;CL:0000893!1.37e-07!2;CL:0002489!1.37e-07!2;CL:0000809!1.37e-07!2;CL:0000808!1.37e-07!2;CL:0000894!1.37e-07!2;CL:0000806!1.37e-07!2;CL:0000807!1.37e-07!2;CL:0000805!1.37e-07!2;CL:0002425!1.37e-07!2;CL:0002194!9.20e-07!63;CL:0000576!9.20e-07!63;CL:0000040!9.20e-07!63;CL:0000559!9.20e-07!63 | ||
|ontology_enrichment_celltype_v019=CL:0000767;6.76e-18;3!CL:0002188;3.42e-11;5!CL:1000746;2.26e-08;7!CL:1000612;2.26e-08;7!CL:0000094;1.49e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000767,6.76e-18,3;CL:0002188,3.60e-11,5;CL:1000746,2.35e-08,7;CL:1000612,2.35e-08,7;CL:0000094,1.49e-07,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3910!1.56e-07!2 | |ontology_enrichment_disease=DOID:3910!1.56e-07!2 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004903!1.56e-07!2;UBERON:0002173!1.56e-07!2;UBERON:0002186!1.56e-07!2 | |ontology_enrichment_uberon=UBERON:0004903!1.56e-07!2;UBERON:0002173!1.56e-07!2;UBERON:0002186!1.56e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0000074;2.26e-08;7!UBERON:0001229;2.26e-08;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010532,2.35e-08,7;UBERON:0000074,2.35e-08,7;UBERON:0001229,2.35e-08,7;UBERON:0001230,2.35e-08,7;UBERON:0003220,2.35e-08,7;UBERON:0005749,2.35e-08,7;UBERON:0004199,2.35e-08,7;UBERON:0004209,2.35e-08,7;UBERON:0004198,2.35e-08,7;UBERON:0005103,1.80e-07,8;UBERON:0000083,1.80e-07,8;UBERON:0009201,1.80e-07,8;UBERON:0006553,1.80e-07,8;UBERON:0003074,1.80e-07,8;UBERON:0003060,1.80e-07,8;UBERON:0000080,8.85e-07,9;UBERON:0002120,8.85e-07,9;UBERON:0004875,8.85e-07,9;UBERON:0005721,8.85e-07,9;UBERON:0005754,8.85e-07,9;UBERON:0007297,8.85e-07,9 | |||
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| ||
|short_description=p1@RNU5D-2P | |short_description=p1@RNU5D-2P | ||
}} | }} |
Latest revision as of 04:13, 16 September 2015
Short description: | p1@RNU5D-2P |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RNU5D-2P_5end |
Coexpression cluster: | C408_Basophils_CD14_amniotic_nasal_Natural_mature_CD34 |
Association with transcript: | -12bp_to_ENST00000516712_5end |
EntrezGene: | NA |
HGNC: | 42534 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
basophil | 6.76e-18 | 3 |
glomerular endothelial cell | 3.60e-11 | 5 |
glomerular cell | 2.35e-08 | 7 |
kidney corpuscule cell | 2.35e-08 | 7 |
granulocyte | 1.49e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
primitive nephron | 2.35e-08 | 7 |
renal glomerulus | 2.35e-08 | 7 |
renal corpuscle | 2.35e-08 | 7 |
glomerular capsule | 2.35e-08 | 7 |
metanephric mesenchyme | 2.35e-08 | 7 |
glomerular tuft | 2.35e-08 | 7 |
S-shaped body | 2.35e-08 | 7 |
renal vesicle | 2.35e-08 | 7 |
comma-shaped body | 2.35e-08 | 7 |
mesonephric epithelium | 1.80e-07 | 8 |
mesonephric tubule | 1.80e-07 | 8 |
nephric duct | 1.80e-07 | 8 |
renal duct | 1.80e-07 | 8 |
mesonephric duct | 1.80e-07 | 8 |
pronephric duct | 1.80e-07 | 8 |
mesonephros | 8.85e-07 | 9 |
pronephros | 8.85e-07 | 9 |
nephrogenic cord | 8.85e-07 | 9 |
pronephric mesoderm | 8.85e-07 | 9 |
rostral part of nephrogenic cord | 8.85e-07 | 9 |
presumptive pronephric mesoderm | 8.85e-07 | 9 |