FFCP PHASE1:Hg19::chr15:72499568..72499603,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5315 | |EntrezGene=5315 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9021 | |HGNC=9021 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-332bp_to_uc002ats.1_5end | |association_with_transcript=-332bp_to_uc002ats.1_5end | ||
|cluster_id=chr15:72499568..72499603,- | |||
|coexpression_cluster_id=C1409 | |||
|description=CAGE_peak_6_at_PKM2_5end | |description=CAGE_peak_6_at_PKM2_5end | ||
|id=chr15:72499568..72499603,- | |id=chr15:72499568..72499603,- | ||
|ontology_enrichment_celltype=CL:0000548!2.66e-18!679;CL:0000004!2.66e-18!679;CL:0000255!2.66e-18!679;CL:0000012!8.79e-18!682;CL:0000144!4.72e-15!625;CL:0002321!1.62e-13!248;CL:0000220!1.70e-13!246;CL:0000055!1.70e-13!180;CL:0002371!2.64e-13!591;CL:0000003!1.70e-11!722;CL:0000192!1.79e-11!42;CL:0000514!1.79e-11!42;CL:0000222!1.20e-10!119;CL:0000183!1.36e-10!59;CL:0000680!1.55e-10!57;CL:0000056!1.55e-10!57;CL:0000355!1.55e-10!57;CL:0000187!9.86e-10!54;CL:0000359!9.93e-10!32;CL:0000066!1.08e-08!254;CL:0000393!1.21e-08!60;CL:0000211!1.21e-08!60;CL:0000063!5.04e-07!578 | |ontology_enrichment_celltype=CL:0000548!2.66e-18!679;CL:0000004!2.66e-18!679;CL:0000255!2.66e-18!679;CL:0000012!8.79e-18!682;CL:0000144!4.72e-15!625;CL:0002321!1.62e-13!248;CL:0000220!1.70e-13!246;CL:0000055!1.70e-13!180;CL:0002371!2.64e-13!591;CL:0000003!1.70e-11!722;CL:0000192!1.79e-11!42;CL:0000514!1.79e-11!42;CL:0000222!1.20e-10!119;CL:0000183!1.36e-10!59;CL:0000680!1.55e-10!57;CL:0000056!1.55e-10!57;CL:0000355!1.55e-10!57;CL:0000187!9.86e-10!54;CL:0000359!9.93e-10!32;CL:0000066!1.08e-08!254;CL:0000393!1.21e-08!60;CL:0000211!1.21e-08!60;CL:0000063!5.04e-07!578 | ||
|ontology_enrichment_celltype_v019=CL:0000359;7.66e-10;32!CL:0000192;2.80e-08;43!CL:1000449;7.04e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.01e-13,250;CL:0000192,5.29e-11,43;CL:0000514,5.29e-11,43;CL:0000222,2.40e-10,121;CL:0000680,3.44e-10,58;CL:0000056,3.44e-10,58;CL:0000355,3.44e-10,58;CL:0000359,1.17e-09,32;CL:0000187,2.54e-09,55;CL:0000393,3.99e-08,61;CL:0000211,3.99e-08,61;CL:0000066,5.07e-08,253;CL:1000449,2.48e-07,15;CL:1000497,4.29e-07,17;CL:0002518,4.29e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000514;2.80e-08;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!3.24e-13!82;UBERON:0005256!1.57e-12!143;UBERON:0000914!2.03e-12!83;UBERON:0002329!2.03e-12!83;UBERON:0003077!2.03e-12!83;UBERON:0003059!2.03e-12!83;UBERON:0007282!2.03e-12!83;UBERON:0009618!2.03e-12!83;UBERON:0007285!2.03e-12!83;UBERON:0004290!2.83e-12!70;UBERON:0001134!7.78e-10!61;UBERON:0002036!7.78e-10!61;UBERON:0003082!7.78e-10!61;UBERON:0001637!1.46e-09!42;UBERON:0003509!1.46e-09!42;UBERON:0004572!1.46e-09!42;UBERON:0002385!5.82e-09!63;UBERON:0001015!5.82e-09!63;UBERON:0000383!5.82e-09!63;UBERON:0002100!1.07e-07!216;UBERON:0004573!2.56e-07!33;UBERON:0004571!2.56e-07!33 | |ontology_enrichment_uberon=UBERON:0000486!3.24e-13!82;UBERON:0005256!1.57e-12!143;UBERON:0000914!2.03e-12!83;UBERON:0002329!2.03e-12!83;UBERON:0003077!2.03e-12!83;UBERON:0003059!2.03e-12!83;UBERON:0007282!2.03e-12!83;UBERON:0009618!2.03e-12!83;UBERON:0007285!2.03e-12!83;UBERON:0004290!2.83e-12!70;UBERON:0001134!7.78e-10!61;UBERON:0002036!7.78e-10!61;UBERON:0003082!7.78e-10!61;UBERON:0001637!1.46e-09!42;UBERON:0003509!1.46e-09!42;UBERON:0004572!1.46e-09!42;UBERON:0002385!5.82e-09!63;UBERON:0001015!5.82e-09!63;UBERON:0000383!5.82e-09!63;UBERON:0002100!1.07e-07!216;UBERON:0004573!2.56e-07!33;UBERON:0004571!2.56e-07!33 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;7.04e-07;15!UBERON:0004819;7.04e-07;15!UBERON:0001285;7.04e-07;15!UBERON:0007684;7.04e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,3.54e-15,78;UBERON:0000486,5.94e-13,83;UBERON:0002329,2.05e-12,71;UBERON:0003059,2.05e-12,71;UBERON:0007282,2.05e-12,71;UBERON:0004290,2.05e-12,71;UBERON:0009618,2.05e-12,71;UBERON:0007524,3.06e-12,73;UBERON:0003077,6.29e-12,72;UBERON:0007285,6.29e-12,72;UBERON:0001134,9.30e-10,62;UBERON:0002036,9.30e-10,62;UBERON:0003082,9.30e-10,62;UBERON:0005256,9.33e-10,122;UBERON:0002385,6.85e-09,64;UBERON:0001015,6.85e-09,64;UBERON:0000383,6.85e-09,64;UBERON:0001637,1.20e-08,42;UBERON:0003509,1.20e-08,42;UBERON:0004572,1.20e-08,42;UBERON:0003104,4.14e-08,160;UBERON:0009142,4.14e-08,160;UBERON:0004211,2.48e-07,15;UBERON:0009773,2.48e-07,15;UBERON:0001231,2.48e-07,15;UBERON:0001285,2.48e-07,15;UBERON:0007684,2.48e-07,15;UBERON:0004208,2.48e-07,15;UBERON:0002100,4.52e-07,199 | |||
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| ||
|short_description=p6@PKM2 | |short_description=p6@PKM2 | ||
}} | }} |
Latest revision as of 22:27, 18 September 2015
Short description: | p6@PKM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PKM2_5end |
Coexpression cluster: | C1409_Smooth_Bronchial_Hair_Fibroblast_Alveolar_Mammary_leiomyoma |
Association with transcript: | -332bp_to_uc002ats.1_5end |
EntrezGene: | PKM2 |
HGNC: | 9021 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.01e-13 | 250 |
smooth muscle cell | 5.29e-11 | 43 |
smooth muscle myoblast | 5.29e-11 | 43 |
mesodermal cell | 2.40e-10 | 121 |
muscle precursor cell | 3.44e-10 | 58 |
myoblast | 3.44e-10 | 58 |
multi-potent skeletal muscle stem cell | 3.44e-10 | 58 |
vascular associated smooth muscle cell | 1.17e-09 | 32 |
muscle cell | 2.54e-09 | 55 |
electrically responsive cell | 3.99e-08 | 61 |
electrically active cell | 3.99e-08 | 61 |
epithelial cell | 5.07e-08 | 253 |
epithelial cell of nephron | 2.48e-07 | 15 |
kidney cell | 4.29e-07 | 17 |
kidney epithelial cell | 4.29e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 3.54e-15 | 78 |
multilaminar epithelium | 5.94e-13 | 83 |
somite | 2.05e-12 | 71 |
presomitic mesoderm | 2.05e-12 | 71 |
presumptive segmental plate | 2.05e-12 | 71 |
dermomyotome | 2.05e-12 | 71 |
trunk paraxial mesoderm | 2.05e-12 | 71 |
dense mesenchyme tissue | 3.06e-12 | 73 |
paraxial mesoderm | 6.29e-12 | 72 |
presumptive paraxial mesoderm | 6.29e-12 | 72 |
skeletal muscle tissue | 9.30e-10 | 62 |
striated muscle tissue | 9.30e-10 | 62 |
myotome | 9.30e-10 | 62 |
trunk mesenchyme | 9.33e-10 | 122 |
muscle tissue | 6.85e-09 | 64 |
musculature | 6.85e-09 | 64 |
musculature of body | 6.85e-09 | 64 |
artery | 1.20e-08 | 42 |
arterial blood vessel | 1.20e-08 | 42 |
arterial system | 1.20e-08 | 42 |
mesenchyme | 4.14e-08 | 160 |
entire embryonic mesenchyme | 4.14e-08 | 160 |
nephron epithelium | 2.48e-07 | 15 |
renal tubule | 2.48e-07 | 15 |
nephron tubule | 2.48e-07 | 15 |
nephron | 2.48e-07 | 15 |
uriniferous tubule | 2.48e-07 | 15 |
nephrogenic mesenchyme | 2.48e-07 | 15 |
trunk | 4.52e-07 | 199 |