FFCP PHASE1:Hg19::chrY:15863548..15863573,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=6214 | |HGNC=6214 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=12bp_to_ENST00000472227_5end | |association_with_transcript=12bp_to_ENST00000472227_5end | ||
|cluster_id=chrY:15863548..15863573,+ | |||
|coexpression_cluster_id=C425 | |||
|description=CAGE_peak_1_at_KALP_5end | |description=CAGE_peak_1_at_KALP_5end | ||
|id=chrY:15863548..15863573,+ | |id=chrY:15863548..15863573,+ | ||
|ontology_enrichment_celltype=CL:0002393!3.69e-14!9;CL:0002397!3.69e-14!9 | |ontology_enrichment_celltype=CL:0002393!3.69e-14!9;CL:0002397!3.69e-14!9 | ||
|ontology_enrichment_celltype_v019=CL:0002393;4.18e-24;6!CL:0002397;4.18e-24;6!CL:0000576;1.34e-11;48!CL:0000766;9.88e-11;69!CL:0000235;9.89e-10;6!CL:0002619;4.78e-09;3!CL:0000875;1.01e-08;3!CL:0000767;1.01e-08;3!CL:0002396;1.01e-08;3!CL:0000094;4.31e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0002393,4.62e-30,9;CL:0002397,4.62e-30,9;CL:0000766,3.79e-22,72;CL:0002194,6.61e-19,59;CL:0000576,6.61e-19,59;CL:0000040,6.61e-19,59;CL:0000559,6.61e-19,59;CL:0002009,3.39e-18,61;CL:0000473,6.26e-18,48;CL:0000234,6.26e-18,48;CL:0000839,1.31e-16,66;CL:0000557,2.56e-16,67;CL:0000763,1.37e-13,108;CL:0000049,1.37e-13,108;CL:0000738,6.78e-13,136;CL:0000860,6.47e-12,42;CL:0002057,6.47e-12,42;CL:0002087,4.45e-11,115;CL:0000235,7.16e-10,6;CL:0000037,1.13e-09,168;CL:0002619,3.21e-09,3;CL:0002031,4.38e-09,120;CL:0002032,4.86e-09,161;CL:0000837,4.86e-09,161;CL:0000988,5.62e-09,177;CL:0000875,1.56e-08,3;CL:0000767,1.56e-08,3;CL:0002396,1.56e-08,3;CL:0000094,5.07e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;9.12e-09;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1799;3.72e-07;1!DOID:10165;3.72e-07;1!DOID:1798;3.72e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,3.21e-07,1;DOID:10165,3.21e-07,1;DOID:1798,3.21e-07,1 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.72e-14,76;UBERON:0002390,1.37e-13,98;UBERON:0003061,1.37e-13,98;UBERON:0001474,8.15e-13,82;UBERON:0002193,5.07e-12,108;UBERON:0004765,2.02e-11,90;UBERON:0002405,5.83e-11,93;UBERON:0001434,5.42e-10,100 | |||
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| ||
|short_description=p1@KALP | |short_description=p1@KALP | ||
}} | }} |
Latest revision as of 16:54, 16 September 2015
Short description: | p1@KALP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_KALP_5end |
Coexpression cluster: | C425_iPS_HES3GFP_H9_teratocarcinoma_testicular_hepatocellular_Wilms |
Association with transcript: | 12bp_to_ENST00000472227_5end |
EntrezGene: | NA |
HGNC: | 6214 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intermediate monocyte | 4.62e-30 | 9 |
CD14-positive, CD16-positive monocyte | 4.62e-30 | 9 |
myeloid leukocyte | 3.79e-22 | 72 |
monopoietic cell | 6.61e-19 | 59 |
monocyte | 6.61e-19 | 59 |
monoblast | 6.61e-19 | 59 |
promonocyte | 6.61e-19 | 59 |
macrophage dendritic cell progenitor | 3.39e-18 | 61 |
defensive cell | 6.26e-18 | 48 |
phagocyte | 6.26e-18 | 48 |
myeloid lineage restricted progenitor cell | 1.31e-16 | 66 |
granulocyte monocyte progenitor cell | 2.56e-16 | 67 |
myeloid cell | 1.37e-13 | 108 |
common myeloid progenitor | 1.37e-13 | 108 |
leukocyte | 6.78e-13 | 136 |
classical monocyte | 6.47e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.47e-12 | 42 |
nongranular leukocyte | 4.45e-11 | 115 |
macrophage | 7.16e-10 | 6 |
hematopoietic stem cell | 1.13e-09 | 168 |
adult endothelial progenitor cell | 3.21e-09 | 3 |
hematopoietic lineage restricted progenitor cell | 4.38e-09 | 120 |
hematopoietic oligopotent progenitor cell | 4.86e-09 | 161 |
hematopoietic multipotent progenitor cell | 4.86e-09 | 161 |
hematopoietic cell | 5.62e-09 | 177 |
non-classical monocyte | 1.56e-08 | 3 |
basophil | 1.56e-08 | 3 |
CD14-low, CD16-positive monocyte | 1.56e-08 | 3 |
granulocyte | 5.07e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.72e-14 | 76 |
hematopoietic system | 1.37e-13 | 98 |
blood island | 1.37e-13 | 98 |
bone element | 8.15e-13 | 82 |
hemolymphoid system | 5.07e-12 | 108 |
skeletal element | 2.02e-11 | 90 |
immune system | 5.83e-11 | 93 |
skeletal system | 5.42e-10 | 100 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 3.21e-07 | 1 |
endocrine pancreas cancer | 3.21e-07 | 1 |
pancreatic endocrine carcinoma | 3.21e-07 | 1 |