FFCP PHASE1:Hg19::chr17:39775802..39775834,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:39775802..39775834,+
|short_description=p2@CU687211
|description=CAGE_peak_2_at_CU687211_5end
|association_with_transcript=-12bp_to_CU687211_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-12bp_to_CU687211_5end | |||
|cluster_id=chr17:39775802..39775834,+ | |||
|coexpression_cluster_id=C1170 | |||
|description=CAGE_peak_2_at_CU687211_5end | |||
|id=chr17:39775802..39775834,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.21e-30!254;CL:0002076!1.95e-26!43;CL:0002368!8.54e-20!13;CL:0000223!8.84e-19!59;CL:0002159!9.42e-14!13;CL:0002202!6.31e-12!9;CL:0002632!6.31e-12!9;CL:0002251!2.12e-10!21;CL:0000244!2.14e-10!4;CL:0000731!2.14e-10!4;CL:0002077!4.31e-09!33;CL:0000349!2.46e-08!3;CL:0002577!2.46e-08!3;CL:0002328!8.07e-08!3;CL:0000068!8.84e-08!3;CL:0000069!8.84e-08!3;CL:0000307!8.84e-08!3;CL:0000377!8.84e-08!3;CL:0002166!1.30e-07!3;CL:0000240!5.56e-07!6;CL:0000311!5.56e-07!6;CL:0000079!5.56e-07!6;CL:0000237!5.56e-07!6;CL:0000036!5.56e-07!6;CL:0000357!5.56e-07!6;CL:0000114!5.56e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002368;5.36e-24;13!CL:0002076;2.78e-20;42!CL:0002159;3.37e-18;14!CL:0000244;1.98e-17;4!CL:0000731;1.98e-17;4!CL:0002577;1.15e-13;3!CL:0002328;9.27e-13;3!CL:0000240;6.85e-12;6!CL:0000311;6.85e-12;6!CL:0000079;6.85e-12;6!CL:0000237;6.85e-12;6!CL:0002202;2.83e-11;9!CL:0002632;2.83e-11;9!CL:0002327;1.78e-10;4!CL:0000575;1.66e-09;2!CL:0002077;3.58e-09;34!CL:0000312;1.96e-08;5!CL:0000362;7.23e-08;9!CL:0000622;7.74e-08;5!CL:0002231;6.28e-07;3!CL:0002251;7.86e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.27e-26,253;CL:0002076,1.61e-24,42;CL:0002368,4.76e-24,13;CL:0002159,2.84e-18,14;CL:0000244,1.79e-17,4;CL:0000731,1.79e-17,4;CL:0000223,1.22e-16,58;CL:0002577,9.15e-14,3;CL:0002328,7.73e-13,3;CL:0000240,7.16e-12,6;CL:0000311,7.16e-12,6;CL:0000079,7.16e-12,6;CL:0000237,7.16e-12,6;CL:0000036,7.16e-12,6;CL:0000357,7.16e-12,6;CL:0000114,7.16e-12,6;CL:0002202,2.46e-11,9;CL:0002632,2.46e-11,9;CL:0002077,1.03e-10,34;CL:0002327,1.73e-10,4;CL:0000575,1.29e-09,2;CL:0000312,1.89e-08,5;CL:0000362,6.74e-08,9;CL:0000622,8.84e-08,5;CL:0002231,6.29e-07,3;CL:0002251,7.08e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000357;6.85e-12;6!CL:0000114;6.85e-12;6!CL:0000223;6.18e-10;58 | |||
|ontology_enrichment_disease=DOID:1749!2.67e-10!14;DOID:305!2.84e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!4.65e-26!72;UBERON:0000065!5.23e-25!53;UBERON:0004119!1.06e-22!169;UBERON:0000925!1.06e-22!169;UBERON:0006595!1.06e-22!169;UBERON:0000072!7.56e-21!46;UBERON:0001737!5.89e-19!9;UBERON:0001557!6.05e-19!19;UBERON:0008947!2.26e-16!38;UBERON:0003258!2.26e-16!38;UBERON:0000077!6.61e-15!130;UBERON:0001007!4.09e-13!155;UBERON:0001555!4.09e-13!155;UBERON:0007026!4.09e-13!155;UBERON:0001041!1.12e-12!98;UBERON:0000365!4.51e-12!5;UBERON:0004921!9.08e-12!129;UBERON:0004185!9.08e-12!129;UBERON:0000064!1.40e-11!219;UBERON:0007196!1.46e-11!14;UBERON:0001558!1.46e-11!14;UBERON:0005631!1.66e-11!14;UBERON:0000158!1.66e-11!14;UBERON:0005910!5.64e-10!6;UBERON:0000063!3.74e-09!97;UBERON:0003124!2.93e-08!7;UBERON:0003126!7.44e-08!7;UBERON:0001005!7.44e-08!7;UBERON:0004815!8.07e-08!3;UBERON:0002031!8.07e-08!3;UBERON:0000161!1.49e-07!35;UBERON:0000165!5.35e-07!28;UBERON:0000930!5.35e-07!28;UBERON:0003729!6.66e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.27e-20;9!UBERON:0001557;1.27e-20;9!UBERON:0000065;2.26e-16;44!UBERON:0000365;5.77e-14;5!UBERON:0004815;9.27e-13;3!UBERON:0002031;9.27e-13;3!UBERON:0000072;2.59e-12;37!UBERON:0000486;5.64e-12;12!UBERON:0005910;1.19e-11;6!UBERON:0001911;1.78e-10;4!UBERON:0001987;2.32e-10;4!UBERON:0001004;2.53e-10;65!UBERON:0002185;7.74e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.09e-20,9;UBERON:0004119,2.42e-17,160;UBERON:0000925,2.42e-17,160;UBERON:0006595,2.42e-17,160;UBERON:0001004,7.92e-17,74;UBERON:0000065,2.76e-15,54;UBERON:0000365,5.33e-14,5;UBERON:0004815,7.73e-13,3;UBERON:0002031,7.73e-13,3;UBERON:0008947,1.29e-12,38;UBERON:0003258,1.29e-12,38;UBERON:0005910,1.12e-11,6;UBERON:0001911,1.73e-10,4;UBERON:0005333,1.73e-10,4;UBERON:0008425,1.73e-10,4;UBERON:0005311,1.73e-10,4;UBERON:0001987,1.96e-10,4;UBERON:0004340,1.96e-10,4;UBERON:0000072,9.80e-10,47;UBERON:0001557,3.37e-09,19;UBERON:0002185,6.96e-08,5;UBERON:0006554,3.14e-07,47;UBERON:0003102,3.17e-07,99;UBERON:0005157,3.46e-07,47;UBERON:0001008,4.85e-07,48;UBERON:0001041,4.90e-07,87 | |||
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| ||
|short_description=p2@CU687211 | |||
}} | }} |
Latest revision as of 16:46, 25 July 2015
Short description: | p2@CU687211 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CU687211_5end |
Coexpression cluster: | C1170_Placental_Bronchial_nasal_Esophageal_Urothelial_Corneal_Keratinocyte |
Association with transcript: | -12bp_to_CU687211_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.27e-26 | 253 |
endo-epithelial cell | 1.61e-24 | 42 |
respiratory epithelial cell | 4.76e-24 | 13 |
general ecto-epithelial cell | 2.84e-18 | 14 |
transitional epithelial cell | 1.79e-17 | 4 |
urothelial cell | 1.79e-17 | 4 |
endodermal cell | 1.22e-16 | 58 |
placental epithelial cell | 9.15e-14 | 3 |
bronchial epithelial cell | 7.73e-13 | 3 |
stratified squamous epithelial cell | 7.16e-12 | 6 |
keratin accumulating cell | 7.16e-12 | 6 |
stratified epithelial cell | 7.16e-12 | 6 |
keratinizing barrier epithelial cell | 7.16e-12 | 6 |
epithelial fate stem cell | 7.16e-12 | 6 |
stratified epithelial stem cell | 7.16e-12 | 6 |
surface ectodermal cell | 7.16e-12 | 6 |
epithelial cell of tracheobronchial tree | 2.46e-11 | 9 |
epithelial cell of lower respiratory tract | 2.46e-11 | 9 |
ecto-epithelial cell | 1.03e-10 | 34 |
mammary gland epithelial cell | 1.73e-10 | 4 |
corneal epithelial cell | 1.29e-09 | 2 |
keratinocyte | 1.89e-08 | 5 |
epidermal cell | 6.74e-08 | 9 |
acinar cell | 8.84e-08 | 5 |
epithelial cell of prostate | 6.29e-07 | 3 |
epithelial cell of alimentary canal | 7.08e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.09e-20 | 9 |
endoderm-derived structure | 2.42e-17 | 160 |
endoderm | 2.42e-17 | 160 |
presumptive endoderm | 2.42e-17 | 160 |
respiratory system | 7.92e-17 | 74 |
respiratory tract | 2.76e-15 | 54 |
urothelium | 5.33e-14 | 5 |
lower respiratory tract epithelium | 7.73e-13 | 3 |
epithelium of bronchus | 7.73e-13 | 3 |
respiratory primordium | 1.29e-12 | 38 |
endoderm of foregut | 1.29e-12 | 38 |
transitional epithelium | 1.12e-11 | 6 |
mammary gland | 1.73e-10 | 4 |
mammary bud | 1.73e-10 | 4 |
mammary ridge | 1.73e-10 | 4 |
mammary placode | 1.73e-10 | 4 |
placenta | 1.96e-10 | 4 |
allantois | 1.96e-10 | 4 |
segment of respiratory tract | 9.80e-10 | 47 |
upper respiratory tract | 3.37e-09 | 19 |
bronchus | 6.96e-08 | 5 |
urinary system structure | 3.14e-07 | 47 |
surface structure | 3.17e-07 | 99 |
epithelial fold | 3.46e-07 | 47 |
renal system | 4.85e-07 | 48 |
foregut | 4.90e-07 | 87 |